Rh5DG117000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000331
Physical Location & Seq
Forward (+)
10580830 .. 10582556
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117000.1

Sequence Viewer

Length: 1032 bp
ATGGTCAGATCCTCAACAAAGCGAAACCGCCTAAACTCGGCGGAGCTCCCCAATCGAACCCGGCGAAACTGGTCGGAGCTCCCCGAGGAACTCACCTTTCAGGTCCTGTCTCGGCTCGGAGCCATCGATGTTCTGACCAGCGCTCAGAAGGTGTGTACGCAATGGCGGCGAATGTGTAAGCACCCGATGGTCTGGCGCACCATCGACATGGCCAACGATCACTTTTTCCACGAAGTTCACTACGATTTGGACAAGATGTGCCGCCACGCCGTTGATCGGAGCTTCGGTAGAGTGGAGGATATCAATGTGGAGTACTTCGGCACCGACCAATTGCTCAAGTACATCACTGATAGTTCAAGTGGAATCAAACGCCTCAGCTTGGCACATTGCCCTAGTATAACAGATAAAGGATTGACTGAAATGGCTCCGAAACTTCCATTGTTGGAGGACCTTGACATTACGTCCTGCAAAAATATCTCACATGAACCTCTGAAAGTGATTGGTAGCAGTTGCCCTCTTTTAAAATCATTCAAATTGGACGCGTGGTTTAAACTACCAGAAGATGAGGTTTATGATGATACAGTTTTCAATATCGAGGAAGGGGATGTGGAGGTGGAGGCGAATGCAGAGGTAAATGCCAATGCGGTTGCGGAAGTCGTTATGGATAGGGAGATGGATGCAGATGCGCTTGCTATAGCAGGGTCGATGCATGGTTTACACCATCTTCAGCTTTTTCGGAATGAGCTGACTAATGATGGCTTAAATGAAATTCTTGATCATTGTCCTCTTCTTGAGTCACTTGATCTGCGCTATTGTAACAATCTCAATCTGAAAGGAGATTTGGGTATCAAATGTGCTGAACGTATTAAGAGATTGCAGCTCCCCGATAACTCTACTGATATTCCTGAAACTGATCTTTTAAAAAAGGATACAGTTTGGTTCACCTACCGTTCAGCTGATGATGTTGAAGGTCATGTGGCTGACGTCATTATTGGCAAAACAATTGATTTCACTGATGATTATGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

343

Amino Acids

39.18

Weight (kDa)

4.95

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 24 - 69 9.4e-11 F-box-like
F-box PF00646 24 - 66 3.4e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 987
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 1 cut(s) 542
AciI CCGC 6 cut(s) 28, 41, 166, 262, 644, 650
AclWI GGATC 1 cut(s) 3
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 984
AfaI GTAC 3 cut(s) 157, 314, 341
AfeI AGCGCT 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 37, 276, 379
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 4 cut(s) 357, 532, 589, 968
AhdI GACNNNNNGTC 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 8 cut(s) 46, 79, 282, 378, 730, 745, 880, 956
AluI AGCT 8 cut(s) 46, 79, 282, 378, 730, 745, 880, 956
Alw21I GWGCWC 2 cut(s) 48, 81
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 83
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 877
ApoI RAATTY 1 cut(s) 768
AspLEI GCGC 4 cut(s) 143, 198, 688, 810
AspS9I GGNCC 2 cut(s) 103, 448
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 85, 934
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 103, 448
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 48, 81
Bbv12I GWGCWC 2 cut(s) 48, 81
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 889
BccI CCATC 6 cut(s) 131, 181, 209, 667, 729, 749
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 922
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 1 cut(s) 922
BisI GCNGC 3 cut(s) 167, 262, 878
BlsI GCNGC 3 cut(s) 168, 263, 879
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 2 cut(s) 103, 448
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 103, 448
BmiI GGNNCC 3 cut(s) 121, 322, 426
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 667, 673, 696
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 320, 812
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 984
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 276, 379
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 167, 385
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 610, 682
BseLI CCNNNNNNNGG 3 cut(s) 37, 276, 379
BseMI GCAATG 2 cut(s) 167, 385
BseMII CTCAG 2 cut(s) 158, 388
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 889
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 48, 81
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 37, 276, 379
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 48, 81
Bsp143I GATC 6 cut(s) 8, 217, 274, 775, 802, 913
BspACI CCGC 6 cut(s) 28, 41, 166, 262, 644, 650
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 157, 387
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 3 cut(s) 121, 322, 426
BspPI GGATC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 167, 385
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 6 cut(s) 8, 217, 274, 775, 802, 913
BssNI GRCGYC 1 cut(s) 984
Bst4CI ACNGT 3 cut(s) 583, 934, 950
Bst6I CTCTTC 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 984
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 2 cut(s) 144, 374
BstF5I GGATG 2 cut(s) 610, 682
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 4 cut(s) 143, 198, 688, 810
BstKTI GATC 6 cut(s) 11, 220, 277, 778, 805, 916
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 6 cut(s) 8, 217, 274, 775, 802, 913
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 1 cut(s) 889
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 126
BsuI GTATCC 1 cut(s) 922
BsuRI GGCC 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 2 cut(s) 610, 682
BtsIMutI CAGTG 2 cut(s) 345, 1011
Cac8I GCNNGC 1 cut(s) 690
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 4 cut(s) 143, 198, 688, 810
Cfr13I GGNCC 2 cut(s) 103, 448
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 156, 313, 340
CviAII CATG 4 cut(s) 208, 482, 710, 974
CviQI GTAC 3 cut(s) 156, 313, 340
DdeI CTNAG 2 cut(s) 144, 374
DpnI GATC 6 cut(s) 10, 219, 276, 777, 804, 915
DpnII GATC 6 cut(s) 8, 217, 274, 775, 802, 913
DraI TTTAAA 3 cut(s) 522, 550, 921
DriI GACNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 792
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 2 cut(s) 46, 79
Eco24I GRGCYC 2 cut(s) 48, 81
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 103, 448
Eco47III AGCGCT 1 cut(s) 142
Eco53kI GAGCTC 2 cut(s) 46, 79
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 46, 79
EcoO109I RGGNCCY 2 cut(s) 103, 448
EcoRV GATATC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 48, 81
FaeI CATG 4 cut(s) 211, 485, 713, 977
FaiI YATR 9 cut(s) 209, 398, 483, 573, 662, 695, 711, 975, 1023
FatI CATG 4 cut(s) 207, 481, 709, 973
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 167, 262, 878
FokI GGATG 2 cut(s) 617, 689
FriOI GRGCYC 2 cut(s) 48, 81
Fsp4HI GCNGC 3 cut(s) 167, 262, 878
FspBI CTAG 1 cut(s) 393
GlaI GCGC 4 cut(s) 142, 197, 687, 809
GluI GCNGC 3 cut(s) 167, 262, 878
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 61
HgaI GACGC 1 cut(s) 548
HhaI GCGC 4 cut(s) 143, 198, 688, 810
Hin1I GRCGYC 1 cut(s) 984
Hin1II CATG 4 cut(s) 211, 485, 713, 977
Hin6I GCGC 4 cut(s) 141, 196, 686, 808
HinP1I GCGC 4 cut(s) 141, 196, 686, 808
HinfI GANTC 2 cut(s) 363, 794
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 85, 934
Hpy166II GTNNAC 4 cut(s) 156, 238, 716, 942
Hpy188III TCNNGA 3 cut(s) 773, 791, 905
Hpy8I GTNNAC 4 cut(s) 156, 238, 716, 942
HpyAV CCTTC 3 cut(s) 142, 593, 962
HpyCH4III ACNGT 3 cut(s) 583, 934, 950
HpyCH4IV ACGT 3 cut(s) 461, 862, 984
HpyCH4V TGCA 5 cut(s) 468, 626, 680, 709, 877
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 144, 374
HpySE526I ACGT 3 cut(s) 461, 862, 984
Hsp92I GRCGYC 1 cut(s) 984
Hsp92II CATG 4 cut(s) 211, 485, 713, 977
HspAI GCGC 4 cut(s) 141, 196, 686, 808
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 6 cut(s) 8, 217, 274, 775, 802, 913
LmnI GCTCC 8 cut(s) 43, 51, 76, 84, 119, 279, 430, 885
Lsp1109I GCAGC 1 cut(s) 889
LweI GCATC 3 cut(s) 667, 673, 696
MaeI CTAG 1 cut(s) 393
MaeII ACGT 3 cut(s) 461, 862, 984
MaeIII GTNAC 2 cut(s) 795, 815
MalI GATC 6 cut(s) 10, 219, 276, 777, 804, 915
MboI GATC 6 cut(s) 8, 217, 274, 775, 802, 913
MboII GAAGA 3 cut(s) 572, 716, 779
MfeI CAATTG 2 cut(s) 329, 1002
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 48, 81
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 329, 533, 768, 1002
MluI ACGCGT 1 cut(s) 540
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 2 cut(s) 54, 423
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 711
MscI TGGCCA 1 cut(s) 212
MseI TTAA 5 cut(s) 521, 549, 761, 867, 920
MslI CAYNNNNRTG 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 61
MssI GTTTAAAC 1 cut(s) 550
MunI CAATTG 2 cut(s) 329, 1002
Mva1269I GAATGC 1 cut(s) 628
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 61
NdeII GATC 6 cut(s) 8, 217, 274, 775, 802, 913
NlaIII CATG 4 cut(s) 211, 485, 713, 977
NlaIV GGNNCC 3 cut(s) 121, 322, 426
NmeAIII GCCGAG 2 cut(s) 17, 91
NmuCI GTSAC 1 cut(s) 795
NsiI ATGCAT 1 cut(s) 711
PcsI WCGNNNNNNNCGW 2 cut(s) 61, 123
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 3 cut(s) 168, 263, 879
PleI GAGTC 1 cut(s) 802
PmeI GTTTAAAC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 802
PpuMI RGGWCCY 2 cut(s) 103, 448
Psp124BI GAGCTC 2 cut(s) 48, 81
Psp5II RGGWCCY 2 cut(s) 103, 448
PspN4I GGNNCC 3 cut(s) 121, 322, 426
PspPI GGNCC 2 cut(s) 103, 448
PspPPI RGGWCCY 2 cut(s) 103, 448
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 3 cut(s) 157, 314, 341
RsaNI GTAC 3 cut(s) 156, 313, 340
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 2 cut(s) 48, 81
SaqAI TTAA 5 cut(s) 521, 549, 761, 867, 920
SatI GCNGC 3 cut(s) 167, 262, 878
Sau3AI GATC 6 cut(s) 8, 217, 274, 775, 802, 913
Sau96I GGNCC 2 cut(s) 103, 448
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 48, 81
SfaNI GCATC 3 cut(s) 667, 673, 696
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 2 cut(s) 103, 448
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 335, 791
SmoI CTYRAG 2 cut(s) 335, 791
Sse9I AATT 4 cut(s) 329, 533, 768, 1002
SsiI CCGC 6 cut(s) 28, 41, 166, 262, 644, 650
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 2 cut(s) 48, 81
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 583, 934, 950
TaiI ACGT 3 cut(s) 464, 865, 987
TaqI TCGA 5 cut(s) 55, 126, 204, 594, 704
TasI AATT 4 cut(s) 329, 533, 768, 1002
TatI WGTACW 2 cut(s) 312, 339
TauI GCSGC 2 cut(s) 169, 264
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 5 cut(s) 521, 549, 761, 867, 920
Tru9I TTAA 5 cut(s) 521, 549, 761, 867, 920
TscAI CASTG 2 cut(s) 352, 1018
TseFI GTSAC 1 cut(s) 795
TseI GCWGC 1 cut(s) 877
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 2 cut(s) 498, 780
TspRI CASTG 2 cut(s) 352, 1018
VpaK11BI GGWCC 2 cut(s) 103, 448
XapI RAATTY 1 cut(s) 768
XspI CTAG 1 cut(s) 393
ZraI GACGTC 1 cut(s) 985
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.