FvH4_7g32650

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000331
Physical Location & Seq
Forward (+)
23427581 .. 23429114
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32650.t1

Sequence Viewer

Length: 897 bp
ATGGCCGAACCCTCAAACAAAACCCAGCGACAAGACTGGATCGACCTCCCTGAAGAAATCACAGCTTCTATACTGTCACGGCTGGGAGCCATCGAGATTCTGGTGACCGCTGTGTACGTGTGTACGACATGGCGCATAATCTGCATGGACCCTAGAAACTGGCTCACCATCGACATGCGTGACGATTTGGTCTATGGCGAGTGGCCCTCGCGGTACCCGATGGACAAGTTGTGTAGGAAAGCCATTGATCTTAGCTGTGGCAACCTCGTCGACATCAGTGTGCACAACTTCTGCTCCGATGATCTGCTTAAGTATATCACTGATAGCTGTAGGGGAATCAAACGGCTCTGTTTTGTGCTTTCTGACATAACAAATGATGGACTGGTTGAAGCGGCTCCGAAGCTGCCGCTGCTGGAGGAACTTGAACTTTCACACTGCAACTACAGATTCGACATTCCTTACTTCGAAGACACACCACAAGGCAATCTTGAAGTGATTGGCCGTTTTTGCCCTCTTTTGAAATCATTGAAATTGAACAGGCACAACACTAAAATGTTTTTTGTAGGATGGGATGGCGATGCACTTGCTATAGCAGAAACAATGCATGGTTTACACCACCTTCAGCTTTTCGGAAACAAGCTCACTAGCAATGGCTTGCGCGCCATCCTTGATGGCCGTCCGCTGCTTGAGTCACTTGATCTGCGACATTGTTGGCATATTAATCTGGATGGGGAGTGCTTACATCATTTTGGTCTTAAACTGCATGAAGAATTGAAAAGAAGTTGCATTGATCGTATTAAAAACTTGCGGCTTCCTCATGATTCTAAACATGACTATGAACGTCTTGCCGCACGAAATCTTGTCCACAAGGAGTTTGTGAAGGAATCTGAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

299

Amino Acids

34.44

Weight (kDa)

6.0

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 13 - 59 5e-08 F-box-like
F-box PF00646 13 - 55 1.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 270
AccII CGCG 2 cut(s) 211, 660
AciI CCGC 7 cut(s) 108, 211, 392, 407, 680, 808, 849
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 3 cut(s) 3, 499, 673
AcuI CTGAAG 2 cut(s) 72, 605
AfaI GTAC 3 cut(s) 116, 124, 215
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 7 cut(s) 389, 425, 491, 520, 529, 535, 775
AluBI AGCT 6 cut(s) 65, 255, 327, 403, 625, 640
AluI AGCT 6 cut(s) 65, 255, 327, 403, 625, 640
Alw21I GWGCWC 2 cut(s) 285, 894
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 1 cut(s) 47
AoxI GGCC 4 cut(s) 3, 203, 499, 673
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 403, 409, 682
AseI ATTAAT 1 cut(s) 720
Asp718I GGTACC 1 cut(s) 213
AspLEI GCGC 3 cut(s) 135, 660, 662
AspS9I GGNCC 2 cut(s) 148, 204
AsuHPI GGTGA 2 cut(s) 115, 157
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 285, 894
BbvI GCAGC 3 cut(s) 390, 396, 669
BccI CCATC 9 cut(s) 98, 176, 214, 371, 561, 566, 665, 671, 722
BceAI ACGGC 4 cut(s) 95, 359, 486, 660
BcgI CGANNNNNNTGC 4 cut(s) 250, 284, 566, 600
BfaI CTAG 2 cut(s) 153, 645
BfmI CTRYAG 3 cut(s) 328, 442, 588
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 7 cut(s) 393, 404, 407, 410, 683, 809, 849
BlsI GCNGC 7 cut(s) 394, 405, 408, 411, 684, 810, 850
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 148, 204
BmiI GGNNCC 4 cut(s) 88, 150, 215, 396
BmsI GCATC 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 707
BsaAI YACGTR 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse1I ACTGG 3 cut(s) 41, 164, 387
Bse3DI GCAATG 1 cut(s) 655
BseGI GGATG 4 cut(s) 572, 577, 663, 733
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 3 cut(s) 41, 164, 387
BsePI GCGCGC 1 cut(s) 658
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 3 cut(s) 390, 396, 669
BseYI CCCAGC 2 cut(s) 24, 82
Bsh1236I CGCG 2 cut(s) 211, 660
BshFI GGCC 4 cut(s) 5, 205, 501, 675
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 2 cut(s) 285, 894
BsnI GGCC 4 cut(s) 5, 205, 501, 675
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 285, 894
Bsp143I GATC 5 cut(s) 39, 247, 301, 697, 790
BspACI CCGC 7 cut(s) 108, 211, 392, 407, 680, 808, 849
BspANI GGCC 4 cut(s) 5, 205, 501, 675
BspCNI CTCAG 1 cut(s) 880
BspFNI CGCG 2 cut(s) 211, 660
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 4 cut(s) 88, 150, 215, 396
BspPI GGATC 1 cut(s) 47
BspT104I TTCGAA 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 3 cut(s) 41, 164, 387
BssHII GCGCGC 1 cut(s) 658
BssMI GATC 5 cut(s) 39, 247, 301, 697, 790
Bst4CI ACNGT 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 656, 660
BstDEI CTNAG 2 cut(s) 251, 888
BstEII GGTNACC 1 cut(s) 103
BstF5I GGATG 4 cut(s) 572, 577, 663, 733
BstFNI CGCG 2 cut(s) 211, 660
BstHHI GCGC 3 cut(s) 135, 660, 662
BstKTI GATC 5 cut(s) 42, 250, 304, 700, 793
BstMBI GATC 5 cut(s) 39, 247, 301, 697, 790
BstMWI GCNNNNNNNGC 3 cut(s) 141, 409, 507
BstNSI RCATGY 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 103
BstSFI CTRYAG 3 cut(s) 328, 442, 588
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 2 cut(s) 211, 660
BstV1I GCAGC 3 cut(s) 390, 396, 669
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 4 cut(s) 5, 205, 501, 675
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 4 cut(s) 572, 577, 663, 733
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 4 cut(s) 283, 318, 433, 892
Cac8I GCNNGC 2 cut(s) 656, 660
CciI TCATGA 1 cut(s) 817
CfoI GCGC 3 cut(s) 135, 660, 662
Cfr13I GGNCC 2 cut(s) 148, 204
Csp6I GTAC 3 cut(s) 115, 123, 214
CviAII CATG 7 cut(s) 129, 145, 175, 605, 764, 818, 830
CviQI GTAC 3 cut(s) 115, 123, 214
DdeI CTNAG 2 cut(s) 251, 888
DpnI GATC 5 cut(s) 41, 249, 303, 699, 792
DpnII GATC 5 cut(s) 39, 247, 301, 697, 790
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 3 cut(s) 3, 499, 673
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 72, 605
Eco91I GGTNACC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 606
FaeI CATG 7 cut(s) 132, 148, 178, 608, 767, 821, 833
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FatI CATG 7 cut(s) 128, 144, 174, 604, 763, 817, 829
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 393, 404, 407, 410, 683, 809, 849
FokI GGATG 4 cut(s) 579, 584, 650, 740
Fsp4HI GCNGC 7 cut(s) 393, 404, 407, 410, 683, 809, 849
FspBI CTAG 2 cut(s) 153, 645
GlaI GCGC 3 cut(s) 134, 659, 661
GluI GCNGC 7 cut(s) 393, 404, 407, 410, 683, 809, 849
GsaI CCCAGC 2 cut(s) 28, 86
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 4 cut(s) 5, 205, 501, 675
HhaI GCGC 3 cut(s) 135, 660, 662
Hin1II CATG 7 cut(s) 132, 148, 178, 608, 767, 821, 833
Hin6I GCGC 3 cut(s) 133, 658, 660
HinP1I GCGC 3 cut(s) 133, 658, 660
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 6 cut(s) 97, 336, 447, 689, 821, 884
HphI GGTGA 2 cut(s) 115, 157
Hpy166II GTNNAC 6 cut(s) 115, 123, 271, 283, 611, 865
Hpy188I TCNGA 5 cut(s) 298, 364, 399, 632, 889
Hpy188III TCNNGA 4 cut(s) 94, 488, 725, 818
Hpy8I GTNNAC 6 cut(s) 115, 123, 271, 283, 611, 865
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 629, 874
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 2 cut(s) 117, 841
HpyCH4V TGCA 7 cut(s) 144, 283, 438, 581, 604, 763, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 409, 507
HpyF3I CTNAG 2 cut(s) 251, 888
HpySE526I ACGT 2 cut(s) 117, 841
Hsp92II CATG 7 cut(s) 132, 148, 178, 608, 767, 821, 833
HspAI GCGC 3 cut(s) 133, 658, 660
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 39, 247, 301, 697, 790
LmnI GCTCC 3 cut(s) 86, 299, 400
Lsp1109I GCAGC 3 cut(s) 390, 396, 669
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 153, 645
MaeII ACGT 2 cut(s) 117, 841
MaeIII GTNAC 4 cut(s) 75, 103, 179, 690
MalI GATC 5 cut(s) 41, 249, 303, 699, 792
MboI GATC 5 cut(s) 39, 247, 301, 697, 790
MboII GAAGA 3 cut(s) 65, 479, 779
MhlI GDGCHC 2 cut(s) 285, 894
MluCI AATT 2 cut(s) 530, 770
MlyI GAGTC 1 cut(s) 698
MnlI CCTC 7 cut(s) 22, 56, 217, 275, 409, 522, 825
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 4 cut(s) 309, 720, 756, 798
MslI CAYNNNNRTG 4 cut(s) 173, 278, 551, 834
MspA1I CMGCKG 3 cut(s) 110, 409, 682
MspCI CTTAAG 1 cut(s) 308
MvnI CGCG 2 cut(s) 211, 660
MwoI GCNNNNNNNGC 3 cut(s) 141, 409, 507
NdeII GATC 5 cut(s) 39, 247, 301, 697, 790
NlaIII CATG 7 cut(s) 132, 148, 178, 608, 767, 821, 833
NlaIV GGNNCC 4 cut(s) 88, 150, 215, 396
NmuCI GTSAC 4 cut(s) 75, 103, 179, 690
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 1 cut(s) 178
NspV TTCGAA 1 cut(s) 465
PagI TCATGA 1 cut(s) 817
PauI GCGCGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 5 cut(s) 97, 336, 447, 821, 884
PkrI GCNGC 7 cut(s) 394, 405, 408, 411, 684, 810, 850
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
Ppu21I YACGTR 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 720
PspEI GGTNACC 1 cut(s) 103
PspFI CCCAGC 2 cut(s) 24, 82
PspN4I GGNNCC 4 cut(s) 88, 150, 215, 396
PspPI GGNCC 2 cut(s) 148, 204
PteI GCGCGC 1 cut(s) 658
RsaI GTAC 3 cut(s) 116, 124, 215
RsaNI GTAC 3 cut(s) 115, 123, 214
RseI CAYNNNNRTG 4 cut(s) 173, 278, 551, 834
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 4 cut(s) 309, 720, 756, 798
SatI GCNGC 7 cut(s) 393, 404, 407, 410, 683, 809, 849
Sau3AI GATC 5 cut(s) 39, 247, 301, 697, 790
Sau96I GGNCC 2 cut(s) 148, 204
SchI GAGTC 1 cut(s) 698
SduI GDGCHC 2 cut(s) 285, 894
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 3 cut(s) 328, 442, 588
SfuI TTCGAA 1 cut(s) 465
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 4 cut(s) 173, 278, 551, 834
SmlI CTYRAG 2 cut(s) 308, 686
SmoI CTYRAG 2 cut(s) 308, 686
Sse9I AATT 2 cut(s) 530, 770
SsiI CCGC 7 cut(s) 108, 211, 392, 407, 680, 808, 849
SspMI CTAG 2 cut(s) 153, 645
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 2 cut(s) 120, 844
TaqI TCGA 6 cut(s) 42, 93, 171, 270, 450, 465
TasI AATT 2 cut(s) 530, 770
TauI GCSGC 4 cut(s) 395, 409, 811, 851
TfiI GAWTC 5 cut(s) 97, 336, 447, 821, 884
Tru1I TTAA 4 cut(s) 309, 720, 756, 798
Tru9I TTAA 4 cut(s) 309, 720, 756, 798
TscAI CASTG 3 cut(s) 283, 325, 440
TseFI GTSAC 4 cut(s) 75, 103, 179, 690
TseI GCWGC 3 cut(s) 403, 409, 682
Tsp45I GTSAC 4 cut(s) 75, 103, 179, 690
TspDTI ATGAA 2 cut(s) 780, 852
TspRI CASTG 3 cut(s) 283, 325, 440
Vha464I CTTAAG 1 cut(s) 308
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 148
VspI ATTAAT 1 cut(s) 720
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 2 cut(s) 153, 645
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.