AT4G05490

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Reverse (-)
2771044 .. 2772252
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05490.1

Sequence Viewer

Length: 924 bp
ATGGTTACTTCCTCGTCTTCGCCGCCGTTGGCTACTTCCCAGCTTCCGGTGATGAAAGGCGAAGAAAAGCCTTCAAACTGGGCGGAGCTACCCCCGGATTTGCTGTCTTCAATTCTACTCCGTCTTAGCCCATTGGAGATACTTGAAAACGCTCGGAAAGTATGCAGATCGTGGCGACGCGTCTCTAAAGACCCATTGATTTGGCGTAGAATCGACATGAGAAACCTGAGAAGATTGTACTGTATTTACGCTATGGAAGCCTGTTGTCGTCACGTCGTTGATCTCAGCCAGGGAGGCTTGCTTGAGTTCAACATTGATCAGTGGCGCTTTCAGACCACTTCTCTACTCAACTACATGGCCGAGAGATCAAGTAATCTGAGACGTCTTAGGGTTAAAGGTGGTCAAATAACGAGTGTTGGAATTTTTGAAGCAATCGTGAAACTGCCATTGCTTGAAGAACTCGAGCTTTTGTACTGCTCAATCGAAGAAGAGCATTTCAAAACTATAGGCCAGGCTTGTCCAAATCTGAAGACATTGAAACTAGTGGGGTTTTGGAGTCATCTAAATGAGAGTGACAATGATGCTCTAGCAATTGCTGACACCATGCCTGGTCTTCTCCACCTCCAGCTTATTAGTAACGGACTAACCAACATTGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAATGCCTTGATTTACGCCAGTGTTTCAACATTAACCTTTTTGGGGATTTGGAGAGACAATGTTTGGAGAGGATCAAAGATTTTAGATGCCCCAATGATGTACTTGATGATTACAATTATGTCATTTTCTCCGATAATGGTTCGATAGAAGACGAAAAAGGCGAAGAAGAGGAAAATTACTCATATGGTAGCGATGACACTGAGTACGGCTACAGAAGGTCAGCTGACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

307

Amino Acids

35.15

Weight (kDa)

4.96

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 27 - 73 7.1e-11 F-box-like
F-box PF00646 27 - 69 1.1e-08 F-box domain
LRR_At5g56370 PF24758 101 - 183 7.8e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 23, 83
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 4 cut(s) 239, 473, 792, 896
AfiI CCNNNNNNNGG 2 cut(s) 46, 733
AflIII ACRYGT 1 cut(s) 178
AhlI ACTAGT 1 cut(s) 541
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 4 cut(s) 288, 510, 607, 687
AluBI AGCT 5 cut(s) 43, 88, 466, 628, 914
AluI AGCT 5 cut(s) 43, 88, 466, 628, 914
Alw26I GTCTC 3 cut(s) 187, 373, 739
AlwI GGATC 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 2 cut(s) 357, 508
ApoI RAATTY 1 cut(s) 420
AspLEI GCGC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 61, 677
AvaI CYCGRG 1 cut(s) 461
BbsI GAAGAC 5 cut(s) 9, 99, 536, 605, 846
BceAI ACGGC 2 cut(s) 10, 913
BciT130I CCWGG 4 cut(s) 290, 512, 609, 689
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 3 cut(s) 187, 373, 739
BcuI ACTAGT 1 cut(s) 541
BfaI CTAG 2 cut(s) 542, 587
BfmI CTRYAG 2 cut(s) 504, 901
BfoI RGCGCY 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 5 cut(s) 95, 290, 512, 609, 689
BmeT110I CYCGRG 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 274
BmrFI CCNGG 5 cut(s) 95, 290, 512, 609, 689
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 571, 767
BmuI ACTGGG 1 cut(s) 88
BoxI GACNNNNGTC 1 cut(s) 678
BpiI GAAGAC 5 cut(s) 9, 99, 536, 605, 846
BpmI CTGGAG 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 93, 289
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 733
Bse1I ACTGG 2 cut(s) 83, 709
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 4 cut(s) 290, 512, 609, 689
BseDI CCNNGG 2 cut(s) 93, 289
BseLI CCNNNNNNNGG 2 cut(s) 46, 733
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 4 cut(s) 218, 298, 368, 882
BseNI ACTGG 2 cut(s) 83, 709
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 359, 510
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 47, 95
BslI CCNNNNNNNGG 2 cut(s) 46, 733
BsmAI GTCTC 3 cut(s) 187, 373, 739
BsmBI CGTCTC 2 cut(s) 187, 373
BsmI GAATGC 2 cut(s) 667, 698
BsnI GGCC 2 cut(s) 359, 510
BsoBI CYCGRG 1 cut(s) 461
Bsp143I GATC 5 cut(s) 167, 280, 316, 365, 762
BspACI CCGC 2 cut(s) 23, 83
BspANI GGCC 2 cut(s) 359, 510
BspCNI CTCAG 4 cut(s) 219, 297, 369, 883
BspFNI CGCG 1 cut(s) 180
BspPI GGATC 1 cut(s) 770
BspQI GCTCTTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 2 cut(s) 83, 709
BssECI CCNNGG 2 cut(s) 93, 289
BssMI GATC 5 cut(s) 167, 280, 316, 365, 762
BssNI GRCGYC 1 cut(s) 382
Bst2UI CCWGG 4 cut(s) 290, 512, 609, 689
Bst4CI ACNGT 2 cut(s) 242, 677
Bst6I CTCTTC 2 cut(s) 483, 852
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 6 cut(s) 125, 227, 284, 377, 386, 891
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 5 cut(s) 170, 283, 319, 368, 765
BstMAI GTCTC 3 cut(s) 187, 373, 739
BstMBI GATC 5 cut(s) 167, 280, 316, 365, 762
BstMWI GCNNNNNNNGC 2 cut(s) 257, 294
BstNI CCWGG 4 cut(s) 290, 512, 609, 689
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 5 cut(s) 93, 288, 510, 607, 687
BstSFI CTRYAG 2 cut(s) 504, 901
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 5 cut(s) 9, 99, 536, 605, 846
BstXI CCANNNNNNTGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 359, 510
BtgZI GCGATG 1 cut(s) 897
BtrI CACGTC 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 326, 716, 888
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 327
CseI GACGC 2 cut(s) 169, 186
Csp6I GTAC 4 cut(s) 238, 472, 791, 895
CviAII CATG 3 cut(s) 217, 355, 604
CviQI GTAC 4 cut(s) 238, 472, 791, 895
DdeI CTNAG 6 cut(s) 125, 227, 284, 377, 386, 891
DpnI GATC 5 cut(s) 169, 282, 318, 367, 764
DpnII GATC 5 cut(s) 167, 280, 316, 365, 762
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 483, 852
EarI CTCTTC 2 cut(s) 483, 852
EciI GGCGGA 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 461
EcoRII CCWGG 4 cut(s) 288, 510, 607, 687
Esp3I CGTCTC 2 cut(s) 187, 373
FaeI CATG 3 cut(s) 220, 358, 607
FaiI YATR 9 cut(s) 163, 218, 254, 356, 506, 605, 810, 874, 876
FatI CATG 3 cut(s) 216, 354, 603
FauNDI CATATG 1 cut(s) 874
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 2 cut(s) 542, 587
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 359, 510
HapII CCGG 2 cut(s) 47, 95
HgaI GACGC 2 cut(s) 169, 186
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 3 cut(s) 220, 358, 607
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 2 cut(s) 210, 556
HpaII CCGG 2 cut(s) 47, 95
HphI GGTGA 2 cut(s) 61, 677
Hpy188I TCNGA 5 cut(s) 156, 333, 378, 528, 823
Hpy188III TCNNGA 2 cut(s) 436, 671
Hpy99I CGWCG 3 cut(s) 180, 278, 677
HpyAV CCTTC 2 cut(s) 81, 900
HpyCH4III ACNGT 2 cut(s) 242, 677
HpyCH4IV ACGT 2 cut(s) 273, 382
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 294
HpyF3I CTNAG 6 cut(s) 125, 227, 284, 377, 386, 891
HpySE526I ACGT 2 cut(s) 273, 382
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 3 cut(s) 220, 358, 607
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 5 cut(s) 167, 280, 316, 365, 762
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 85
LweI GCATC 2 cut(s) 571, 767
MaeI CTAG 2 cut(s) 542, 587
MaeII ACGT 2 cut(s) 273, 382
MaeIII GTNAC 4 cut(s) 4, 269, 572, 635
MalI GATC 5 cut(s) 169, 282, 318, 367, 764
MboI GATC 5 cut(s) 167, 280, 316, 365, 762
MfeI CAATTG 1 cut(s) 591
MluCI AATT 5 cut(s) 111, 420, 591, 805, 865
MluI ACGCGT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 6 cut(s) 22, 287, 632, 693, 753, 853
MseI TTAA 2 cut(s) 393, 723
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 2 cut(s) 47, 95
MspR9I CCNGG 5 cut(s) 95, 290, 512, 609, 689
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 2 cut(s) 667, 698
MvaI CCWGG 4 cut(s) 290, 512, 609, 689
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 257, 294
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 874
NdeII GATC 5 cut(s) 167, 280, 316, 365, 762
NlaIII CATG 3 cut(s) 220, 358, 607
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 269, 572
PaeR7I CTCGAG 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PctI GAATGC 2 cut(s) 667, 698
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
PshAI GACNNNNGTC 1 cut(s) 678
Psp6I CCWGG 4 cut(s) 288, 510, 607, 687
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 4 cut(s) 288, 510, 607, 687
PspXI VCTCGAGB 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 4 cut(s) 239, 473, 792, 896
RsaNI GTAC 4 cut(s) 238, 472, 791, 895
RseI CAYNNNNRTG 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 2 cut(s) 393, 723
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 5 cut(s) 167, 280, 316, 365, 762
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 5 cut(s) 95, 290, 512, 609, 689
SfaNI GCATC 2 cut(s) 571, 767
SfcI CTRYAG 2 cut(s) 504, 901
Sfr274I CTCGAG 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 302, 461
SmoI CTYRAG 2 cut(s) 302, 461
SpeI ACTAGT 1 cut(s) 541
Sse9I AATT 5 cut(s) 111, 420, 591, 805, 865
SsiI CCGC 2 cut(s) 23, 83
SspMI CTAG 2 cut(s) 542, 587
StyD4I CCNGG 5 cut(s) 93, 288, 510, 607, 687
TaaI ACNGT 2 cut(s) 242, 677
TaiI ACGT 2 cut(s) 276, 385
TaqI TCGA 5 cut(s) 213, 462, 483, 672, 833
TasI AATT 5 cut(s) 111, 420, 591, 805, 865
TatI WGTACW 3 cut(s) 237, 471, 790
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 393, 723
Tru9I TTAA 2 cut(s) 393, 723
TscAI CASTG 3 cut(s) 326, 716, 895
TseFI GTSAC 2 cut(s) 269, 572
Tsp45I GTSAC 2 cut(s) 269, 572
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 110, 654
TspRI CASTG 3 cut(s) 326, 716, 895
XapI RAATTY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 461
XspI CTAG 2 cut(s) 542, 587
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.