Rmu_sc0002209.1_g000013

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002209.1
OG0000331
Physical Location & Seq
Forward (+)
37757 .. 39120
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002209.1_g000013.1.cds

Sequence Viewer

Length: 1041 bp
atggacaacaaaagcaaccagaaaaccctaggctcaaagcccaaaccctcgccgccgccgccgtccagatccacccccgtccgccaccgtaactggctcgaactcccgccggagatcaccgcttcgatactttcgcggctcggagcgatcgagatcctgacggccgccgagaaggtctgcagatcctggcgcgcaatctgcaaggacccactgatgtggcgcaccatcgatatgcgcaacgacggcgaccttcacgacatgacgtatgatttggagaagatgtgctgccacgccgttgatcggagctgtggtcagctcgtcgatatgaccgtcgagtacttcggcagcgatgagctgctcaagtatatcaccgatagatcaagtgggatcagacgcctccgaatagtgcggtgttatttcataacggatgagggattgagtgaagtggctttgaagcttccgatgttggaggaccttgaaatttcgttgtgcacgctttcgcacgaacctctagaggttgttgggcgctcttgtccgcttttgaagtctgtgaaactgaacaaccactggtaccaattcccgccggataagtgtaatgatgatgcacttgcagtagcaggaacgatgcgaggtttgcagcacctccagctttttgggaataagctgacgaatgatggcttgagggaaattctcgattgttgtcctcatcttgagtcacttgatctgcgccactgtttcaaccttaacctggagggagatttggagaaaagattgactggacaaattaaaaggttacggcttccttatgattccactgaagactatgagtttgatgctatatctaatggttatgaatcacgtgataatgatggggactccccatatggtttttctgacagtaatttgttgtctgatgattatgaggagtatggattttcaagtgggagcgatttctatgactatgattatgaggattttgatgattttactagacttgacttgtatgactttggtgacatagatacccttcctagcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

346

Amino Acids

39.58

Weight (kDa)

4.67

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 236
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 570
AccII CGCG 2 cut(s) 136, 192
AclWI GGATC 4 cut(s) 63, 148, 177, 395
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 2 cut(s) 480, 687
AcuI CTGAAG 1 cut(s) 837
AcvI CACGTG 1 cut(s) 860
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 2 cut(s) 338, 572
AfiI CCNNNNNNNGG 2 cut(s) 300, 748
AgsI TTSAA 5 cut(s) 454, 479, 544, 739, 939
AjnI CCWGG 2 cut(s) 185, 747
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 7 cut(s) 306, 316, 355, 457, 649, 664, 1038
AluI AGCT 7 cut(s) 306, 316, 355, 457, 649, 664, 1038
Alw21I GWGCWC 1 cut(s) 494
Alw44I GTGCAC 1 cut(s) 490
AlwI GGATC 4 cut(s) 63, 148, 177, 395
AlwNI CAGNNNCTG 1 cut(s) 186
AoxI GGCC 1 cut(s) 162
ApaLI GTGCAC 1 cut(s) 490
ApeKI GCWGC 5 cut(s) 285, 345, 355, 637, 1035
ApoI RAATTY 2 cut(s) 480, 687
ArsI GACNNNNNNTTYG 4 cut(s) 253, 285, 812, 844
Asp718I GGTACC 1 cut(s) 570
AspA2I CCTAGG 1 cut(s) 28
AspLEI GCGC 6 cut(s) 192, 194, 222, 237, 528, 729
AspS9I GGNCC 2 cut(s) 205, 472
AsuHPI GGTGA 3 cut(s) 109, 361, 1025
AvaII GGWCC 2 cut(s) 205, 472
AvrII CCTAGG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 570
BbrPI CACGTG 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 494
BbvI GCAGC 4 cut(s) 272, 342, 357, 649
BccI CCATC 3 cut(s) 233, 668, 863
BceAI ACGGC 5 cut(s) 46, 177, 259, 278, 812
BciT130I CCWGG 2 cut(s) 187, 749
BfaI CTAG 4 cut(s) 29, 512, 990, 1032
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 529
BlnI CCTAGG 1 cut(s) 28
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 2 cut(s) 187, 749
Bme18I GGWCC 2 cut(s) 205, 472
BmgT120I GGNCC 2 cut(s) 205, 472
BmiI GGNNCC 2 cut(s) 207, 572
BmrFI CCNGG 2 cut(s) 187, 749
BmsI GCATC 3 cut(s) 592, 615, 823
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 629, 770
BpuEI CTTGAG 3 cut(s) 344, 700, 731
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 860
BsaBI GATNNNNATC 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 266, 295, 296, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 748
Bse1I ACTGG 3 cut(s) 98, 572, 781
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 2 cut(s) 187, 749
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 300, 748
BseNI ACTGG 3 cut(s) 98, 572, 781
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 938
BseSI GKGCMC 1 cut(s) 494
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 272, 342, 357, 649
Bsh1236I CGCG 2 cut(s) 136, 192
Bsh1285I CGRYCG 2 cut(s) 150, 165
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 570
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 150, 165
BsiHKAI GWGCWC 1 cut(s) 494
BsiSI CCGG 2 cut(s) 110, 584
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 2 cut(s) 300, 748
BsmFI GGGAC 1 cut(s) 887
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
BspANI GGCC 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 2 cut(s) 136, 192
BspLI GGNNCC 2 cut(s) 207, 572
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 4 cut(s) 63, 148, 177, 395
BspT107I GGYRCC 1 cut(s) 570
BsrI ACTGG 3 cut(s) 98, 572, 781
BssECI CCNNGG 1 cut(s) 28
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 187, 749
Bst4CI ACNGT 4 cut(s) 89, 331, 734, 899
BstACI GRCGYC 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 860
BstC8I GCNNGC 2 cut(s) 192, 494
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 2 cut(s) 136, 192
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 6 cut(s) 192, 194, 222, 237, 528, 729
BstKTI GATC 9 cut(s) 71, 117, 150, 156, 185, 301, 380, 390, 724
BstMBI GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
BstMCI CGRYCG 2 cut(s) 150, 165
BstMWI GCNNNNNNNGC 5 cut(s) 58, 198, 243, 634, 646
BstNI CCWGG 2 cut(s) 187, 749
BstSCI CCNGG 2 cut(s) 185, 747
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 2 cut(s) 136, 192
BstV1I GCAGC 4 cut(s) 272, 342, 357, 649
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 3 cut(s) 68, 153, 182
BstXI CCANNNNNNTGG 2 cut(s) 216, 653
BstYI RGATCY 3 cut(s) 68, 153, 182
BstZI CGGCCG 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 4 cut(s) 209, 565, 730, 813
Cac8I GCNNGC 2 cut(s) 192, 494
CaiI CAGNNNCTG 1 cut(s) 186
CfoI GCGC 6 cut(s) 192, 194, 222, 237, 528, 729
Cfr13I GGNCC 2 cut(s) 205, 472
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 337, 571
CviAII CATG 1 cut(s) 259
CviQI GTAC 2 cut(s) 337, 571
DpnI GATC 9 cut(s) 70, 116, 149, 155, 184, 300, 379, 389, 723
DpnII GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
EciI GGCGGA 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 205, 472
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 837
Eco72I CACGTG 1 cut(s) 860
EcoO109I RGGNCCY 2 cut(s) 205, 472
EcoRII CCWGG 2 cut(s) 185, 747
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 262
FaqI GGGAC 1 cut(s) 887
FatI CATG 1 cut(s) 258
FauI CCCGC 2 cut(s) 114, 588
FauNDI CATATG 1 cut(s) 883
FokI GGATG 1 cut(s) 440
FspBI CTAG 4 cut(s) 29, 512, 990, 1032
FspI TGCGCA 1 cut(s) 236
GlaI GCGC 6 cut(s) 191, 193, 221, 236, 527, 728
GsuI CTGGAG 2 cut(s) 629, 770
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 110, 584
HgaI GACGC 1 cut(s) 402
HhaI GCGC 6 cut(s) 192, 194, 222, 237, 528, 729
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 6 cut(s) 190, 192, 220, 235, 526, 727
HinP1I GCGC 6 cut(s) 190, 192, 220, 235, 526, 727
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 713, 809, 854, 875
HpaII CCGG 2 cut(s) 110, 584
HphI GGTGA 3 cut(s) 109, 361, 1025
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 7 cut(s) 143, 303, 392, 401, 462, 895, 913
Hpy188III TCNNGA 7 cut(s) 66, 151, 157, 254, 512, 692, 710
Hpy8I GTNNAC 1 cut(s) 492
Hpy99I CGWCG 3 cut(s) 245, 323, 335
HpyAV CCTTC 3 cut(s) 166, 260, 1037
HpyCH4III ACNGT 4 cut(s) 89, 331, 734, 899
HpyCH4IV ACGT 2 cut(s) 263, 859
HpyCH4V TGCA 6 cut(s) 180, 201, 492, 605, 611, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 198, 243, 634, 646
HpySE526I ACGT 2 cut(s) 263, 859
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 6 cut(s) 190, 192, 220, 235, 526, 727
KpnI GGTACC 1 cut(s) 574
Kzo9I GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
LmnI GCTCC 3 cut(s) 143, 303, 945
Lsp1109I GCAGC 4 cut(s) 272, 342, 357, 649
LweI GCATC 3 cut(s) 592, 615, 823
MaeI CTAG 4 cut(s) 29, 512, 990, 1032
MaeII ACGT 2 cut(s) 263, 859
MaeIII GTNAC 4 cut(s) 89, 714, 792, 1013
MalI GATC 9 cut(s) 70, 116, 149, 155, 184, 300, 379, 389, 723
MboI GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
MboII GAAGA 2 cut(s) 289, 830
MflI RGATCY 3 cut(s) 68, 153, 182
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 5 cut(s) 480, 575, 687, 783, 901
MlyI GAGTC 2 cut(s) 722, 869
MmeI TCCRAC 1 cut(s) 447
MseI TTAA 2 cut(s) 744, 786
MslI CAYNNNNRTG 2 cut(s) 214, 230
MspI CCGG 2 cut(s) 110, 584
MspR9I CCNGG 2 cut(s) 187, 749
MvaI CCWGG 2 cut(s) 187, 749
MvnI CGCG 2 cut(s) 136, 192
MwoI GCNNNNNNNGC 5 cut(s) 58, 198, 243, 634, 646
NdeI CATATG 1 cut(s) 883
NdeII GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 207, 572
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 714, 1013
NsbI TGCGCA 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 214
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 327
PfeI GAWTC 2 cut(s) 809, 854
Ple19I CGATCG 1 cut(s) 150
PleI GAGTC 2 cut(s) 721, 869
PmaCI CACGTG 1 cut(s) 860
PmlI CACGTG 1 cut(s) 860
PpsI GAGTC 2 cut(s) 721, 869
Ppu21I YACGTR 1 cut(s) 860
PpuMI RGGWCCY 2 cut(s) 205, 472
Psp5II RGGWCCY 2 cut(s) 205, 472
Psp6I CCWGG 2 cut(s) 185, 747
PspCI CACGTG 1 cut(s) 860
PspGI CCWGG 2 cut(s) 185, 747
PspN4I GGNNCC 2 cut(s) 207, 572
PspPI GGNCC 2 cut(s) 205, 472
PspPPI RGGWCCY 2 cut(s) 205, 472
PstI CTGCAG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 186
PsuI RGATCY 3 cut(s) 68, 153, 182
PteI GCGCGC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 150
RsaI GTAC 2 cut(s) 338, 572
RsaNI GTAC 2 cut(s) 337, 571
RseI CAYNNNNRTG 2 cut(s) 214, 230
SaqAI TTAA 2 cut(s) 744, 786
Sau3AI GATC 9 cut(s) 68, 114, 147, 153, 182, 298, 377, 387, 721
Sau96I GGNCC 2 cut(s) 205, 472
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 2 cut(s) 722, 869
ScrFI CCNGG 2 cut(s) 187, 749
SduI GDGCHC 1 cut(s) 494
SfaNI GCATC 3 cut(s) 592, 615, 823
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 2 cut(s) 205, 472
SmiMI CAYNNNNRTG 2 cut(s) 214, 230
SmlI CTYRAG 3 cut(s) 359, 679, 710
SmoI CTYRAG 3 cut(s) 359, 679, 710
Sse9I AATT 5 cut(s) 480, 575, 687, 783, 901
SspMI CTAG 4 cut(s) 29, 512, 990, 1032
StyD4I CCNGG 2 cut(s) 185, 747
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 4 cut(s) 89, 331, 734, 899
TaiI ACGT 2 cut(s) 266, 862
TaqI TCGA 7 cut(s) 99, 125, 150, 228, 321, 333, 693
TasI AATT 5 cut(s) 480, 575, 687, 783, 901
TatI WGTACW 1 cut(s) 336
TauI GCSGC 5 cut(s) 55, 58, 61, 139, 167
TfiI GAWTC 2 cut(s) 809, 854
Tru1I TTAA 2 cut(s) 744, 786
Tru9I TTAA 2 cut(s) 744, 786
TscAI CASTG 4 cut(s) 216, 572, 737, 820
TseFI GTSAC 2 cut(s) 714, 1013
TseI GCWGC 5 cut(s) 285, 345, 355, 637, 1035
Tsp45I GTSAC 2 cut(s) 714, 1013
TspDTI ATGAA 2 cut(s) 409, 867
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 4 cut(s) 216, 572, 737, 820
VneI GTGCAC 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 205, 472
XapI RAATTY 2 cut(s) 480, 687
XbaI TCTAGA 1 cut(s) 511
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 4 cut(s) 29, 512, 990, 1032
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.