Prupe.4G087700_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000331
Physical Location & Seq
Forward (+)
4303220 .. 4305248
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G087700.1

Sequence Viewer

Length: 1056 bp
ATGGGCAAGAAAAGAAACAAGAAGACCCTCGTCTGGAGGCCCAAACCCAAATCCAGAACCCCCCCAGCCGAAATGCGAAACTGGCTGGACCTTCCACGGGACGTCACCGTTTCGATACTCTCTCGACTCAGAGCGGTCGAGATTCTGGAGAGCGCGCAGATGGTATGCATGGCTTGGCGCATCATCTGCAAGGACCCTCTCATGTGGCGCACCATCGACATGACCAACGATGCCGATTACGACGACATGTTCTACAACTTGGATGCGATGTGCCGCCACGCAGTGGATCGTAGCTGTGGCGGTCTGGTCGATGTCAATATCGAGCACTTCGGCGACGACGATCTGCTTAAGTATATCACTGACAGTTGCGGTGGGATCAGACGTCTCCGGCTAGTGAGTTGCTATAGCATATCACGTGTGGGGTTGGGTAAGGTGGCGTCGAAGCTTACTCTGTTAGAGGAGCTTGAGATCTATGTATGCAATCTCTCACGTACATCTCTAGAAATGGTTGGGCGCTCTTGCCCTCTTTTGAAGTCATTCAAATTGAACAGGCCCGAATTTTCGGTTTATGGGATCAGTGGGTTTGGTGCCTATGATGGATTTGATGATTGGATTGATGATGAGAATGGTGATGAGAATGGTGGCTCAGTGATTGATTCTTTCGGGAAAGATGATGAAGCACTTGCTATAGCAGGAACGATGAATGGTTTACACCACCTTCAACTTTTCGGGAATCGGCTCACCAATGATGGCTTGAGGAAGATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCATTGTTTCAATCTTGATCTGAAGGGAGCTTTGGAAAAAAGATGTGCTGAACGAATTAAACAGTTGCGCCTTCCCAATGATTCCATTGATGACTATGAATTTTGTACTGCACCATGTGACTATGGATTTTATAATGATTCTGAGGACTTTGACTGTGATGATGATTATCCTTATGATTTTAATGGATACTACTCGGATGATAGTGATTTCTATGATGATTTTACCAAAATACGATTCTCTGATCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

352

Amino Acids

40.22

Weight (kDa)

4.74

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AatII GACGTC 2 cut(s) 105, 385
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 134
AccII CGCG 1 cut(s) 155
AciI CCGC 4 cut(s) 134, 274, 300, 369
AclWI GGATC 3 cut(s) 294, 383, 581
AcsI RAATTY 2 cut(s) 557, 902
AcuI CTGAAG 1 cut(s) 845
AcvI CACGTG 1 cut(s) 416
AcyI GRCGYC 3 cut(s) 102, 382, 437
AdeI CACNNNGTG 2 cut(s) 283, 920
AfaI GTAC 2 cut(s) 493, 910
AfiI CCNNNNNNNGG 3 cut(s) 33, 97, 283
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 2 cut(s) 246, 415
AgsI TTSAA 5 cut(s) 532, 541, 547, 722, 814
AjuI GAANNNNNNNTTGG 4 cut(s) 818, 850, 1022, 1054
AluBI AGCT 4 cut(s) 294, 445, 463, 833
AluI AGCT 4 cut(s) 294, 445, 463, 833
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 3 cut(s) 294, 383, 581
AoxI GGCC 2 cut(s) 38, 551
ApoI RAATTY 2 cut(s) 557, 902
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 7 cut(s) 155, 157, 180, 210, 516, 804, 873
AspS9I GGNCC 4 cut(s) 39, 88, 193, 552
AsuHPI GGTGA 3 cut(s) 97, 641, 733
AvaII GGWCC 2 cut(s) 88, 193
BanI GGYRCC 1 cut(s) 587
BbrPI CACGTG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 327
BccI CCATC 4 cut(s) 154, 221, 590, 743
BciVI GTATCC 1 cut(s) 983
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 392, 500
BfmI CTRYAG 2 cut(s) 403, 687
BfoI RGCGCY 1 cut(s) 517
BfrI CTTAAG 1 cut(s) 347
BfuI GTATCC 1 cut(s) 983
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme18I GGWCC 2 cut(s) 88, 193
BmgT120I GGNCC 4 cut(s) 39, 88, 193, 552
BmiI GGNNCC 2 cut(s) 195, 589
BmsI GCATC 3 cut(s) 189, 220, 253
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 55, 167
BpuEI CTTGAG 3 cut(s) 485, 775, 806
BsaAI YACGTR 2 cut(s) 416, 491
BsaBI GATNNNNATC 1 cut(s) 969
BsaHI GRCGYC 3 cut(s) 102, 382, 437
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 97, 283
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 969
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 268, 1006
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 3 cut(s) 33, 97, 283
BseMII CTCAG 3 cut(s) 142, 660, 936
BseNI ACTGG 1 cut(s) 86
BsePI GCGCGC 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 473
BseYI CCCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 897
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 40, 553
BshNI GGYRCC 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 33, 97, 283
BsmAI GTCTC 1 cut(s) 389
BsmBI CGTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 40, 553
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
BspACI CCGC 4 cut(s) 134, 274, 300, 369
BspANI GGCC 2 cut(s) 40, 553
BspCNI CTCAG 3 cut(s) 141, 659, 937
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 195, 589
BspPI GGATC 3 cut(s) 294, 383, 581
BspT107I GGYRCC 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 95
BssHII GCGCGC 1 cut(s) 153
BssMI GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
BssNI GRCGYC 3 cut(s) 102, 382, 437
Bst4CI ACNGT 4 cut(s) 109, 365, 867, 959
BstACI GRCGYC 3 cut(s) 102, 382, 437
BstAFI CTTAAG 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 2 cut(s) 416, 491
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 128, 646, 945
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 268, 1006
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 7 cut(s) 155, 157, 180, 210, 516, 804, 873
BstKTI GATC 8 cut(s) 289, 343, 378, 471, 576, 799, 823, 1048
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 82, 186
BstNSI RCATGY 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 403, 687
BstUI CGCG 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuI GTATCC 1 cut(s) 983
BsuRI GGCC 2 cut(s) 40, 553
BtgI CCRYGG 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 2 cut(s) 268, 1006
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 4 cut(s) 288, 357, 583, 654
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 7 cut(s) 155, 157, 180, 210, 516, 804, 873
Cfr13I GGNCC 4 cut(s) 39, 88, 193, 552
CseI GACGC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 492, 909
CviAII CATG 5 cut(s) 169, 202, 220, 247, 918
CviQI GTAC 2 cut(s) 492, 909
DdeI CTNAG 3 cut(s) 128, 646, 945
DpnI GATC 8 cut(s) 288, 342, 377, 470, 575, 798, 822, 1047
DpnII GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
DraIII CACNNNGTG 2 cut(s) 283, 920
Eco47I GGWCC 2 cut(s) 88, 193
Eco57I CTGAAG 1 cut(s) 845
Eco72I CACGTG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 5 cut(s) 172, 205, 223, 250, 921
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 168, 201, 219, 246, 917
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 2 cut(s) 275, 1013
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 392, 500
GlaI GCGC 7 cut(s) 154, 156, 179, 209, 515, 803, 872
GluI GCNGC 1 cut(s) 274
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 2 cut(s) 55, 167
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 2 cut(s) 40, 553
HapII CCGG 1 cut(s) 388
HgaI GACGC 1 cut(s) 426
HhaI GCGC 7 cut(s) 155, 157, 180, 210, 516, 804, 873
Hin1I GRCGYC 3 cut(s) 102, 382, 437
Hin1II CATG 5 cut(s) 172, 205, 223, 250, 921
Hin6I GCGC 7 cut(s) 153, 155, 178, 208, 514, 802, 871
HinP1I GCGC 7 cut(s) 153, 155, 178, 208, 514, 802, 871
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 9 cut(s) 126, 142, 656, 733, 763, 788, 884, 941, 1038
HpaII CCGG 1 cut(s) 388
HphI GGTGA 3 cut(s) 97, 641, 733
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 6 cut(s) 131, 380, 825, 946, 1000, 1045
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 4 cut(s) 245, 338, 341, 442
HpyAV CCTTC 4 cut(s) 101, 728, 820, 884
HpyCH4III ACNGT 4 cut(s) 109, 365, 867, 959
HpyCH4IV ACGT 4 cut(s) 102, 382, 415, 490
HpyCH4V TGCA 4 cut(s) 168, 189, 480, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 186
HpyF3I CTNAG 3 cut(s) 128, 646, 945
HpySE526I ACGT 4 cut(s) 102, 382, 415, 490
Hsp92I GRCGYC 3 cut(s) 102, 382, 437
Hsp92II CATG 5 cut(s) 172, 205, 223, 250, 921
HspAI GCGC 7 cut(s) 153, 155, 178, 208, 514, 802, 871
Kzo9I GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
LmnI GCTCC 2 cut(s) 460, 830
LweI GCATC 3 cut(s) 189, 220, 253
MaeI CTAG 2 cut(s) 392, 500
MaeII ACGT 4 cut(s) 102, 382, 415, 490
MaeIII GTNAC 3 cut(s) 103, 789, 920
MalI GATC 8 cut(s) 288, 342, 377, 470, 575, 798, 822, 1047
MbiI CCGCTC 1 cut(s) 134
MboI GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
MboII GAAGA 2 cut(s) 34, 772
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 4 cut(s) 542, 557, 858, 902
MlyI GAGTC 2 cut(s) 120, 797
MnlI CCTC 8 cut(s) 30, 38, 207, 451, 534, 750, 789, 940
Mph1103I ATGCAT 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 3 cut(s) 348, 861, 984
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 82, 186
NdeII GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
NlaIII CATG 5 cut(s) 172, 205, 223, 250, 921
NlaIV GGNNCC 2 cut(s) 195, 589
NmuCI GTSAC 3 cut(s) 103, 789, 920
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 250
PauI GCGCGC 1 cut(s) 153
PciI ACATGT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 7 cut(s) 142, 656, 733, 763, 884, 941, 1038
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 120, 796
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
PpsI GAGTC 2 cut(s) 120, 796
Ppu21I YACGTR 2 cut(s) 416, 491
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 246
PshAI GACNNNNGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 193
PspCI CACGTG 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 195, 589
PspPI GGNCC 4 cut(s) 39, 88, 193, 552
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 1 cut(s) 468
PteI GCGCGC 1 cut(s) 153
RsaI GTAC 2 cut(s) 493, 910
RsaNI GTAC 2 cut(s) 492, 909
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 348, 861, 984
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 8 cut(s) 286, 340, 375, 468, 573, 796, 820, 1045
Sau96I GGNCC 4 cut(s) 39, 88, 193, 552
SchI GAGTC 2 cut(s) 120, 797
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 3 cut(s) 189, 220, 253
SfcI CTRYAG 2 cut(s) 403, 687
SinI GGWCC 2 cut(s) 88, 193
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 4 cut(s) 347, 464, 754, 785
SmoI CTYRAG 4 cut(s) 347, 464, 754, 785
Sse9I AATT 4 cut(s) 542, 557, 858, 902
SsiI CCGC 4 cut(s) 134, 274, 300, 369
SspMI CTAG 2 cut(s) 392, 500
TaaI ACNGT 4 cut(s) 109, 365, 867, 959
TaiI ACGT 4 cut(s) 105, 385, 418, 493
TaqI TCGA 7 cut(s) 113, 124, 138, 216, 309, 321, 440
TasI AATT 4 cut(s) 542, 557, 858, 902
TatI WGTACW 1 cut(s) 908
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 7 cut(s) 142, 656, 733, 763, 884, 941, 1038
Tru1I TTAA 3 cut(s) 348, 861, 984
Tru9I TTAA 3 cut(s) 348, 861, 984
TscAI CASTG 4 cut(s) 288, 364, 583, 654
TseFI GTSAC 3 cut(s) 103, 789, 920
Tsp45I GTSAC 3 cut(s) 103, 789, 920
TspDTI ATGAA 3 cut(s) 690, 716, 915
TspRI CASTG 4 cut(s) 288, 364, 583, 654
Van91I CCANNNNNTGG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 88, 193
XapI RAATTY 2 cut(s) 557, 902
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 392, 500
ZraI GACGTC 2 cut(s) 103, 383
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.