FvH4_6g48070

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000331
Physical Location & Seq
Reverse (-)
36267465 .. 36268227
763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48070.t1

Sequence Viewer

Length: 693 bp
ATGATGTGGCGCACCATCAACATATGCGATATTTGGGTTTATAACAACTCCACATCATGGCATAAGAATGCAAAGAAGATGGAAAAGATCTGCCGCTACGCGGTTAATCGTGGCCGTAGCAATGTCGTCGATATAAGTCTCGAGAACTTGGGCTCCGATGGCCTCCTCTGGGATATCACTAGCAGATCGAAGAAAATCAGACGCCTCCGTCTGGTTGCATACACAACTGAAGCTCTTGAATCCATCGGCAGGCACTGCCCTCTTTTGAAGTCACTGAAACTGAACAAGCGACATGATATTCCATATGTCCGGGACGGGTGTAAACTTGCCCAACGACACCACCATTATCAGGTTTTTGGAAGTAAGAAGAGTAGCAAGGGATTACATGATGATGGTGATGCACTTGCTATAGCAGGAACAATGCATTGTTTACAAAAGCTCCAGATATTTGGAAATGAGGTGACTAACATGGGATTACAAGCCATACTTGATGGTTGTCCACGTCTTGAGTCACTTGATCTGCGTCGTTGTTACAATCTTAAGGTGGAAGGATATTTAGAGTTGAGATGCCTTCAACGAATTAAAGAGTTGCGGCTTCCTGATGATTCTACAGATGACTATGAACTTGTTTCCACAGATGAAATTGTTTACGAACTATACCGGACTTCTTATAGAAATAGAACGTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

231

Amino Acids

26.72

Weight (kDa)

9.15

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 57
AccII CGCG 1 cut(s) 101
AciI CCGC 3 cut(s) 94, 101, 592
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 202
AfiI CCNNNNNNNGG 6 cut(s) 57, 100, 169, 211, 249, 349
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 3 cut(s) 239, 268, 575
AjiI CACGTC 1 cut(s) 503
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 233, 439
AluI AGCT 2 cut(s) 233, 439
Alw26I GTCTC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 2 cut(s) 112, 160
AspLEI GCGC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 407, 472
AvaI CYCGRG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 155
BccI CCATC 6 cut(s) 23, 73, 152, 251, 386, 485
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 2 cut(s) 408, 609
BfrI CTTAAG 1 cut(s) 539
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 94, 593
BlsI GCNGC 2 cut(s) 95, 594
Bme1390I CCNGG 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 2 cut(s) 388, 557
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 660
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 423, 453
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 100, 169, 211, 249, 349
Bse3DI GCAATG 1 cut(s) 127
BseLI CCNNNNNNNGG 6 cut(s) 57, 100, 169, 211, 249, 349
BseMI GCAATG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 114, 162
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 310, 661
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 6 cut(s) 57, 100, 169, 211, 249, 349
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 114, 162
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 87, 185, 517
BspACI CCGC 3 cut(s) 94, 101, 592
BspANI GGCC 2 cut(s) 114, 162
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 154
BspTI CTTAAG 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 127
BssMI GATC 3 cut(s) 87, 185, 517
BssNI GRCGYC 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 202
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 251
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 3 cut(s) 90, 188, 520
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 87, 185, 517
BstMWI GCNNNNNNNGC 2 cut(s) 159, 255
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 408, 609
BstUI CGCG 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 2 cut(s) 114, 162
BtrI CACGTC 1 cut(s) 503
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 272
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 12
CseI GACGC 2 cut(s) 210, 512
CviAII CATG 4 cut(s) 57, 293, 386, 469
CviJI RGCY 7 cut(s) 114, 153, 162, 233, 439, 482, 595
CviKI_1 RGCY 7 cut(s) 114, 153, 162, 233, 439, 482, 595
DpnI GATC 3 cut(s) 89, 187, 519
DpnII GATC 3 cut(s) 87, 185, 517
DrdI GACNNNNNNGTC 1 cut(s) 207
DseDI GACNNNNNNGTC 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 4 cut(s) 60, 296, 389, 472
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 326
FatI CATG 4 cut(s) 56, 292, 385, 468
FauNDI CATATG 2 cut(s) 23, 304
Fnu4HI GCNGC 2 cut(s) 94, 593
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 94, 593
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 94, 593
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 2 cut(s) 114, 162
HapII CCGG 2 cut(s) 310, 661
HgaI GACGC 2 cut(s) 210, 512
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 4 cut(s) 60, 296, 389, 472
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 3 cut(s) 239, 509, 605
HpaII CCGG 2 cut(s) 310, 661
HphI GGTGA 2 cut(s) 407, 472
Hpy166II GTNNAC 4 cut(s) 323, 431, 500, 649
Hpy188I TCNGA 2 cut(s) 157, 200
Hpy188III TCNNGA 6 cut(s) 140, 142, 236, 442, 506, 599
Hpy8I GTNNAC 4 cut(s) 323, 431, 500, 649
Hpy99I CGWCG 2 cut(s) 131, 528
HpyAV CCTTC 2 cut(s) 542, 581
HpyCH4IV ACGT 2 cut(s) 502, 683
HpyCH4V TGCA 4 cut(s) 71, 218, 401, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 255
HpySE526I ACGT 2 cut(s) 502, 683
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 4 cut(s) 60, 296, 389, 472
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 87, 185, 517
LmnI GCTCC 2 cut(s) 158, 444
LpnPI CCDG 9 cut(s) 154, 197, 235, 323, 335, 399, 455, 612, 674
LweI GCATC 2 cut(s) 388, 557
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 502, 683
MaeIII GTNAC 4 cut(s) 270, 460, 510, 530
MalI GATC 3 cut(s) 89, 187, 519
MboI GATC 3 cut(s) 87, 185, 517
MboII GAAGA 3 cut(s) 88, 202, 379
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 579, 642
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 5 cut(s) 173, 176, 215, 270, 451
Mph1103I ATGCAT 1 cut(s) 426
MseI TTAA 3 cut(s) 105, 540, 582
MslI CAYNNNNRTG 2 cut(s) 66, 390
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 2 cut(s) 310, 661
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 159, 255
NciI CCSGG 1 cut(s) 311
NdeI CATATG 2 cut(s) 23, 304
NdeII GATC 3 cut(s) 87, 185, 517
NlaIII CATG 4 cut(s) 60, 296, 389, 472
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 270, 460, 510
NsiI ATGCAT 1 cut(s) 426
PaeR7I CTCGAG 1 cut(s) 140
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 239, 605
PflMI CCANNNNNTGG 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 2 cut(s) 95, 594
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 87
RseI CAYNNNNRTG 2 cut(s) 66, 390
SaqAI TTAA 3 cut(s) 105, 540, 582
SatI GCNGC 2 cut(s) 94, 593
Sau3AI GATC 3 cut(s) 87, 185, 517
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 235, 354, 441, 462, 505, 546, 686
SfaNI GCATC 2 cut(s) 388, 557
SfcI CTRYAG 2 cut(s) 408, 609
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 66, 390
SmlI CTYRAG 3 cut(s) 140, 506, 539
SmoI CTYRAG 3 cut(s) 140, 506, 539
Sse9I AATT 2 cut(s) 579, 642
SsiI CCGC 3 cut(s) 94, 101, 592
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 309
TaiI ACGT 2 cut(s) 505, 686
TaqI TCGA 3 cut(s) 129, 141, 188
TasI AATT 2 cut(s) 579, 642
TauI GCSGC 2 cut(s) 96, 595
TfiI GAWTC 2 cut(s) 239, 605
Tru1I TTAA 3 cut(s) 105, 540, 582
Tru9I TTAA 3 cut(s) 105, 540, 582
TscAI CASTG 2 cut(s) 260, 279
TseFI GTSAC 3 cut(s) 270, 460, 510
Tsp45I GTSAC 3 cut(s) 270, 460, 510
TspDTI ATGAA 2 cut(s) 636, 654
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 260, 279
Van91I CCANNNNNTGG 1 cut(s) 57
Vha464I CTTAAG 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 140
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.