Rw5G010370

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000331
Physical Location & Seq
Forward (+)
11342097 .. 11356018
13922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010370.1

Sequence Viewer

Length: 591 bp
ATGAGCGTATCCTCTCATGGAACCACCCCTGGACGAAAGAGGATCTCCCGACACTGGACGGAGCTTCCTGATAATGCTACCTCGTCGATACTCTCACGGCTGGGAGCGAGCGAGATCCTGGAGAGCGCTCAGAAAGTATGCATGAAATGGCGCAAAGTCTGCAAGGACCCTCTCCTCTGGCGCAAGATTGACATGAGCAACGATGGCGATCTCGAAGACATAGACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTAATCGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGCACTTCGGCACCGATGAGCTGCTTGAGTATATCACTGATAGCTCAAGCGGAATTAAACGCCTCCGATTCGTGAATTGCACTAGCTTAACAGACGAGGGATTCAGCGAAGTGGCTTCGAAACTTCCCTTGCTGGAAGACCTTGACGTTTCGAAATGTGATAACATCTCATCTAAATCTCTACAGGTGGTTACGTGCTCATTCCCTCTTTTGAAATCGTGCAAATTGAATTCACTCAAACTCAATATATCAAGTGAAAGCAGGTGGCTTTGTAAGGTGGATTATTGTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

196

Amino Acids

22.05

Weight (kDa)

5.76

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 65 1.8e-09 F-box-like
F-box PF00646 19 - 62 4.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 2 cut(s) 247, 345
AclWI GGATC 2 cut(s) 50, 109
AcsI RAATTY 1 cut(s) 523
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 54, 261
AgsI TTSAA 2 cut(s) 508, 523
AjnI CCWGG 2 cut(s) 28, 117
AluBI AGCT 5 cut(s) 64, 267, 316, 339, 381
AluI AGCT 5 cut(s) 64, 267, 316, 339, 381
Alw21I GWGCWC 3 cut(s) 269, 300, 494
AlwI GGATC 2 cut(s) 50, 109
Aor51HI AGCGCT 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 523
AspLEI GCGC 3 cut(s) 128, 153, 183
AspS9I GGNCC 1 cut(s) 166
AsuII TTCGAA 2 cut(s) 413, 446
AvaII GGWCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 222, 438
Bbv12I GWGCWC 3 cut(s) 269, 300, 494
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 197
BceAI ACGGC 2 cut(s) 113, 239
BciT130I CCWGG 2 cut(s) 30, 119
BciVI GTATCC 1 cut(s) 19
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 546
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 2 cut(s) 247, 317
BlsI GCNGC 2 cut(s) 248, 318
Bme1390I CCNGG 2 cut(s) 30, 119
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 3 cut(s) 22, 168, 307
BmrFI CCNGG 2 cut(s) 30, 119
BpiI GAAGAC 2 cut(s) 222, 438
BpmI CTGGAG 1 cut(s) 140
Bpu14I TTCGAA 2 cut(s) 413, 446
BpuEI CTTGAG 2 cut(s) 325, 341
BsaAI YACGTR 1 cut(s) 489
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 227, 256, 257, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 261
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 30, 119
BseDI CCNNGG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 54, 261
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 164, 251
BseXI GCAGC 1 cut(s) 303
BseYI CCCAGC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 3 cut(s) 269, 300, 494
BslI CCNNNNNNNGG 2 cut(s) 54, 261
Bsp119I TTCGAA 2 cut(s) 413, 446
Bsp1286I GDGCHC 3 cut(s) 269, 300, 494
Bsp143I GATC 3 cut(s) 42, 114, 208
BspACI CCGC 2 cut(s) 247, 345
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 22, 168, 307
BspMI ACCTGC 1 cut(s) 546
BspPI GGATC 2 cut(s) 50, 109
BspT104I TTCGAA 2 cut(s) 413, 446
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 42, 114, 208
Bst2UI CCWGG 2 cut(s) 30, 119
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 489
BstBI TTCGAA 2 cut(s) 413, 446
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 128, 153, 183
BstKTI GATC 3 cut(s) 45, 117, 211
BstMBI GATC 3 cut(s) 42, 114, 208
BstMWI GCNNNNNNNGC 2 cut(s) 159, 204
BstNI CCWGG 2 cut(s) 30, 119
BstSCI CCNGG 2 cut(s) 28, 117
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 2 cut(s) 222, 438
BstX2I RGATCY 2 cut(s) 42, 114
BstYI RGATCY 2 cut(s) 42, 114
BsuI GTATCC 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 52, 330
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 3 cut(s) 128, 153, 183
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 4 cut(s) 17, 142, 193, 584
CviJI RGCY 8 cut(s) 64, 100, 267, 316, 339, 381, 410, 562
CviKI_1 RGCY 8 cut(s) 64, 100, 267, 316, 339, 381, 410, 562
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 44, 116, 210
DpnII GATC 3 cut(s) 42, 114, 208
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 28, 117
EcoT22I ATGCAT 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 269
FaeI CATG 4 cut(s) 20, 145, 196, 587
FaiI YATR 8 cut(s) 18, 139, 143, 194, 221, 327, 542, 585
FatI CATG 4 cut(s) 16, 141, 192, 583
Fnu4HI GCNGC 2 cut(s) 247, 317
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 247, 317
FspBI CTAG 1 cut(s) 378
GlaI GCGC 3 cut(s) 127, 152, 182
GluI GCNGC 2 cut(s) 247, 317
GsaI CCCAGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 129
HhaI GCGC 3 cut(s) 128, 153, 183
Hin1II CATG 4 cut(s) 20, 145, 196, 587
Hin6I GCGC 3 cut(s) 126, 151, 181
HinP1I GCGC 3 cut(s) 126, 151, 181
HinfI GANTC 2 cut(s) 363, 396
Hpy188I TCNGA 3 cut(s) 132, 264, 362
Hpy188III TCNNGA 4 cut(s) 48, 68, 212, 367
Hpy99I CGWCG 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 441, 488
HpyCH4V TGCA 4 cut(s) 141, 162, 375, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 204
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 441, 488
Hsp92II CATG 4 cut(s) 20, 145, 196, 587
HspAI GCGC 3 cut(s) 126, 151, 181
Kzo9I GATC 3 cut(s) 42, 114, 208
LmnI GCTCC 3 cut(s) 61, 104, 264
Lsp1109I GCAGC 1 cut(s) 303
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 441, 488
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 44, 116, 210
MboI GATC 3 cut(s) 42, 114, 208
MboII GAAGA 2 cut(s) 227, 443
MflI RGATCY 2 cut(s) 42, 114
MhlI GDGCHC 3 cut(s) 269, 300, 494
MluCI AATT 4 cut(s) 348, 370, 518, 523
MnlI CCTC 9 cut(s) 22, 33, 91, 180, 185, 229, 368, 385, 510
Mph1103I ATGCAT 1 cut(s) 143
MseI TTAA 4 cut(s) 258, 288, 351, 383
MspR9I CCNGG 2 cut(s) 30, 119
MvaI CCWGG 2 cut(s) 30, 119
MwoI GCNNNNNNNGC 2 cut(s) 159, 204
NdeII GATC 3 cut(s) 42, 114, 208
NlaIII CATG 4 cut(s) 20, 145, 196, 587
NlaIV GGNNCC 3 cut(s) 22, 168, 307
NsiI ATGCAT 1 cut(s) 143
NspV TTCGAA 2 cut(s) 413, 446
PaqCI CACCTGC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 363, 396
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 2 cut(s) 248, 318
Ppu21I YACGTR 1 cut(s) 489
PpuMI RGGWCCY 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 28, 117
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 2 cut(s) 28, 117
PspN4I GGNNCC 3 cut(s) 22, 168, 307
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
PsuI RGATCY 2 cut(s) 42, 114
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 4 cut(s) 258, 288, 351, 383
SatI GCNGC 2 cut(s) 247, 317
Sau3AI GATC 3 cut(s) 42, 114, 208
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 30, 119
SduI GDGCHC 3 cut(s) 269, 300, 494
SfcI CTRYAG 1 cut(s) 476
SfuI TTCGAA 2 cut(s) 413, 446
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 2 cut(s) 320, 340
SmoI CTYRAG 2 cut(s) 320, 340
Sse9I AATT 4 cut(s) 348, 370, 518, 523
SsiI CCGC 2 cut(s) 247, 345
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 28, 117
TaiI ACGT 2 cut(s) 444, 491
TaqI TCGA 5 cut(s) 86, 213, 282, 413, 446
TasI AATT 4 cut(s) 348, 370, 518, 523
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 2 cut(s) 363, 396
Tru1I TTAA 4 cut(s) 258, 288, 351, 383
Tru9I TTAA 4 cut(s) 258, 288, 351, 383
TscAI CASTG 2 cut(s) 59, 337
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 59, 337
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 523
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.