FvH4_2g13770

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000331
Physical Location & Seq
Forward (+)
12006019 .. 12007074
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13770.t1

Sequence Viewer

Length: 636 bp
ATGGCTAAACCCTTAAACAAAACATTGCTGCAAGATGGAAATGAAAACCCCCGGAGCTGGATCAACTTTCCAGACAACGTCATCGCTTCAATATTGTCACGATTGGAAGCGATCGAGATTCTGGTGACCGCTCTGAACGTCTGTACGACATGGCAAATAATCTACAAGTACCCTACAAACTGGCGCACCATTGACATACTTGATTTTCCTCCCTACAAATGCATACATGACTATCTTGAAGTTATTGGCCGTTGTTGCCCTCGTTTGAAATCACTGAAATTGAACAAGTTCAATAACTATCAACACTTCATGGGTGAATCCAATGGTGATGCACTTGCTATAGGAGGAACAATGCATATCACTAGCAAGGGGTTGCGCGCCATTTTTGATGGATGTTCACTTCTTGAGTCACTTGATCTGCTTAATTGTGGCAATATTAATCTCAATCCTCTGTTTCGACATTGTTTTGGTCTGAAATTGGAAGAAGAATTGAGAACAAGATGCATTGACCGTATTAAAAACTTGTGGCTTCCTCGTGATTCTACACCACAGACCAACTTGTTAACAAAAAGTGGGATGTTGAATCTATGTGCTGGGAAATTTGATTTACGGAAATTTGGCGTCTTGGAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

8.56

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 599, 614
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 2 cut(s) 145, 170
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 6 cut(s) 90, 239, 268, 283, 292, 583
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 2 cut(s) 599, 614
AseI ATTAAT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 3 cut(s) 186, 378, 380
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 136, 326, 338
BauI CACGAG 1 cut(s) 534
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 29, 383
BceAI ACGGC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 2 cut(s) 363, 634
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 319, 491
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 398, 582
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 185
BsePI GCGCGC 1 cut(s) 376
BseXI GCAGC 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 60, 111, 415
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 50
BssHII GCGCGC 1 cut(s) 376
BssMI GATC 3 cut(s) 60, 111, 415
BssNI GRCGYC 1 cut(s) 621
BssSI CACGAG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 398, 582
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 3 cut(s) 186, 378, 380
BstKTI GATC 3 cut(s) 63, 114, 418
BstMBI GATC 3 cut(s) 60, 111, 415
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 398, 582
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 378
CfoI GCGC 3 cut(s) 186, 378, 380
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 144, 169
CviAII CATG 3 cut(s) 150, 227, 310
CviJI RGCY 4 cut(s) 5, 57, 249, 529
CviKI_1 RGCY 4 cut(s) 5, 57, 249, 529
CviQI GTAC 2 cut(s) 144, 169
DpnI GATC 3 cut(s) 62, 113, 417
DpnII GATC 3 cut(s) 60, 111, 415
EaeI YGGCCR 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoT22I ATGCAT 3 cut(s) 224, 357, 506
FaeI CATG 3 cut(s) 153, 230, 313
FaiI YATR 8 cut(s) 151, 197, 224, 228, 311, 341, 357, 589
FatI CATG 3 cut(s) 149, 226, 309
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 405, 589
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 363, 634
GlaI GCGC 3 cut(s) 185, 377, 379
GluI GCNGC 1 cut(s) 29
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 52
HgaI GACGC 1 cut(s) 610
HhaI GCGC 3 cut(s) 186, 378, 380
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 3 cut(s) 153, 230, 313
Hin6I GCGC 3 cut(s) 184, 376, 378
HinP1I GCGC 3 cut(s) 184, 376, 378
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 5 cut(s) 118, 317, 407, 539, 583
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 1 cut(s) 52
HphI GGTGA 3 cut(s) 136, 326, 338
Hpy166II GTNNAC 2 cut(s) 398, 564
Hpy188I TCNGA 2 cut(s) 135, 474
Hpy188III TCNNGA 6 cut(s) 71, 99, 115, 236, 404, 536
Hpy8I GTNNAC 2 cut(s) 398, 564
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 78, 138
HpyCH4V TGCA 5 cut(s) 31, 222, 332, 355, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 78, 138
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 3 cut(s) 153, 230, 313
HspAI GCGC 3 cut(s) 184, 376, 378
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 3 cut(s) 60, 111, 415
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 43, 65, 84, 107, 166, 579
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 2 cut(s) 319, 491
MaeI CTAG 2 cut(s) 363, 634
MaeII ACGT 2 cut(s) 78, 138
MaeIII GTNAC 3 cut(s) 96, 124, 408
MalI GATC 3 cut(s) 62, 113, 417
MbiI CCGCTC 1 cut(s) 131
MboI GATC 3 cut(s) 60, 111, 415
MboII GAAGA 2 cut(s) 494, 497
MluCI AATT 6 cut(s) 278, 424, 476, 488, 599, 614
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 5 cut(s) 219, 270, 338, 459, 543
Mph1103I ATGCAT 3 cut(s) 224, 357, 506
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 5 cut(s) 14, 423, 438, 516, 563
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 52
NdeII GATC 3 cut(s) 60, 111, 415
NlaIII CATG 3 cut(s) 153, 230, 313
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 3 cut(s) 96, 124, 408
NsiI ATGCAT 3 cut(s) 224, 357, 506
PauI GCGCGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 4 cut(s) 118, 317, 539, 583
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 30
Ple19I CGATCG 1 cut(s) 114
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 438
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 1 cut(s) 630
PsyI GACNNNGTC 1 cut(s) 77
PteI GCGCGC 1 cut(s) 376
PvuI CGATCG 1 cut(s) 114
RsaI GTAC 2 cut(s) 145, 170
RsaNI GTAC 2 cut(s) 144, 169
SaqAI TTAA 5 cut(s) 14, 423, 438, 516, 563
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 60, 111, 415
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 52
SetI ASST 3 cut(s) 59, 81, 141
SfaNI GCATC 2 cut(s) 319, 491
SfcI CTRYAG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 6 cut(s) 278, 424, 476, 488, 599, 614
SsiI CCGC 1 cut(s) 129
SspI AATATT 2 cut(s) 93, 436
SspMI CTAG 2 cut(s) 363, 634
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 81, 141
TaqI TCGA 2 cut(s) 114, 457
TasI AATT 6 cut(s) 278, 424, 476, 488, 599, 614
TfiI GAWTC 4 cut(s) 118, 317, 539, 583
Tru1I TTAA 5 cut(s) 14, 423, 438, 516, 563
Tru9I TTAA 5 cut(s) 14, 423, 438, 516, 563
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 3 cut(s) 96, 124, 408
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 3 cut(s) 96, 124, 408
TspDTI ATGAA 2 cut(s) 57, 298
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 2 cut(s) 599, 614
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 363, 634
Zsp2I ATGCAT 3 cut(s) 224, 357, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.