RLG00000017256

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000331
Physical Location & Seq
Reverse (-)
14536536 .. 14537971
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017256

Sequence Viewer

Length: 780 bp
ATGGCCACATCCTCCTACCAAACCTACCGGCGCCGAACTCGAAGCTACCGGAACTGGCTGGAGCTCCCGGACGACGTCACCGCTTCCATTCTCTCCCGCCTCGGCGCCATAGAAATCCTGACGCGAGCTCAGAAGGTCTGCATGACCTGGCGCAAAATCTGCAAGGACCGTTTGATGTGGCGCACCATTGACATGAGAAACGACGGCTTTCTCCGCGATTACGACTTCGACTTGGACAAGATGTGCCGCCACGGCGTTGATCGGAGCTCCGGCGGTCTCGTCGACATCAATGTCGAACACTTCGGCACAGATGAGCTCCTCAAGTATATAACTAATAGCTTTGCCTCTGCTCAATCTTTGGAAGTGATTGGGCGCTCTTGCCCTCTTTTGAAATCACTCAAACTGAACAAATATGGGCACAGATACCCGTATCATGAGTGCGATGATGATGCACTTGCTATAGCTTCCACAATGCATGATCTACACCACCTGCAGCTTTGCGGTAATAAGCTAACCAAAGATGGCTTGCAGAAAATCCTTGATTGTTGTCCAAATCTGGAGTCACTTGATCTGCGCAAGTGTTTCAATATCAATTTCGGGGTAGTTTTGAAAAGAAGATGCAGTAGGCGAATTAAAAGTTTACGGCTTCCTGATGATTCCACCGATGACTATGAGTTTGATCGTGCAAATCGTAGGGAGTTATATGCTCAAACCCATTGCGACCCAGATTATGGTGACTTCCTCCTATTTGGACGTTCTGTTTTTGGTCGAGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

260

Amino Acids

30.27

Weight (kDa)

8.44

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 65 9.9e-10 F-box-like
F-box PF00646 19 - 61 1.4e-07 F-box domain
LRR_At5g56370 PF24758 146 - 219 1.8e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 498
AasI GACNNNNNNGTC 1 cut(s) 290
AatII GACGTC 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 498
AccB1I GGYRCC 2 cut(s) 30, 104
AccB7I CCANNNNNTGG 1 cut(s) 731
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 124, 216
AciI CCGC 6 cut(s) 81, 97, 214, 247, 273, 501
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 31, 75, 105
AfiI CCNNNNNNNGG 1 cut(s) 731
AgsI TTSAA 3 cut(s) 391, 586, 610
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 9 cut(s) 45, 64, 128, 267, 316, 339, 464, 496, 511
AluI AGCT 9 cut(s) 45, 64, 128, 267, 316, 339, 464, 496, 511
Alw21I GWGCWC 4 cut(s) 66, 130, 269, 318
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 493
ArsI GACNNNNNNTTYG 4 cut(s) 545, 577, 659, 691
AspLEI GCGC 6 cut(s) 33, 107, 153, 183, 375, 576
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 70, 746
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 30, 104
BanII GRGCYC 4 cut(s) 66, 130, 269, 318
Bbv12I GWGCWC 4 cut(s) 66, 130, 269, 318
BbvI GCAGC 1 cut(s) 505
BccI CCATC 1 cut(s) 515
BceAI ACGGC 3 cut(s) 220, 268, 659
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 148
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 459, 491
BfoI RGCGCY 3 cut(s) 34, 108, 376
BfuAI ACCTGC 1 cut(s) 498
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 247, 494
BlsI GCNGC 2 cut(s) 248, 495
Bme1390I CCNGG 2 cut(s) 68, 148
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 32, 106
BmrFI CCNGG 2 cut(s) 68, 148
BmsI GCATC 2 cut(s) 439, 608
BpmI CTGGAG 2 cut(s) 80, 578
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 3 cut(s) 31, 75, 105
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 100, 250
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 100, 250
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 731
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 1 cut(s) 505
Bsh1236I CGCG 2 cut(s) 124, 216
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 30, 104
BsiHKAI GWGCWC 4 cut(s) 66, 130, 269, 318
BsiSI CCGG 4 cut(s) 28, 49, 68, 270
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 281
Bsp1286I GDGCHC 5 cut(s) 66, 130, 269, 318, 420
Bsp143I GATC 4 cut(s) 259, 478, 568, 679
BspACI CCGC 6 cut(s) 81, 97, 214, 247, 273, 501
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 124, 216
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 32, 106
BspMAI CTGCAG 1 cut(s) 495
BspMI ACCTGC 1 cut(s) 498
BspT107I GGYRCC 2 cut(s) 30, 104
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 100, 250
BssMI GATC 4 cut(s) 259, 478, 568, 679
BssNI GRCGYC 3 cut(s) 31, 75, 105
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 170
BstACI GRCGYC 3 cut(s) 31, 75, 105
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 126, 527
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 2 cut(s) 124, 216
BstH2I RGCGCY 3 cut(s) 34, 108, 376
BstHHI GCGC 6 cut(s) 33, 107, 153, 183, 375, 576
BstKTI GATC 4 cut(s) 262, 481, 571, 682
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 259, 478, 568, 679
BstMWI GCNNNNNNNGC 3 cut(s) 159, 213, 252
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 66, 146
BstSFI CTRYAG 2 cut(s) 459, 491
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 124, 216
BstV1I GCAGC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 8
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 126, 527
CciI TCATGA 1 cut(s) 433
CfoI GCGC 6 cut(s) 33, 107, 153, 183, 375, 576
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 1 cut(s) 130
CviAII CATG 4 cut(s) 142, 193, 434, 476
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 2 cut(s) 32, 106
DpnI GATC 4 cut(s) 261, 480, 570, 681
DpnII GATC 4 cut(s) 259, 478, 568, 679
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 4 cut(s) 64, 128, 267, 316
Eco24I GRGCYC 4 cut(s) 66, 130, 269, 318
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 4 cut(s) 64, 128, 267, 316
EcoICRI GAGCTC 4 cut(s) 64, 128, 267, 316
EcoRII CCWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 477
EcoT38I GRGCYC 4 cut(s) 66, 130, 269, 318
EgeI GGCGCC 2 cut(s) 32, 106
EheI GGCGCC 2 cut(s) 32, 106
FaeI CATG 4 cut(s) 145, 196, 437, 479
FatI CATG 4 cut(s) 141, 192, 433, 475
FauI CCCGC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 247, 494
FriOI GRGCYC 4 cut(s) 66, 130, 269, 318
Fsp4HI GCNGC 2 cut(s) 247, 494
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 6 cut(s) 32, 106, 152, 182, 374, 575
GluI GCNGC 2 cut(s) 247, 494
GsuI CTGGAG 2 cut(s) 80, 578
HaeII RGCGCY 3 cut(s) 34, 108, 376
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 28, 49, 68, 270
HgaI GACGC 1 cut(s) 130
HhaI GCGC 6 cut(s) 33, 107, 153, 183, 375, 576
Hin1I GRCGYC 3 cut(s) 31, 75, 105
Hin1II CATG 4 cut(s) 145, 196, 437, 479
Hin6I GCGC 6 cut(s) 31, 105, 151, 181, 373, 574
HinP1I GCGC 6 cut(s) 31, 105, 151, 181, 373, 574
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 560, 656
HpaII CCGG 4 cut(s) 28, 49, 68, 270
HphI GGTGA 2 cut(s) 70, 746
Hpy166II GTNNAC 2 cut(s) 283, 641
Hpy188I TCNGA 2 cut(s) 132, 264
Hpy188III TCNNGA 5 cut(s) 118, 434, 557, 650, 770
Hpy8I GTNNAC 2 cut(s) 283, 641
Hpy99I CGWCG 3 cut(s) 77, 206, 284
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 75, 754
HpyCH4V TGCA 8 cut(s) 141, 162, 452, 475, 493, 529, 621, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 213, 252
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 75, 754
Hsp92I GRCGYC 3 cut(s) 31, 75, 105
Hsp92II CATG 4 cut(s) 145, 196, 437, 479
HspAI GCGC 6 cut(s) 31, 105, 151, 181, 373, 574
KasI GGCGCC 2 cut(s) 30, 104
Kzo9I GATC 4 cut(s) 259, 478, 568, 679
LmnI GCTCC 5 cut(s) 61, 69, 264, 272, 321
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 439, 608
MaeII ACGT 2 cut(s) 75, 754
MaeIII GTNAC 3 cut(s) 76, 561, 734
MalI GATC 4 cut(s) 261, 480, 570, 681
MboI GATC 4 cut(s) 259, 478, 568, 679
MboII GAAGA 1 cut(s) 627
MhlI GDGCHC 5 cut(s) 66, 130, 269, 318, 420
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 592, 630
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 2 cut(s) 31, 105
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 6 cut(s) 22, 110, 329, 355, 393, 752
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 477
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 28, 49, 68, 270
MspR9I CCNGG 2 cut(s) 68, 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 2 cut(s) 124, 216
MwoI GCNNNNNNNGC 3 cut(s) 159, 213, 252
NarI GGCGCC 2 cut(s) 31, 105
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 259, 478, 568, 679
NlaIII CATG 4 cut(s) 145, 196, 437, 479
NlaIV GGNNCC 2 cut(s) 32, 106
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 3 cut(s) 76, 561, 734
NsbI TGCGCA 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 477
PagI TCATGA 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 688
PfeI GAWTC 1 cut(s) 656
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 2 cut(s) 248, 495
PleI GAGTC 1 cut(s) 568
PluTI GGCGCC 2 cut(s) 34, 108
PpsI GAGTC 1 cut(s) 568
Psp124BI GAGCTC 4 cut(s) 66, 130, 269, 318
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 32, 106
PspPI GGNCC 1 cut(s) 166
PstI CTGCAG 1 cut(s) 495
PsyI GACNNNGTC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 4 cut(s) 66, 130, 269, 318
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 2 cut(s) 247, 494
Sau3AI GATC 4 cut(s) 259, 478, 568, 679
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 68, 148
SduI GDGCHC 5 cut(s) 66, 130, 269, 318, 420
SfaNI GCATC 2 cut(s) 439, 608
SfcI CTRYAG 2 cut(s) 459, 491
SfoI GGCGCC 2 cut(s) 32, 106
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 592, 630
SsiI CCGC 6 cut(s) 81, 97, 214, 247, 273, 501
SspDI GGCGCC 2 cut(s) 30, 104
SstI GAGCTC 4 cut(s) 66, 130, 269, 318
StyD4I CCNGG 2 cut(s) 66, 146
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 2 cut(s) 78, 757
TaqI TCGA 5 cut(s) 40, 228, 282, 294, 769
TasI AATT 2 cut(s) 592, 630
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TseFI GTSAC 3 cut(s) 76, 561, 734
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 3 cut(s) 76, 561, 734
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 282
ZraI GACGTC 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.