RLG00000010446

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000331
Physical Location & Seq
Forward (+)
1685086 .. 1686864
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010446

Sequence Viewer

Length: 564 bp
ATGTCACGGCTGGGCGCCGTTGACATGTTGGAGAGCACTCAGAAGGTTTGCATGAATTGGCGCAAAATCTATAAGAACAACACTCGGATTTGGCGCACCATCGACATGAGAAATGATGGTGATTTTCCATACGACCTGGAGATTATGTGCTGCCACGCCGTTGATCGCAGCCGCGGTCAGCTCGTCGATATTAACATCGAGCACTTCGGCACCGATGAGCTGGTTCACTATATCACTGATAGAGTACAATGGAGACGCATTGCTATAGCAGAAACAATGAGAGGTTTACACCACCTCCAGCTTTTTGGGAACAAGTTGAGAGATGATGGCTTCAGAAATATTCTTGATTCTTGTTCCCTTGATCTACGACACTGTTTTACTCTTGATCTGGATGGAGACTTGATAGAATTTGTGGTGAACGAATTGAAAAACTGTGGCTTCCCCATGATTCCTCCGAAGCTTCCTGATGTAGTTACAGCATCAATATTAATTGTCACGGCTCGGAGGGATGGATATCCTGGAGACCGCTCAAAAAGTGTGCTCAAAATGGCACAAAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

188

Amino Acids

21.65

Weight (kDa)

6.58

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 209
AccBSI CCGCTC 1 cut(s) 528
AccII CGCG 1 cut(s) 174
AciI CCGC 3 cut(s) 172, 174, 526
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 2 cut(s) 135, 517
AluBI AGCT 4 cut(s) 181, 220, 301, 460
AluI AGCT 4 cut(s) 181, 220, 301, 460
Alw21I GWGCWC 3 cut(s) 38, 204, 543
Alw26I GTCTC 3 cut(s) 247, 390, 516
ApeKI GCWGC 2 cut(s) 150, 168
ApoI RAATTY 1 cut(s) 407
AseI ATTAAT 1 cut(s) 488
AspLEI GCGC 3 cut(s) 17, 63, 96
AsuHPI GGTGA 2 cut(s) 131, 427
BanI GGYRCC 2 cut(s) 14, 209
Bbv12I GWGCWC 3 cut(s) 38, 204, 543
BbvI GCAGC 2 cut(s) 137, 180
BccI CCATC 5 cut(s) 107, 110, 320, 386, 503
BceAI ACGGC 4 cut(s) 2, 23, 143, 513
BciT130I CCWGG 2 cut(s) 137, 519
BcoDI GTCTC 3 cut(s) 247, 390, 516
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 3 cut(s) 151, 169, 172
BlsI GCNGC 3 cut(s) 152, 170, 173
Bme1390I CCNGG 2 cut(s) 137, 519
BmiI GGNNCC 2 cut(s) 16, 211
BmrFI CCNGG 2 cut(s) 137, 519
BmsI GCATC 1 cut(s) 488
BpmI CTGGAG 3 cut(s) 158, 281, 540
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 279, 309
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 2 cut(s) 137, 519
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 397, 514
BseJI GATNNNNATC 1 cut(s) 513
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 137, 180
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 174
BshNI GGYRCC 2 cut(s) 14, 209
BsiHKAI GWGCWC 3 cut(s) 38, 204, 543
BsmAI GTCTC 3 cut(s) 247, 390, 516
BsmBI CGTCTC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 38, 204, 543
Bsp143I GATC 3 cut(s) 163, 361, 385
BspACI CCGC 3 cut(s) 172, 174, 526
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 16, 211
BspT107I GGYRCC 2 cut(s) 14, 209
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 163, 361, 385
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 137, 519
Bst4CI ACNGT 2 cut(s) 374, 434
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 397, 514
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 3 cut(s) 17, 63, 96
BstKTI GATC 3 cut(s) 166, 364, 388
BstMAI GTCTC 3 cut(s) 247, 390, 516
BstMBI GATC 3 cut(s) 163, 361, 385
BstNI CCWGG 2 cut(s) 137, 519
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 135, 517
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 137, 180
BstXI CCANNNNNNTGG 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 397, 514
BtsIMutI CAGTG 2 cut(s) 234, 370
CfoI GCGC 3 cut(s) 17, 63, 96
Cfr42I CCGCGG 1 cut(s) 175
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 245
CviAII CATG 4 cut(s) 25, 52, 106, 445
CviJI RGCY 9 cut(s) 10, 171, 181, 220, 301, 330, 438, 460, 500
CviKI_1 RGCY 9 cut(s) 10, 171, 181, 220, 301, 330, 438, 460, 500
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 39
DinI GGCGCC 1 cut(s) 16
DpnI GATC 3 cut(s) 165, 363, 387
DpnII GATC 3 cut(s) 163, 361, 385
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 135, 517
EcoRV GATATC 1 cut(s) 515
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 4 cut(s) 28, 55, 109, 448
FaiI YATR 9 cut(s) 26, 53, 72, 107, 130, 146, 231, 266, 446
FatI CATG 4 cut(s) 24, 51, 105, 444
Fnu4HI GCNGC 3 cut(s) 151, 169, 172
FokI GGATG 2 cut(s) 404, 521
Fsp4HI GCNGC 3 cut(s) 151, 169, 172
GlaI GCGC 3 cut(s) 16, 62, 95
GluI GCNGC 3 cut(s) 151, 169, 172
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 3 cut(s) 158, 281, 540
HaeII RGCGCY 1 cut(s) 18
HgaI GACGC 1 cut(s) 264
HhaI GCGC 3 cut(s) 17, 63, 96
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 28, 55, 109, 448
Hin6I GCGC 3 cut(s) 15, 61, 94
HinP1I GCGC 3 cut(s) 15, 61, 94
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 347, 448
HphI GGTGA 2 cut(s) 131, 427
Hpy166II GTNNAC 4 cut(s) 22, 226, 287, 418
Hpy188I TCNGA 5 cut(s) 42, 87, 335, 456, 504
Hpy188III TCNNGA 4 cut(s) 344, 383, 389, 464
Hpy8I GTNNAC 4 cut(s) 22, 226, 287, 418
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 374, 434
HpyCH4V TGCA 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 28, 55, 109, 448
HspAI GCGC 3 cut(s) 15, 61, 94
KasI GGCGCC 1 cut(s) 14
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 3 cut(s) 163, 361, 385
LpnPI CCDG 8 cut(s) 122, 149, 206, 311, 374, 477, 504, 531
Lsp1109I GCAGC 2 cut(s) 137, 180
LweI GCATC 1 cut(s) 488
MaeIII GTNAC 3 cut(s) 3, 472, 493
MalI GATC 3 cut(s) 165, 363, 387
MbiI CCGCTC 1 cut(s) 528
MboI GATC 3 cut(s) 163, 361, 385
MhlI GDGCHC 3 cut(s) 38, 204, 543
MluCI AATT 4 cut(s) 55, 407, 422, 489
Mly113I GGCGCC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 4 cut(s) 275, 305, 462, 498
MseI TTAA 2 cut(s) 192, 488
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 137, 519
MvaI CCWGG 2 cut(s) 137, 519
MvnI CGCG 1 cut(s) 174
NarI GGCGCC 1 cut(s) 15
NdeII GATC 3 cut(s) 163, 361, 385
NlaIII CATG 4 cut(s) 28, 55, 109, 448
NlaIV GGNNCC 2 cut(s) 16, 211
NmuCI GTSAC 2 cut(s) 3, 493
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PfeI GAWTC 2 cut(s) 347, 448
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 3 cut(s) 152, 170, 173
PluTI GGCGCC 1 cut(s) 18
PscI ACATGT 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 135, 517
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 135, 517
PspN4I GGNNCC 2 cut(s) 16, 211
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 104
SacII CCGCGG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 192, 488
SatI GCNGC 3 cut(s) 151, 169, 172
Sau3AI GATC 3 cut(s) 163, 361, 385
ScrFI CCNGG 2 cut(s) 137, 519
SduI GDGCHC 3 cut(s) 38, 204, 543
SetI ASST 8 cut(s) 48, 138, 183, 222, 286, 297, 303, 462
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 1 cut(s) 264
SfoI GGCGCC 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 4 cut(s) 55, 407, 422, 489
SsiI CCGC 3 cut(s) 172, 174, 526
SspDI GGCGCC 1 cut(s) 14
SspI AATATT 2 cut(s) 340, 486
StyD4I CCNGG 2 cut(s) 135, 517
TaaI ACNGT 2 cut(s) 374, 434
TaqI TCGA 3 cut(s) 102, 186, 198
TasI AATT 4 cut(s) 55, 407, 422, 489
TatI WGTACW 1 cut(s) 244
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 347, 448
Tru1I TTAA 2 cut(s) 192, 488
Tru9I TTAA 2 cut(s) 192, 488
TscAI CASTG 2 cut(s) 241, 377
TseFI GTSAC 2 cut(s) 3, 493
TseI GCWGC 2 cut(s) 150, 168
Tsp45I GTSAC 2 cut(s) 3, 493
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 2 cut(s) 241, 377
VspI ATTAAT 1 cut(s) 488
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.