Rh2DG306300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000331
Physical Location & Seq
Reverse (-)
37278379 .. 37278702
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG306300.1

Sequence Viewer

Length: 324 bp
ATGGCCAAATCCTCCCGAAGATGCAAGAGAATCTACCAAAACTGGACGGAGCTCCCTGATAAAGCTATGGCGTCGATGCTCTCACGGCTTGGAGCGATCGAGATCCTGGAGAGCGCTCAGAAAGTGTGCATGAAATGGCGCAAAATCTGCAAGGACCCTTTCATGTGGAGCAAGATTGACATGCGAAACGATGGTGAGATTAACTATGACTTGGAGGAGATGTGCCGCTACGCCGTTGATCGGAGCTCCAGTAATCATGTTGATATTAACGTCGAGTACTTTGGCATCGATGAGCTGCTCGAATACATCACTGGAAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

107

Amino Acids

12.7

Weight (kDa)

6.58

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 15 - 61 1.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 2 cut(s) 278, 320
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 240
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 52, 65, 246, 295
AluI AGCT 4 cut(s) 52, 65, 246, 295
Alw21I GWGCWC 2 cut(s) 54, 248
AlwI GGATC 1 cut(s) 97
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 295
AspLEI GCGC 2 cut(s) 116, 141
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 54, 248
Bbv12I GWGCWC 2 cut(s) 54, 248
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 101, 218
BciT130I CCWGG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 2 cut(s) 226, 296
BlsI GCNGC 2 cut(s) 227, 297
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 11, 66, 294
BpmI CTGGAG 2 cut(s) 128, 232
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 71
BsaXI ACNNNNNCTCC 4 cut(s) 206, 235, 236, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 47, 249, 316
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 107
BseCI ATCGAT 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 47, 249, 316
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 54, 248
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 54, 248
Bsp143I GATC 3 cut(s) 96, 102, 238
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 97
BsrI ACTGG 3 cut(s) 47, 249, 316
BssMI GATC 3 cut(s) 96, 102, 238
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 116, 141
BstKTI GATC 3 cut(s) 99, 105, 241
BstMBI GATC 3 cut(s) 96, 102, 238
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 85, 147
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 309
CfoI GCGC 2 cut(s) 116, 141
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 277, 319
CviAII CATG 4 cut(s) 130, 163, 181, 257
CviJI RGCY 6 cut(s) 5, 52, 65, 88, 246, 295
CviKI_1 RGCY 6 cut(s) 5, 52, 65, 88, 246, 295
CviQI GTAC 2 cut(s) 277, 319
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 98, 104, 240
DpnII GATC 3 cut(s) 96, 102, 238
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 52, 246
Eco24I GRGCYC 2 cut(s) 54, 248
Eco47I GGWCC 1 cut(s) 154
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 52, 246
EcoICRI GAGCTC 2 cut(s) 52, 246
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 2 cut(s) 54, 248
FaeI CATG 4 cut(s) 133, 166, 184, 260
FaiI YATR 6 cut(s) 68, 131, 164, 182, 207, 258
FatI CATG 4 cut(s) 129, 162, 180, 256
Fnu4HI GCNGC 2 cut(s) 226, 296
FriOI GRGCYC 2 cut(s) 54, 248
Fsp4HI GCNGC 2 cut(s) 226, 296
GlaI GCGC 2 cut(s) 115, 140
GluI GCNGC 2 cut(s) 226, 296
GsuI CTGGAG 2 cut(s) 128, 232
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 116, 141
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 4 cut(s) 133, 166, 184, 260
Hin6I GCGC 2 cut(s) 114, 139
HinP1I GCGC 2 cut(s) 114, 139
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 120, 243
Hpy188III TCNNGA 2 cut(s) 15, 100
Hpy99I CGWCG 2 cut(s) 76, 275
HpyAV CCTTC 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 24, 129, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 147
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 133, 166, 184, 260
HspAI GCGC 2 cut(s) 114, 139
Kzo9I GATC 3 cut(s) 96, 102, 238
LmnI GCTCC 6 cut(s) 49, 57, 92, 168, 243, 251
LpnPI CCDG 6 cut(s) 28, 69, 92, 119, 262, 297
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 3 cut(s) 11, 66, 294
MaeII ACGT 1 cut(s) 270
MalI GATC 3 cut(s) 98, 104, 240
MboI GATC 3 cut(s) 96, 102, 238
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 54, 248
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 22, 208
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 201, 267
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 85, 147
NdeII GATC 3 cut(s) 96, 102, 238
NlaIII CATG 4 cut(s) 133, 166, 184, 260
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 184
PfeI GAWTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 2 cut(s) 227, 297
Ple19I CGATCG 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 2 cut(s) 54, 248
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 102
PvuI CGATCG 1 cut(s) 99
RsaI GTAC 2 cut(s) 278, 320
RsaNI GTAC 2 cut(s) 277, 319
SacI GAGCTC 2 cut(s) 54, 248
SaqAI TTAA 2 cut(s) 201, 267
SatI GCNGC 2 cut(s) 226, 296
Sau3AI GATC 3 cut(s) 96, 102, 238
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 2 cut(s) 54, 248
SetI ASST 6 cut(s) 54, 67, 248, 273, 297, 320
SfaNI GCATC 3 cut(s) 11, 66, 294
SinI GGWCC 1 cut(s) 154
SsiI CCGC 1 cut(s) 226
SstI GAGCTC 2 cut(s) 54, 248
StyD4I CCNGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 273
TaqI TCGA 5 cut(s) 74, 99, 273, 288, 300
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 201, 267
Tru9I TTAA 2 cut(s) 201, 267
TscAI CASTG 1 cut(s) 316
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 146, 151
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 154
XceI RCATGY 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.