Rh5CG129500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000331
Physical Location & Seq
Forward (+)
10759964 .. 10761342
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG129500.1

Sequence Viewer

Length: 582 bp
ATGCGCAAATCATCCAGAAGAACCGCCCACGGTGGCCGACACCGAAACTGGACGGAACTCCCAGACGACATCACGGCGTCGATACTGTCACGGCTGGGAACGCTCGAGATCCTCAGGACGGCTCAGAGGGTATGCATGACGTGGCGAAGAATCTGCAAGGACAACTCTCTGGTTTGGCAATCCATCTACATCCACGATGAACATTACATCGACATGAGCTATTTGGACAAGATCTGCCGCCACGTCATTGATCTTAGCTCTGGTAATCTTGTGGATATCAGTATTGAGTACATCGGCACCGATCAACTCCTCAAGTACATGGCTGAGAGCTCAAGCGGAATCAAACGCCTCCGATTCGTGAATTGCACTAGCTTAACAGACGAGGGATTCAGCGAAGTGGCTTCGAAACTTCCCTTGCTGGAAGACCTTGACATTTCGAAATGTGATAACATCTCATCTAAATCTCTACAGGTGGTTACGTGCTCATTCCCTCTTTTGAAATCGTGCAAATTGAATTCACTCAAACTCAATATATCAAGTGAAAGCAGGTGGCTTTGTAAGGTGGATTATTGTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

193

Amino Acids

22.07

Weight (kDa)

8.36

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 64 2.5e-10 F-box-like
F-box PF00646 17 - 57 1.5e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 537
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 3 cut(s) 24, 238, 336
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 514
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 2 cut(s) 290, 317
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 499, 514
AjiI CACGTC 2 cut(s) 141, 244
AluBI AGCT 4 cut(s) 219, 258, 330, 372
AluI AGCT 4 cut(s) 219, 258, 330, 372
Alw21I GWGCWC 2 cut(s) 332, 485
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 514
AspLEI GCGC 1 cut(s) 6
AsuII TTCGAA 2 cut(s) 404, 437
AvaI CYCGRG 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 113
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 332, 485
BccI CCATC 1 cut(s) 191
BceAI ACGGC 3 cut(s) 90, 107, 135
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 537
BglII AGATCT 1 cut(s) 231
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 2 cut(s) 141, 244
BmiI GGNNCC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 429
Bpu14I TTCGAA 2 cut(s) 404, 437
BpuEI CTTGAG 2 cut(s) 296, 316
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 11, 189
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 127, 137, 315
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 332, 485
BsiHKCI CYCGRG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 104
Bsp119I TTCGAA 2 cut(s) 404, 437
Bsp1286I GDGCHC 2 cut(s) 332, 485
Bsp143I GATC 4 cut(s) 108, 231, 250, 301
BspACI CCGC 3 cut(s) 24, 238, 336
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 3 cut(s) 126, 136, 316
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 537
BspPI GGATC 1 cut(s) 103
BspT104I TTCGAA 2 cut(s) 404, 437
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 108, 231, 250, 301
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 32, 87
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 480
BstBI TTCGAA 2 cut(s) 404, 437
BstDEI CTNAG 4 cut(s) 113, 123, 254, 324
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 11, 189
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 111, 234, 253, 304
BstMBI GATC 4 cut(s) 108, 231, 250, 301
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 467
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 2 cut(s) 108, 231
BstYI RGATCY 2 cut(s) 108, 231
Bsu36I CCTNAGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 28
BtrI CACGTC 2 cut(s) 141, 244
BtsCI GGATG 2 cut(s) 11, 189
BveI ACCTGC 1 cut(s) 537
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 289, 316
CviAII CATG 4 cut(s) 136, 214, 319, 575
CviQI GTAC 2 cut(s) 289, 316
DdeI CTNAG 4 cut(s) 113, 123, 254, 324
DpnI GATC 4 cut(s) 110, 233, 252, 303
DpnII GATC 4 cut(s) 108, 231, 250, 301
EaeI YGGCCR 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 330
Eco81I CCTNAGG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 514
EcoRV GATATC 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 332
FaeI CATG 4 cut(s) 139, 217, 322, 578
FaiI YATR 6 cut(s) 133, 137, 215, 320, 533, 576
FatI CATG 4 cut(s) 135, 213, 318, 574
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 238
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 4 cut(s) 139, 217, 322, 578
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 4 cut(s) 150, 339, 354, 387
Hpy188I TCNGA 2 cut(s) 126, 353
Hpy188III TCNNGA 4 cut(s) 15, 106, 115, 358
Hpy99I CGWCG 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 32, 87
HpyCH4IV ACGT 3 cut(s) 140, 243, 479
HpyCH4V TGCA 4 cut(s) 135, 156, 366, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 4 cut(s) 113, 123, 254, 324
HpySE526I ACGT 3 cut(s) 140, 243, 479
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 4 cut(s) 139, 217, 322, 578
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 108, 231, 250, 301
MaeI CTAG 1 cut(s) 369
MaeII ACGT 3 cut(s) 140, 243, 479
MaeIII GTNAC 2 cut(s) 87, 475
MalI GATC 4 cut(s) 110, 233, 252, 303
MboI GATC 4 cut(s) 108, 231, 250, 301
MboII GAAGA 3 cut(s) 30, 159, 434
MflI RGATCY 2 cut(s) 108, 231
MhlI GDGCHC 2 cut(s) 332, 485
MluCI AATT 3 cut(s) 361, 509, 514
MnlI CCTC 6 cut(s) 120, 122, 320, 359, 376, 501
Mph1103I ATGCAT 1 cut(s) 137
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 4 cut(s) 108, 231, 250, 301
NlaIII CATG 4 cut(s) 139, 217, 322, 578
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 87
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 137
NspV TTCGAA 2 cut(s) 404, 437
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 537
PfeI GAWTC 4 cut(s) 150, 339, 354, 387
PkrI GCNGC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 2 cut(s) 108, 231
RsaI GTAC 2 cut(s) 290, 317
RsaNI GTAC 2 cut(s) 289, 316
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 4 cut(s) 108, 231, 250, 301
SduI GDGCHC 2 cut(s) 332, 485
SfcI CTRYAG 1 cut(s) 467
Sfr274I CTCGAG 1 cut(s) 104
SfuI TTCGAA 2 cut(s) 404, 437
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 3 cut(s) 104, 311, 331
SmoI CTYRAG 3 cut(s) 104, 311, 331
Sse9I AATT 3 cut(s) 361, 509, 514
SsiI CCGC 3 cut(s) 24, 238, 336
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 332
TaaI ACNGT 2 cut(s) 32, 87
TaiI ACGT 3 cut(s) 143, 246, 482
TaqI TCGA 5 cut(s) 80, 105, 210, 404, 437
TasI AATT 3 cut(s) 361, 509, 514
TatI WGTACW 2 cut(s) 288, 315
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 4 cut(s) 150, 339, 354, 387
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 68
XapI RAATTY 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.