Rmu_co8379153.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8379153.1
OG0000331
Physical Location & Seq
Forward (+)
1 .. 620
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8379153.1_g000001.1.cds

Sequence Viewer

Length: 620 bp
taacggatgagggattgagtgaagtggctttgaagcttccgatgttggaggaccttgaaatttcgttgtgcacgctttcgcacgaacctctagaggttgttgggcgctcttgtccgcttttgaagtctgtgaaactgaacaaccactggtaccaattcccgccggataagtgtaatgatgatgcacttgccgtagcaggaacgatgcgaggtttgcagcacctccagctttttgggaataagctgacgaatgatggcttgagggaaattctcgattgttgtcctcatcttgagtcacttgatctgcgccactgtttcaaccttaacctggagggagatttggagaaaagattgactggacaaattagaaggttacggcttccttatgattccactgaagactatgagtttgatgctatatctaatggttatgaatcacgtgataatgatggggactccccatatggtttttctgacagtaatttgttgtctgatgattatgaggagtatggattttcaagtgggagcgatttctatgactatgattatgaggattttgatgattttactagacttgacttgtatgactttggtgacatagatacccttcctagcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

4.16

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 2 cut(s) 115, 160
AcsI RAATTY 2 cut(s) 59, 266
AcuI CTGAAG 1 cut(s) 416
AcvI CACGTG 1 cut(s) 439
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 5 cut(s) 33, 58, 123, 318, 518
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 4 cut(s) 36, 228, 243, 617
AluI AGCT 4 cut(s) 36, 228, 243, 617
Alw21I GWGCWC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 216, 614
ApoI RAATTY 2 cut(s) 59, 266
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 107, 308
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 604
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 247, 442
BceAI ACGGC 2 cut(s) 175, 391
BciT130I CCWGG 1 cut(s) 328
BfaI CTAG 3 cut(s) 91, 569, 611
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 217, 615
BlsI GCNGC 2 cut(s) 218, 616
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 3 cut(s) 171, 194, 402
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 2 cut(s) 208, 349
BpuEI CTTGAG 2 cut(s) 279, 310
BsaAI YACGTR 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 151, 360
BseBI CCWGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 151, 360
BseRI GAGGAG 1 cut(s) 517
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 2 cut(s) 115, 160
BspLI GGNNCC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 151, 360
BssMI GATC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 313, 478
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 308
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 213, 225
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 144, 309, 392
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 2 cut(s) 107, 308
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 150
CviJI RGCY 7 cut(s) 28, 36, 228, 243, 257, 378, 617
CviKI_1 RGCY 7 cut(s) 28, 36, 228, 243, 257, 378, 617
CviQI GTAC 1 cut(s) 150
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 416
Eco72I CACGTG 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 326
FaqI GGGAC 1 cut(s) 466
FauI CCCGC 1 cut(s) 167
FauNDI CATATG 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 217, 615
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 217, 615
FspBI CTAG 3 cut(s) 91, 569, 611
GlaI GCGC 2 cut(s) 106, 307
GluI GCNGC 2 cut(s) 217, 615
GsuI CTGGAG 2 cut(s) 208, 349
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 1 cut(s) 163
HhaI GCGC 2 cut(s) 107, 308
Hin6I GCGC 2 cut(s) 105, 306
HinP1I GCGC 2 cut(s) 105, 306
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 4 cut(s) 292, 388, 433, 454
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 41, 474, 492
Hpy188III TCNNGA 3 cut(s) 91, 271, 289
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 362, 616
HpyCH4III ACNGT 2 cut(s) 313, 478
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 71, 184, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 225
HpySE526I ACGT 1 cut(s) 438
HspAI GCGC 2 cut(s) 105, 306
KpnI GGTACC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 7 cut(s) 132, 176, 182, 238, 313, 340, 341
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 3 cut(s) 171, 194, 402
MaeI CTAG 3 cut(s) 91, 569, 611
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 293, 371, 592
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 5 cut(s) 59, 154, 266, 362, 480
MlyI GAGTC 2 cut(s) 301, 448
MmeI TCCRAC 1 cut(s) 26
MseI TTAA 1 cut(s) 323
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 213, 225
NdeI CATATG 1 cut(s) 462
NdeII GATC 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 293, 592
PfeI GAWTC 2 cut(s) 388, 433
PkrI GCNGC 2 cut(s) 218, 616
PleI GAGTC 2 cut(s) 300, 448
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 2 cut(s) 300, 448
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 326
PspCI CACGTG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 2 cut(s) 217, 615
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 2 cut(s) 301, 448
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 3 cut(s) 171, 194, 402
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 258, 289
SmoI CTYRAG 2 cut(s) 258, 289
Sse9I AATT 5 cut(s) 59, 154, 266, 362, 480
SsiI CCGC 2 cut(s) 115, 160
SspMI CTAG 3 cut(s) 91, 569, 611
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 313, 478
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 272
TasI AATT 5 cut(s) 59, 154, 266, 362, 480
TfiI GAWTC 2 cut(s) 388, 433
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 3 cut(s) 151, 316, 399
TseFI GTSAC 2 cut(s) 293, 592
TseI GCWGC 2 cut(s) 216, 614
Tsp45I GTSAC 2 cut(s) 293, 592
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 3 cut(s) 151, 316, 399
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 59, 266
XbaI TCTAGA 1 cut(s) 90
XspI CTAG 3 cut(s) 91, 569, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.