FvH4_3g09552

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000331
Physical Location & Seq
Forward (+)
5569152 .. 5570196
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09552.t1

Sequence Viewer

Length: 870 bp
ATGGCCGAACCCTCAAACAAAACCGAGCGGCAAGACGGAAATCAAAACCCCCGGAGCTGGATCGACCTCCCAGAAGACGTCACCGCTTCGATACTATTACGGCTGGGAACGATCGAGATCCTGGTGACCGCTCTGAACGTGTGTACGACATGGCGCAGAATCTGCAAGGAATCTAGAATGTGGCACACCATCGACATCTGCGATGTTTCGGTTTATGGCAAGTTGCCCTCACGATACCCCATGGACAGGATGTGTAGGAAAGCCATTGATCTCACCTGTGGCAACCTCGTCAATATCAGTGTGCACAACTTTGGCTCCGATGATCTCCTCAAGTATATCACTGATAGGTACTGTAATTTTCTACAAGGAATCAAGCGGCTCTGTTTTGAGTTTTCTGACATAACAAATTATGGACTGATTGAAGCGGCTCCGAAGCTCCCGCAGTTGGAGTACCTTGAACTATCACAAGGCAACTACATATTCGATAATCCTCCCTTCAATCACATACGACATGCCTATCTTGAAGTGATTGGCCGTTGTTGCCCTCGTTTGAAATCACTGAAATTGAAGGAGTACAACACTGACTGGTTTTTTGATGGATGGGATGGCGATGCACTTGCTATTGCAGAAACAATGCATGGTCTACACCACCTCCATCTTTTGGGAGATAAGATCACTAGCAAAGGCTTGCGCGCCATTCTTGATGGCTGTCCGCTGCTTGTGTCACTTGATCTGCGTCATTGTTGGCATATTGATCTGGATCCGGAGCGCGAAGAATTGCAAAGATGCATTGACCAAATTGAAAACTTGCGGCTTCCTCATGATTCTACACATGACTATGAACGTCTTGCCGCGCAAAAAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

290

Amino Acids

33.48

Weight (kDa)

5.94

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 66 1.8e-07 F-box-like
F-box PF00646 20 - 62 3.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 661
AccBSI CCGCTC 2 cut(s) 28, 131
AccI GTMKAC 1 cut(s) 643
AccII CGCG 3 cut(s) 693, 771, 854
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 9 cut(s) 28, 84, 129, 376, 425, 440, 713, 811, 852
AclWI GGATC 4 cut(s) 68, 112, 755, 768
AcoI YGGCCR 2 cut(s) 3, 532
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 145, 350, 452, 575
AfiI CCNNNNNNNGG 4 cut(s) 57, 246, 445, 661
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 7 cut(s) 422, 458, 499, 524, 553, 568, 803
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 2 cut(s) 57, 436
AluI AGCT 2 cut(s) 57, 436
Alw21I GWGCWC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 4 cut(s) 68, 112, 755, 768
AlwNI CAGNNNCTG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 2 cut(s) 3, 532
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 715
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspLEI GCGC 5 cut(s) 156, 693, 695, 771, 856
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 73, 136, 265
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 702
BccI CCATC 6 cut(s) 197, 590, 594, 599, 663, 698
BceAI ACGGC 2 cut(s) 116, 519
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 2 cut(s) 174, 678
BisI GCNGC 6 cut(s) 29, 377, 426, 716, 812, 852
BlsI GCNGC 6 cut(s) 30, 378, 427, 717, 813, 853
Bme1390I CCNGG 2 cut(s) 52, 122
BmiI GGNNCC 3 cut(s) 316, 429, 762
BmrFI CCNGG 2 cut(s) 52, 122
BmsI GCATC 2 cut(s) 601, 776
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 52
BsaBI GATNNNNATC 2 cut(s) 116, 759
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 50, 240
BsaWI WCCGGW 1 cut(s) 763
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 636, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 246, 445, 661
Bse1I ACTGG 1 cut(s) 590
Bse8I GATNNNNATC 2 cut(s) 116, 759
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 50, 240
BseGI GGATG 3 cut(s) 255, 605, 610
BseJI GATNNNNATC 2 cut(s) 116, 759
BseLI CCNNNNNNNGG 4 cut(s) 57, 246, 445, 661
BseNI ACTGG 1 cut(s) 590
BsePI GCGCGC 1 cut(s) 691
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 702
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 693, 771, 854
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 5, 534
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 52, 764
BslI CCNNNNNNNGG 4 cut(s) 57, 246, 445, 661
BsnI GGCC 2 cut(s) 5, 534
Bsp1286I GDGCHC 1 cut(s) 306
Bsp13I TCCGGA 1 cut(s) 763
Bsp143I GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 9 cut(s) 28, 84, 129, 376, 425, 440, 713, 811, 852
BspANI GGCC 2 cut(s) 5, 534
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 3 cut(s) 693, 771, 854
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 3 cut(s) 316, 429, 762
BspPI GGATC 4 cut(s) 68, 112, 755, 768
BsrBI CCGCTC 2 cut(s) 28, 131
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 50, 240
BssHII GCGCGC 1 cut(s) 691
BssMI GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 689, 693
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 3 cut(s) 255, 605, 610
BstFNI CGCG 3 cut(s) 693, 771, 854
BstHHI GCGC 5 cut(s) 156, 693, 695, 771, 856
BstKTI GATC 9 cut(s) 63, 114, 120, 271, 325, 675, 733, 757, 763
BstMBI GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 162, 540
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 50, 120
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 3 cut(s) 693, 771, 854
BstV1I GCAGC 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 117, 760
BstYI RGATCY 2 cut(s) 117, 760
BsuRI GGCC 2 cut(s) 5, 534
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 2 cut(s) 216, 624
BtsCI GGATG 3 cut(s) 255, 605, 610
BtsIMutI CAGTG 4 cut(s) 304, 339, 557, 579
Cac8I GCNNGC 2 cut(s) 689, 693
CaiI CAGNNNCTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 820
CfoI GCGC 5 cut(s) 156, 693, 695, 771, 856
CseI GACGC 1 cut(s) 725
Csp6I GTAC 4 cut(s) 144, 349, 451, 574
CviAII CATG 6 cut(s) 150, 241, 512, 638, 821, 833
CviQI GTAC 4 cut(s) 144, 349, 451, 574
DpnI GATC 9 cut(s) 62, 113, 119, 270, 324, 674, 732, 756, 762
DpnII GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
EaeI YGGCCR 2 cut(s) 3, 532
Eco130I CCWWGG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 2 cut(s) 639, 791
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 6 cut(s) 153, 244, 515, 641, 824, 836
FatI CATG 6 cut(s) 149, 240, 511, 637, 820, 832
FauI CCCGC 1 cut(s) 447
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 6 cut(s) 29, 377, 426, 716, 812, 852
FokI GGATG 3 cut(s) 262, 612, 617
Fsp4HI GCNGC 6 cut(s) 29, 377, 426, 716, 812, 852
FspBI CTAG 2 cut(s) 174, 678
GlaI GCGC 5 cut(s) 155, 692, 694, 770, 855
GluI GCNGC 6 cut(s) 29, 377, 426, 716, 812, 852
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 5, 534
HapII CCGG 2 cut(s) 52, 764
HgaI GACGC 1 cut(s) 725
HhaI GCGC 5 cut(s) 156, 693, 695, 771, 856
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 6 cut(s) 153, 244, 515, 641, 824, 836
Hin6I GCGC 5 cut(s) 154, 691, 693, 769, 854
HinP1I GCGC 5 cut(s) 154, 691, 693, 769, 854
HinfI GANTC 4 cut(s) 159, 170, 369, 824
HpaII CCGG 2 cut(s) 52, 764
HphI GGTGA 3 cut(s) 73, 136, 265
Hpy166II GTNNAC 3 cut(s) 144, 304, 644
Hpy188I TCNGA 4 cut(s) 135, 319, 397, 432
Hpy188III TCNNGA 8 cut(s) 115, 174, 231, 521, 701, 758, 764, 821
Hpy8I GTNNAC 3 cut(s) 144, 304, 644
HpyAV CCTTC 2 cut(s) 505, 562
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 3 cut(s) 78, 138, 844
HpyCH4V TGCA 7 cut(s) 165, 304, 614, 626, 637, 781, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 540
HpySE526I ACGT 3 cut(s) 78, 138, 844
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 6 cut(s) 153, 244, 515, 641, 824, 836
HspAI GCGC 5 cut(s) 154, 691, 693, 769, 854
Kpn2I TCCGGA 1 cut(s) 763
Kzo9I GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
LmnI GCTCC 5 cut(s) 54, 320, 433, 441, 766
Lsp1109I GCAGC 1 cut(s) 702
LweI GCATC 2 cut(s) 601, 776
MaeI CTAG 2 cut(s) 174, 678
MaeII ACGT 3 cut(s) 78, 138, 844
MaeIII GTNAC 3 cut(s) 79, 124, 723
MalI GATC 9 cut(s) 62, 113, 119, 270, 324, 674, 732, 756, 762
MbiI CCGCTC 2 cut(s) 28, 131
MboI GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
MboII GAAGA 2 cut(s) 86, 785
MflI RGATCY 2 cut(s) 117, 760
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 5 cut(s) 355, 406, 563, 776, 798
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 9 cut(s) 22, 77, 238, 296, 338, 501, 555, 662, 828
Mph1103I ATGCAT 2 cut(s) 639, 791
MroI TCCGGA 1 cut(s) 763
MslI CAYNNNNRTG 1 cut(s) 837
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 2 cut(s) 52, 764
MspR9I CCNGG 2 cut(s) 52, 122
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 3 cut(s) 693, 771, 854
MwoI GCNNNNNNNGC 2 cut(s) 162, 540
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 240
NdeII GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
NlaIII CATG 6 cut(s) 153, 244, 515, 641, 824, 836
NlaIV GGNNCC 3 cut(s) 316, 429, 762
NmuCI GTSAC 3 cut(s) 79, 124, 723
NsiI ATGCAT 2 cut(s) 639, 791
NspI RCATGY 1 cut(s) 515
PagI TCATGA 1 cut(s) 820
PauI GCGCGC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 4 cut(s) 159, 170, 369, 824
PflMI CCANNNNNTGG 1 cut(s) 661
PkrI GCNGC 6 cut(s) 30, 378, 427, 717, 813, 853
Ple19I CGATCG 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 316, 429, 762
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 2 cut(s) 117, 760
PteI GCGCGC 1 cut(s) 691
PvuI CGATCG 1 cut(s) 114
RsaI GTAC 4 cut(s) 145, 350, 452, 575
RsaNI GTAC 4 cut(s) 144, 349, 451, 574
RseI CAYNNNNRTG 1 cut(s) 837
SatI GCNGC 6 cut(s) 29, 377, 426, 716, 812, 852
Sau3AI GATC 9 cut(s) 60, 111, 117, 268, 322, 672, 730, 754, 760
ScrFI CCNGG 2 cut(s) 52, 122
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 2 cut(s) 601, 776
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 5 cut(s) 355, 406, 563, 776, 798
SsiI CCGC 9 cut(s) 28, 84, 129, 376, 425, 440, 713, 811, 852
SspMI CTAG 2 cut(s) 174, 678
StyD4I CCNGG 2 cut(s) 50, 120
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 3 cut(s) 81, 141, 847
TaqI TCGA 5 cut(s) 63, 89, 114, 192, 483
TasI AATT 5 cut(s) 355, 406, 563, 776, 798
TatI WGTACW 1 cut(s) 573
TauI GCSGC 5 cut(s) 31, 379, 428, 814, 854
TfiI GAWTC 4 cut(s) 159, 170, 369, 824
TscAI CASTG 4 cut(s) 304, 346, 564, 586
TseFI GTSAC 3 cut(s) 79, 124, 723
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 3 cut(s) 79, 124, 723
TspDTI ATGAA 1 cut(s) 855
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 304, 346, 564, 586
Van91I CCANNNNNTGG 1 cut(s) 661
VneI GTGCAC 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 2 cut(s) 174, 678
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 2 cut(s) 639, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.