Rh5BG117700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000331
Physical Location & Seq
Forward (+)
11059060 .. 11059422
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG117700.1

Sequence Viewer

Length: 363 bp
ATGGTCAGATCCTCAAAGCGAAACCGCCTAAACCCGGCGGAGCTCCCCAATCGAACCCGGCGAAACTGGTCGGAGCTCCCCGAGGAACTCACCTTTCAGGTCCTGTCTCGGCTCGGAGCCATCGATGTTCTGACCAGCGGTCAGAAGGTGTGTACGCAATGGCGGCGAATGTGTAAGCACCCGATGGTCTGGCGCACCATCGACATGGCCAACGATCACTTTTTCCACGAAGTTCACTACGATTTGGACAAGATGTGCCGCCACGCCGTTGATCGGAGCTTCGGTAGAGTGGAGGATATCAATGTGGAGTACTTCGGCACCGACGAATTGCTCAAGTACATCACTGATAGGTATTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

120

Amino Acids

14.39

Weight (kDa)

8.52

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 68 2.2e-10 F-box-like
F-box PF00646 23 - 65 2.1e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 5 cut(s) 25, 38, 138, 163, 259
AclWI GGATC 1 cut(s) 3
AcoI YGGCCR 1 cut(s) 207
AfaI GTAC 3 cut(s) 154, 311, 338
AfiI CCNNNNNNNGG 2 cut(s) 34, 273
AgsI TTSAA 1 cut(s) 357
AhdI GACNNNNNGTC 1 cut(s) 138
AluBI AGCT 3 cut(s) 43, 76, 279
AluI AGCT 3 cut(s) 43, 76, 279
Alw21I GWGCWC 2 cut(s) 45, 78
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 2 cut(s) 35, 58
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 2 cut(s) 45, 78
Bbv12I GWGCWC 2 cut(s) 45, 78
BccI CCATC 3 cut(s) 128, 178, 206
BceAI ACGGC 1 cut(s) 251
BcnI CCSGG 2 cut(s) 35, 58
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 2 cut(s) 164, 259
BlsI GCNGC 2 cut(s) 165, 260
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 35, 58
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 2 cut(s) 118, 319
BmrFI CCNGG 2 cut(s) 35, 58
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 35, 58
Bsa29I ATCGAT 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 273
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 34, 273
BseMI GCAATG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 71
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 317
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 45, 78
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 35, 58
BslI CCNNNNNNNGG 2 cut(s) 34, 273
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 45, 78
Bsp143I GATC 3 cut(s) 8, 214, 271
BspACI CCGC 5 cut(s) 25, 38, 138, 163, 259
BspANI GGCC 1 cut(s) 209
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 118, 319
BspPI GGATC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 8, 214, 271
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 11, 217, 274
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 8, 214, 271
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 33, 56
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 153, 310, 337
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 43, 76, 112, 119, 209, 279
CviKI_1 RGCY 6 cut(s) 43, 76, 112, 119, 209, 279
CviQI GTAC 3 cut(s) 153, 310, 337
DpnI GATC 3 cut(s) 10, 216, 273
DpnII GATC 3 cut(s) 8, 214, 271
DriI GACNNNNNGTC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 43, 76
Eco24I GRGCYC 2 cut(s) 45, 78
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 2 cut(s) 43, 76
Eco88I CYCGRG 1 cut(s) 80
EcoICRI GAGCTC 2 cut(s) 43, 76
EcoO109I RGGNCCY 1 cut(s) 100
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 45, 78
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 164, 259
FriOI GRGCYC 2 cut(s) 45, 78
Fsp4HI GCNGC 2 cut(s) 164, 259
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 164, 259
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 35, 58
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HpaII CCGG 2 cut(s) 35, 58
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 153, 235
Hpy188I TCNGA 6 cut(s) 8, 73, 116, 132, 144, 276
Hpy8I GTNNAC 2 cut(s) 153, 235
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 8, 214, 271
LmnI GCTCC 6 cut(s) 40, 48, 73, 81, 116, 276
LpnPI CCDG 7 cut(s) 48, 52, 71, 83, 116, 148, 175
MalI GATC 3 cut(s) 10, 216, 273
MboI GATC 3 cut(s) 8, 214, 271
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 45, 78
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 326, 357
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 22, 76, 286
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 2 cut(s) 35, 58
MspR9I CCNGG 2 cut(s) 35, 58
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 35, 58
NdeII GATC 3 cut(s) 8, 214, 271
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 118, 319
NmeAIII GCCGAG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 3 cut(s) 58, 120, 321
PkrI GCNGC 2 cut(s) 165, 260
PpuMI RGGWCCY 1 cut(s) 100
Psp124BI GAGCTC 2 cut(s) 45, 78
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 118, 319
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 3 cut(s) 154, 311, 338
RsaNI GTAC 3 cut(s) 153, 310, 337
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 2 cut(s) 45, 78
SatI GCNGC 2 cut(s) 164, 259
Sau3AI GATC 3 cut(s) 8, 214, 271
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 35, 58
SduI GDGCHC 2 cut(s) 45, 78
SetI ASST 7 cut(s) 45, 78, 95, 102, 150, 281, 353
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 326, 357
SsiI CCGC 5 cut(s) 25, 38, 138, 163, 259
SstI GAGCTC 2 cut(s) 45, 78
StyD4I CCNGG 2 cut(s) 33, 56
TaqI TCGA 3 cut(s) 52, 123, 201
TasI AATT 2 cut(s) 326, 357
TatI WGTACW 2 cut(s) 309, 336
TauI GCSGC 2 cut(s) 166, 261
TscAI CASTG 1 cut(s) 349
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 100
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.