Rh5BG117000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000331
Physical Location & Seq
Forward (+)
11022285 .. 11023280
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG117000.1

Sequence Viewer

Length: 285 bp
ATGTCGTCGATACTGGCACGTCTCGGAGCGATCAAGATCCTGCAGACTGCTCAGAAGGTTTGCACGACGTGGCGCAGAATCTGCAAGCAACCTTCGATGTGGCGCAGAATCGACATGAGTAATAAGTGGAGCTTCCCAAGCGATCAGCCTTTCGAGTTGGATAAGATGTGTCGTCACGCCATTGATCGCAGCTGTGGTAGTCTTGTTGAAATCAAACTCCAGAACTTCGGTAACAATGAACTCCTTAAGTACATCACTGATAGAATTTCTTTGAGGAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

94

Amino Acids

10.99

Weight (kDa)

9.69

Isoelectric Point (pI)

74.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 3 - 39 1.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 1 cut(s) 251
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 2 cut(s) 20, 69
AluBI AGCT 2 cut(s) 132, 192
AluI AGCT 2 cut(s) 132, 192
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 2 cut(s) 75, 105
BbvI GCAGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmgBI CACGTC 2 cut(s) 20, 69
BpmI CTGGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 30, 36, 142, 184
BspCNI CTCAG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 18
BssMI GATC 4 cut(s) 30, 36, 142, 184
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 75, 105
BstKTI GATC 4 cut(s) 33, 39, 145, 187
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 4 cut(s) 30, 36, 142, 184
BstMWI GCNNNNNNNGC 2 cut(s) 81, 138
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtrI CACGTC 2 cut(s) 20, 69
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 81
CfoI GCGC 2 cut(s) 75, 105
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 132, 148, 192
CviKI_1 RGCY 3 cut(s) 132, 148, 192
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 32, 38, 144, 186
DpnII GATC 4 cut(s) 30, 36, 142, 184
DraIII CACNNNGTG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 190
GlaI GCGC 2 cut(s) 74, 104
GluI GCNGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 203
HhaI GCGC 2 cut(s) 75, 105
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 2 cut(s) 73, 103
HinP1I GCGC 2 cut(s) 73, 103
HinfI GANTC 2 cut(s) 78, 108
Hpy188I TCNGA 2 cut(s) 26, 54
Hpy188III TCNNGA 2 cut(s) 34, 220
Hpy99I CGWCG 2 cut(s) 10, 70
HpyAV CCTTC 2 cut(s) 49, 102
HpyCH4IV ACGT 2 cut(s) 19, 68
HpyCH4V TGCA 3 cut(s) 43, 63, 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 138
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 19, 68
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 2 cut(s) 73, 103
Kzo9I GATC 4 cut(s) 30, 36, 142, 184
LmnI GCTCC 2 cut(s) 26, 129
LpnPI CCDG 2 cut(s) 53, 233
Lsp1109I GCAGC 1 cut(s) 201
MaeII ACGT 2 cut(s) 19, 68
MaeIII GTNAC 3 cut(s) 173, 230, 278
MalI GATC 4 cut(s) 32, 38, 144, 186
MboI GATC 4 cut(s) 30, 36, 142, 184
MflI RGATCY 1 cut(s) 36
MluCI AATT 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 267
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 81, 138
NdeII GATC 4 cut(s) 30, 36, 142, 184
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 173, 278
PfeI GAWTC 2 cut(s) 78, 108
PkrI GCNGC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 4 cut(s) 30, 36, 142, 184
SetI ASST 6 cut(s) 22, 60, 71, 94, 134, 194
SfcI CTRYAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 264
TaiI ACGT 2 cut(s) 22, 71
TaqI TCGA 4 cut(s) 8, 95, 111, 153
TasI AATT 1 cut(s) 264
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 2 cut(s) 78, 108
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 173, 278
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 2 cut(s) 173, 278
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 245
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.