MD13G1280000.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000331
Physical Location & Seq
Reverse (-)
39574263 .. 39574661
399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1280000.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGCTTGGCGCCAGATCTGCAAGGATTCTCTCATGTGGCGCACCATCGGCATGCACAACGACAGCAATTTGGATGATGTGATATTGAACTTGGATTTGATGCGCCGCTACGCAGTGGATCGTATCGCCGGCAATCTTGTCGATGTCAACGTTGAATACTTCAGCTCTGATCACCTCCTCAACTTTATCATCGATCGGTGCCGTGGTATTAAACGTCTCCGGTTTACATATTGCTACGATATAACAGATGTGGGGTTGAGTGAAATGGCTTCAAAACTTCCTCTGTTAGAGGAGCTTGAAATTTCTTTATGTGATAATCTGTCGTCTAAATTTGTGGAAGCGGTTGGATGCTTATGCCCCCGTTTGAAGTCATTGAAAACGCAAAAGGGTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

133

Amino Acids

15.26

Weight (kDa)

6.1

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 9, 198
AciI CCGC 2 cut(s) 106, 341
AclI AACGTT 1 cut(s) 150
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 2 cut(s) 300, 329
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 10
AgsI TTSAA 6 cut(s) 88, 155, 273, 299, 367, 376
AluBI AGCT 2 cut(s) 165, 295
AluI AGCT 2 cut(s) 165, 295
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 300, 329
AspLEI GCGC 3 cut(s) 12, 42, 105
AsuHPI GGTGA 1 cut(s) 164
BanI GGYRCC 2 cut(s) 9, 198
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 13
BglII AGATCT 1 cut(s) 15
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 11, 200
BmsI GCATC 2 cut(s) 90, 338
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 79, 353
BseRI GAGGAG 2 cut(s) 167, 305
Bsh1285I CGRYCG 1 cut(s) 196
BshNI GGYRCC 2 cut(s) 9, 198
BshVI ATCGAT 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 129, 220
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
Bsp143I GATC 4 cut(s) 15, 118, 169, 193
BspACI CCGC 2 cut(s) 106, 341
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 11, 200
BspPI GGATC 1 cut(s) 126
BspT107I GGYRCC 2 cut(s) 9, 198
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 4 cut(s) 15, 118, 169, 193
BssNI GRCGYC 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 53, 130
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 79, 353
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 3 cut(s) 12, 42, 105
BstKTI GATC 4 cut(s) 18, 121, 172, 196
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 15, 118, 169, 193
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 18, 48
BstNSI RCATGY 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
Bsu15I ATCGAT 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 79, 353
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 53, 130
CfoI GCGC 3 cut(s) 12, 42, 105
Cfr10I RCCGGY 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 192
CviAII CATG 2 cut(s) 34, 52
CviJI RGCY 4 cut(s) 5, 165, 269, 295
CviKI_1 RGCY 4 cut(s) 5, 165, 269, 295
DinI GGCGCC 1 cut(s) 11
DpnI GATC 4 cut(s) 17, 120, 171, 195
DpnII GATC 4 cut(s) 15, 118, 169, 193
Eco57I CTGAAG 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 2 cut(s) 37, 55
FaiI YATR 6 cut(s) 35, 53, 229, 242, 310, 355
FatI CATG 2 cut(s) 33, 51
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 2 cut(s) 86, 360
Fsp4HI GCNGC 1 cut(s) 106
GlaI GCGC 3 cut(s) 11, 41, 104
GluI GCNGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 13
HapII CCGG 2 cut(s) 129, 220
HhaI GCGC 3 cut(s) 12, 42, 105
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 2 cut(s) 37, 55
Hin6I GCGC 3 cut(s) 10, 40, 103
HinP1I GCGC 3 cut(s) 10, 40, 103
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 129, 220
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 148, 225
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 148, 225
HpyCH4IV ACGT 2 cut(s) 150, 214
HpyCH4V TGCA 2 cut(s) 21, 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 48
HpySE526I ACGT 2 cut(s) 150, 214
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 37, 55
HspAI GCGC 3 cut(s) 10, 40, 103
KasI GGCGCC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 15, 118, 169, 193
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 26, 142, 233
LweI GCATC 2 cut(s) 90, 338
MaeII ACGT 2 cut(s) 150, 214
MalI GATC 4 cut(s) 17, 120, 171, 195
MboI GATC 4 cut(s) 15, 118, 169, 193
MflI RGATCY 1 cut(s) 15
MluCI AATT 3 cut(s) 67, 300, 329
Mly113I GGCGCC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 4 cut(s) 185, 188, 283, 291
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 2 cut(s) 129, 220
MwoI GCNNNNNNNGC 2 cut(s) 18, 48
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 10
NdeII GATC 4 cut(s) 15, 118, 169, 193
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 37, 55
NlaIV GGNNCC 2 cut(s) 11, 200
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 107
Ple19I CGATCG 1 cut(s) 196
PluTI GGCGCC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 11, 200
PsuI RGATCY 1 cut(s) 15
PvuI CGATCG 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 4 cut(s) 15, 118, 169, 193
SetI ASST 5 cut(s) 153, 167, 177, 217, 297
SfaNI GCATC 2 cut(s) 90, 338
SfoI GGCGCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 50
SphI GCATGC 1 cut(s) 55
Sse9I AATT 3 cut(s) 67, 300, 329
SsiI CCGC 2 cut(s) 106, 341
SspDI GGCGCC 1 cut(s) 9
TaiI ACGT 2 cut(s) 153, 217
TaqI TCGA 2 cut(s) 141, 192
TasI AATT 3 cut(s) 67, 300, 329
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 120
TspRI CASTG 1 cut(s) 120
XapI RAATTY 2 cut(s) 300, 329
XceI RCATGY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.