Rh5AG119200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000331
Physical Location & Seq
Forward (+)
11085728 .. 11088595
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG119200.1

Sequence Viewer

Length: 597 bp
ATGGGCGGCAAGAAAAAGCACAAGCAAACCTTCCGGCCACCACCGCCACCCAAGCGCGTCTGGGTAGTCAAACGCCGAAACTGGCTGGAAATCCCGGACGACGTCACGGCGGCGATACTGACACGTGTCGGCGCGATCGGGATGCTGGAGAGCGCTCAGAAGGTGTGCACGAAATGGCGCAGAATCTGCAAGGACCCTCTCATGTGGCGCGAAATCGATATGCGAAACGACGGCACGCAGCACGAGATGGAGGACCTGGAGAATATGTGCCTCCACGCCGTTGGTCGGAGCGCCGGGAAATTGGTCGGCATCACCGTCGAGCACTTCGGCACCGATGATCTGCTTAAGTACATCACTGACAGAATTGATAATGATTATGACGAATATGGCTATGGTAATTATGGTGGATGGTGCTCCGATGATAGTGATTGGTATGATGATTTCACTAAACCTCCATTAGAAGAGCTTCTTGGACTTGATGAGGAAGATCTTGAATTTTTCGGACTTGCGAAGGGACGTAGAAGGGATTACCTTGAAGATTTTTATGATTTTGAAGATTATGGAGATTATGAAAGTGATGATGAGATGTTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

198

Amino Acids

23.28

Weight (kDa)

4.63

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 28 - 74 2.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 3 cut(s) 57, 134, 210
AciI CCGC 3 cut(s) 6, 44, 110
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 494
AcvI CACGTG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 350
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 285
AflII CTTAAG 1 cut(s) 344
AflIII ACRYGT 2 cut(s) 122, 124
AgsI TTSAA 3 cut(s) 494, 536, 554
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
Alw21I GWGCWC 3 cut(s) 170, 324, 416
Alw44I GTGCAC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 186
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 6 cut(s) 57, 134, 155, 180, 210, 293
AspS9I GGNCC 2 cut(s) 193, 253
AsuC2I CCSGG 2 cut(s) 95, 295
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 2 cut(s) 193, 253
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 329
BauI CACGAG 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 125
Bbv12I GWGCWC 3 cut(s) 170, 324, 416
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 241, 402
BceAI ACGGC 3 cut(s) 123, 247, 263
BcgI CGANNNNNNTGC 4 cut(s) 124, 158, 298, 332
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 2 cut(s) 95, 295
BfoI RGCGCY 2 cut(s) 156, 294
BfrI CTTAAG 1 cut(s) 344
BglII AGATCT 1 cut(s) 487
BisI GCNGC 3 cut(s) 7, 111, 239
BlsI GCNGC 3 cut(s) 8, 112, 240
Bme1390I CCNGG 3 cut(s) 95, 257, 295
Bme18I GGWCC 2 cut(s) 193, 253
BmgT120I GGNCC 2 cut(s) 193, 253
BmiI GGNNCC 2 cut(s) 195, 331
BmrFI CCNGG 3 cut(s) 95, 257, 295
BmsI GCATC 2 cut(s) 132, 318
BoxI GACNNNNGTC 1 cut(s) 125
BpmI CTGGAG 2 cut(s) 167, 278
BpuMI CCSGG 2 cut(s) 95, 295
Bsa29I ATCGAT 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 436, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 216
BseGI GGATG 2 cut(s) 147, 413
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 3 cut(s) 57, 134, 210
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 3 cut(s) 170, 324, 416
BsiSI CCGG 3 cut(s) 34, 95, 294
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 3 cut(s) 170, 324, 416
Bsp143I GATC 3 cut(s) 135, 337, 487
BspACI CCGC 3 cut(s) 6, 44, 110
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 3 cut(s) 57, 134, 210
BspLI GGNNCC 2 cut(s) 195, 331
BspQI GCTCTTC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 329
BspTI CTTAAG 1 cut(s) 344
BsrI ACTGG 1 cut(s) 86
BssMI GATC 3 cut(s) 135, 337, 487
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 147, 413
BstFNI CGCG 3 cut(s) 57, 134, 210
BstH2I RGCGCY 2 cut(s) 156, 294
BstHHI GCGC 6 cut(s) 57, 134, 155, 180, 210, 293
BstKTI GATC 3 cut(s) 138, 340, 490
BstMBI GATC 3 cut(s) 135, 337, 487
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 43, 52, 186
BstNI CCWGG 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 93, 255, 293
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 3 cut(s) 57, 134, 210
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 37
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 2 cut(s) 147, 413
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 186
CfoI GCGC 6 cut(s) 57, 134, 155, 180, 210, 293
Cfr13I GGNCC 2 cut(s) 193, 253
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 37, 85, 390, 466
CviKI_1 RGCY 4 cut(s) 37, 85, 390, 466
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 156
DpnI GATC 3 cut(s) 137, 339, 489
DpnII GATC 3 cut(s) 135, 337, 487
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 193, 253
Eco47III AGCGCT 1 cut(s) 154
Eco72I CACGTG 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 193, 253
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 205
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 453, 485
FaqI GGGAC 1 cut(s) 528
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 7, 111, 239
FokI GGATG 2 cut(s) 154, 420
Fsp4HI GCNGC 3 cut(s) 7, 111, 239
GlaI GCGC 6 cut(s) 56, 133, 154, 179, 209, 292
GluI GCNGC 3 cut(s) 7, 111, 239
GsuI CTGGAG 2 cut(s) 167, 278
HaeII RGCGCY 2 cut(s) 156, 294
HaeIII GGCC 1 cut(s) 37
HapII CCGG 3 cut(s) 34, 95, 294
HgaI GACGC 1 cut(s) 46
HhaI GCGC 6 cut(s) 57, 134, 155, 180, 210, 293
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 6 cut(s) 55, 132, 153, 178, 208, 291
HinP1I GCGC 6 cut(s) 55, 132, 153, 178, 208, 291
HinfI GANTC 1 cut(s) 183
HpaII CCGG 3 cut(s) 34, 95, 294
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 4 cut(s) 159, 288, 418, 503
Hpy188III TCNNGA 2 cut(s) 139, 491
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 3 cut(s) 104, 233, 320
HpyAV CCTTC 4 cut(s) 40, 154, 505, 516
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 3 cut(s) 102, 124, 517
HpyCH4V TGCA 2 cut(s) 168, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 52, 186
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 3 cut(s) 102, 124, 517
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 6 cut(s) 55, 132, 153, 178, 208, 291
Kzo9I GATC 3 cut(s) 135, 337, 487
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 288, 419
LpnPI CCDG 9 cut(s) 46, 47, 67, 71, 108, 131, 242, 269, 307
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 132, 318
MaeII ACGT 3 cut(s) 102, 124, 517
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 137, 339, 489
MboI GATC 3 cut(s) 135, 337, 487
MboII GAAGA 4 cut(s) 473, 497, 548, 566
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 3 cut(s) 170, 324, 416
MluCI AATT 4 cut(s) 299, 363, 397, 494
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 5 cut(s) 207, 244, 281, 462, 475
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 3 cut(s) 34, 95, 294
MspR9I CCNGG 3 cut(s) 95, 257, 295
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 3 cut(s) 57, 134, 210
MwoI GCNNNNNNNGC 3 cut(s) 43, 52, 186
NciI CCSGG 2 cut(s) 95, 295
NdeII GATC 3 cut(s) 135, 337, 487
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 195, 331
NmuCI GTSAC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 183
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 8, 112, 240
Ple19I CGATCG 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 125
PpuMI RGGWCCY 2 cut(s) 193, 253
PshAI GACNNNNGTC 1 cut(s) 125
Psp5II RGGWCCY 2 cut(s) 193, 253
Psp6I CCWGG 1 cut(s) 255
PspCI CACGTG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 195, 331
PspPI GGNCC 2 cut(s) 193, 253
PspPPI RGGWCCY 2 cut(s) 193, 253
PstNI CAGNNNCTG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 101
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 3 cut(s) 7, 111, 239
Sau3AI GATC 3 cut(s) 135, 337, 487
Sau96I GGNCC 2 cut(s) 193, 253
ScrFI CCNGG 3 cut(s) 95, 257, 295
SduI GDGCHC 3 cut(s) 170, 324, 416
SetI ASST 9 cut(s) 32, 105, 127, 165, 258, 454, 468, 520, 534
SfaNI GCATC 2 cut(s) 132, 318
SinI GGWCC 2 cut(s) 193, 253
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 4 cut(s) 299, 363, 397, 494
SsiI CCGC 3 cut(s) 6, 44, 110
StyD4I CCNGG 3 cut(s) 93, 255, 293
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 3 cut(s) 105, 127, 520
TaqI TCGA 2 cut(s) 216, 318
TasI AATT 4 cut(s) 299, 363, 397, 494
TatI WGTACW 1 cut(s) 348
TauI GCSGC 2 cut(s) 9, 113
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 193, 253
XapI RAATTY 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 465
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.