Rh5CG127900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000331
Physical Location & Seq
Forward (+)
10635495 .. 10637644
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG127900.1

Sequence Viewer

Length: 687 bp
ATGTCCGATGTACCTGACCGGCGCCGGCTCTTAAGCCGAAGCTGGACTGAATTCCAAGATGACGTCATGTCGTCGATACTGGCACGTCTCGGAGCGATCGAGATCCTGCAGACTGCTCAGAAGGTTTGCACGACGTGGCGCAGAATCAGCAAGCAGCCTTCGATGTGGCGCAGAATTGACATGAGTAATAAGTGGAGCTTCCCAAGCGATCAGCCTTTCGAGTTGGATAAGATGTGCCGTCACGCCATTGATCGCAGCTGTGGTAGTCTTGTTGAAATCAAACTCCAGAACTTCGGTAACAATGAACTCCTTAAGTACATAACTGATAGTTCAAGAGGAATCAGAAGCCTACAGCTAGTGAATTGTTACATAAAAGACGAGGGCTTCAGTGAAGTGGCTTCGAAACTTTCTGTATTGGAAGACCTTGAAATTTCAGTATGTGGTGGTTACATCTCACATAAAACTGTGGAAGTGGTTGGACAAGCCTGTCCTCTCTTGAAATCATTCAAACTGAACTGTTTTAGATTTATGCTCAACAAACAGAACTCGAGGCTAAGTTTGACAACACGCGATGACTTGAGGGAAAGTTTGAGAACATGTGATGTGGAAGCACTTGCTATATCAAGAACAATGCAGGATTTACACCACCTCAAGCTTGTCGGAAATAGGCTGACTAATGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

228

Amino Acids

26.17

Weight (kDa)

8.79

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 61 1.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 486
AatII GACGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 21
AccII CGCG 1 cut(s) 570
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 2 cut(s) 50, 429
AcuI CTGAAG 1 cut(s) 370
AcyI GRCGYC 2 cut(s) 22, 63
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 2 cut(s) 12, 317
AflII CTTAAG 2 cut(s) 31, 311
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 5 cut(s) 275, 333, 428, 499, 508
AhdI GACNNNNNGTC 1 cut(s) 67
AjiI CACGTC 2 cut(s) 86, 135
AluBI AGCT 5 cut(s) 42, 198, 258, 355, 655
AluI AGCT 5 cut(s) 42, 198, 258, 355, 655
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 154, 255
ApoI RAATTY 2 cut(s) 50, 429
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 3 cut(s) 24, 141, 171
AsuII TTCGAA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 166, 267
BccI CCATC 1 cut(s) 674
BceAI ACGGC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 2 cut(s) 107, 350
BfoI RGCGCY 1 cut(s) 25
BfrI CTTAAG 2 cut(s) 31, 311
BisI GCNGC 2 cut(s) 155, 256
BlsI GCNGC 2 cut(s) 156, 257
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 2 cut(s) 86, 135
BmiI GGNNCC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 2 cut(s) 598, 635
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 2 cut(s) 22, 63
Bse118I RCCGGY 2 cut(s) 18, 24
Bse1I ACTGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 101
BseJI GATNNNNATC 1 cut(s) 101
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 166, 267
Bsh1236I CGCG 1 cut(s) 570
Bsh1285I CGRYCG 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 19, 25
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 547
Bsp119I TTCGAA 1 cut(s) 401
Bsp143I GATC 4 cut(s) 96, 102, 208, 250
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 2 cut(s) 31, 311
BsrFI RCCGGY 2 cut(s) 18, 24
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 2 cut(s) 18, 24
BssMI GATC 4 cut(s) 96, 102, 208, 250
BssNI GRCGYC 2 cut(s) 22, 63
Bst4CI ACNGT 2 cut(s) 466, 518
BstACI GRCGYC 2 cut(s) 22, 63
BstAFI CTTAAG 2 cut(s) 31, 311
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 26, 152
BstDEI CTNAG 2 cut(s) 117, 554
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 3 cut(s) 24, 141, 171
BstKTI GATC 4 cut(s) 99, 105, 211, 253
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 4 cut(s) 96, 102, 208, 250
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 147, 204
BstNSI RCATGY 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 107, 350
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 166, 267
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 2 cut(s) 86, 135
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 26, 152
CfoI GCGC 3 cut(s) 24, 141, 171
Cfr10I RCCGGY 2 cut(s) 18, 24
Csp6I GTAC 2 cut(s) 11, 316
CviAII CATG 3 cut(s) 67, 181, 597
CviQI GTAC 2 cut(s) 11, 316
DdeI CTNAG 2 cut(s) 117, 554
DinI GGCGCC 1 cut(s) 23
DpnI GATC 4 cut(s) 98, 104, 210, 252
DpnII GATC 4 cut(s) 96, 102, 208, 250
DraIII CACNNNGTG 1 cut(s) 135
DrdI GACNNNNNNGTC 1 cut(s) 486
DriI GACNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 50
EgeI GGCGCC 1 cut(s) 23
EheI GGCGCC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 3 cut(s) 70, 184, 600
FaiI YATR 9 cut(s) 68, 182, 320, 371, 439, 459, 530, 598, 620
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 3 cut(s) 66, 180, 596
Fnu4HI GCNGC 2 cut(s) 155, 256
Fsp4HI GCNGC 2 cut(s) 155, 256
FspBI CTAG 1 cut(s) 356
GlaI GCGC 3 cut(s) 23, 140, 170
GluI GCNGC 2 cut(s) 155, 256
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 25
HapII CCGG 2 cut(s) 19, 25
HhaI GCGC 3 cut(s) 24, 141, 171
Hin1I GRCGYC 2 cut(s) 22, 63
Hin1II CATG 3 cut(s) 70, 184, 600
Hin6I GCGC 3 cut(s) 22, 139, 169
HinP1I GCGC 3 cut(s) 22, 139, 169
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 2 cut(s) 144, 339
HpaII CCGG 2 cut(s) 19, 25
Hpy188I TCNGA 5 cut(s) 7, 92, 120, 344, 662
Hpy188III TCNNGA 5 cut(s) 100, 286, 333, 496, 624
Hpy99I CGWCG 2 cut(s) 76, 136
HpyAV CCTTC 2 cut(s) 115, 168
HpyCH4III ACNGT 2 cut(s) 466, 518
HpyCH4IV ACGT 3 cut(s) 63, 85, 134
HpyCH4V TGCA 3 cut(s) 109, 129, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 204
HpyF3I CTNAG 2 cut(s) 117, 554
HpySE526I ACGT 3 cut(s) 63, 85, 134
Hsp92I GRCGYC 2 cut(s) 22, 63
Hsp92II CATG 3 cut(s) 70, 184, 600
HspAI GCGC 3 cut(s) 22, 139, 169
KasI GGCGCC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 4 cut(s) 96, 102, 208, 250
LmnI GCTCC 2 cut(s) 92, 195
LpnPI CCDG 9 cut(s) 27, 28, 32, 38, 65, 119, 299, 499, 620
Lsp1109I GCAGC 2 cut(s) 166, 267
MaeI CTAG 1 cut(s) 356
MaeII ACGT 3 cut(s) 63, 85, 134
MaeIII GTNAC 4 cut(s) 239, 296, 365, 446
MalI GATC 4 cut(s) 98, 104, 210, 252
MboI GATC 4 cut(s) 96, 102, 208, 250
MboII GAAGA 1 cut(s) 431
MflI RGATCY 1 cut(s) 102
MluCI AATT 4 cut(s) 50, 174, 361, 429
Mly113I GGCGCC 1 cut(s) 22
MmeI TCCRAC 3 cut(s) 204, 457, 640
MnlI CCTC 6 cut(s) 329, 373, 501, 543, 573, 659
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 2 cut(s) 32, 312
MspA1I CMGCKG 1 cut(s) 258
MspCI CTTAAG 2 cut(s) 31, 311
MspI CCGG 2 cut(s) 19, 25
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 147, 204
NaeI GCCGGC 1 cut(s) 26
NarI GGCGCC 1 cut(s) 22
NdeII GATC 4 cut(s) 96, 102, 208, 250
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 3 cut(s) 70, 184, 600
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 600
NspV TTCGAA 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 547
PciI ACATGT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 2 cut(s) 144, 339
PkrI GCNGC 2 cut(s) 156, 257
Ple19I CGATCG 1 cut(s) 99
PluTI GGCGCC 1 cut(s) 25
PscI ACATGT 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 547
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 102
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 2 cut(s) 12, 317
RsaNI GTAC 2 cut(s) 11, 316
SaqAI TTAA 2 cut(s) 32, 312
SatI GCNGC 2 cut(s) 155, 256
Sau3AI GATC 4 cut(s) 96, 102, 208, 250
SfcI CTRYAG 2 cut(s) 107, 350
SfoI GGCGCC 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 401
SlaI CTCGAG 1 cut(s) 547
SmlI CTYRAG 5 cut(s) 31, 311, 547, 577, 650
SmoI CTYRAG 5 cut(s) 31, 311, 547, 577, 650
Sse9I AATT 4 cut(s) 50, 174, 361, 429
SspDI GGCGCC 1 cut(s) 21
SspMI CTAG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 466, 518
TaiI ACGT 3 cut(s) 66, 88, 137
TaqI TCGA 6 cut(s) 74, 99, 161, 219, 401, 548
TasI AATT 4 cut(s) 50, 174, 361, 429
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 144, 339
Tru1I TTAA 2 cut(s) 32, 312
Tru9I TTAA 2 cut(s) 32, 312
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 154, 255
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 394
Vha464I CTTAAG 2 cut(s) 31, 311
XapI RAATTY 2 cut(s) 50, 429
XceI RCATGY 1 cut(s) 600
XhoI CTCGAG 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.