Rroxscaffold_1G00061400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000331
Physical Location & Seq
Reverse (-)
83553330 .. 83554905
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061400.1

Sequence Viewer

Length: 723 bp
ATGTCGTCGATACTGGCACGTCTCGGAGCGATCAAGATCCTGCAGACTGCTCAGAAGGTTTGCACGACGTGGCGCAGAATCTGCAAGCAACCTTCGATGTGGCGCAGAATCGACATGAGTAATAAGTGGAGCTTCCCAAGCGATCAGCCTTTCGAGTTGGATAAGATGTGTCGTCACGCCATTGATCGCAGCTGTGGTAGTCTTGTTGAAATCAAACTCCAGAACTTCGGTAACAATGAACTCCTTAAGTACATCACTGATAGTGGTTACATCTCACATAAAACTGTGGAAGTGGTTGGACAAGCCTGCCCTCTCTTGAAATCATTCAAACTGAACTGTTTTAGATTTATGCTCAACAAACAGAACTTGAGGCTAAGTTTGACAACACGCGATGACTTGAGGGAAAGTTTGAGAACATGTGATGAGGAAGCACTTGCTATATCAAGAACAATGCAGGATTTACACCACCTCAAGCTTGTCGGAAATAGGCTGACTAATGATGGCTTGAGGAAAATTATTGATTCTTGTACTAATCTCGTGTCACTTGATTTGCGTTGCTGTTACCATCTTAATCTAGCAGAAGATTTGGGAAGATGTGCTGAACAAATTAAAAGCTTGCGGCTTCCCAACGATTCCGTTGACGACATGGACTATCTTTCTTCAACTACAGTTAATTGTCACATAGCACCTTATAAGGATGACTACTCAGATTTTGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

240

Amino Acids

27.66

Weight (kDa)

8.42

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 3 - 39 5.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 619
AclWI GGATC 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 2 cut(s) 251, 529
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 4 cut(s) 209, 319, 328, 663
AjiI CACGTC 2 cut(s) 20, 69
AluBI AGCT 4 cut(s) 132, 192, 475, 615
AluI AGCT 4 cut(s) 132, 192, 475, 615
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 75, 105
BauI CACGAG 1 cut(s) 536
BbvI GCAGC 1 cut(s) 201
BccI CCATC 2 cut(s) 494, 573
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 2 cut(s) 41, 666
BfrI CTTAAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 190, 620
BlsI GCNGC 2 cut(s) 191, 621
BmgBI CACGTC 2 cut(s) 20, 69
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 4 cut(s) 388, 418, 455, 526
Bsa29I ATCGAT 1 cut(s) 718
BsaBI GATNNNNATC 2 cut(s) 35, 714
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 2 cut(s) 35, 714
BseCI ATCGAT 1 cut(s) 718
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 2 cut(s) 35, 714
BseMII CTCAG 2 cut(s) 65, 720
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 718
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 30, 36, 142, 184, 715
BspACI CCGC 1 cut(s) 619
BspCNI CTCAG 2 cut(s) 64, 719
BspDI ATCGAT 1 cut(s) 718
BspFNI CGCG 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 18
BssMI GATC 5 cut(s) 30, 36, 142, 184, 715
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 3 cut(s) 286, 338, 670
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 86, 307, 617
BstDEI CTNAG 3 cut(s) 51, 374, 706
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 75, 105
BstKTI GATC 5 cut(s) 33, 39, 145, 187, 718
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 5 cut(s) 30, 36, 142, 184, 715
BstMWI GCNNNNNNNGC 2 cut(s) 81, 138
BstNSI RCATGY 1 cut(s) 420
BstSFI CTRYAG 2 cut(s) 41, 666
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 718
BsuTUI ATCGAT 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 405
BtrI CACGTC 2 cut(s) 20, 69
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 86, 307, 617
CaiI CAGNNNCTG 1 cut(s) 81
CfoI GCGC 2 cut(s) 75, 105
ClaI ATCGAT 1 cut(s) 718
Csp6I GTAC 2 cut(s) 250, 528
CviAII CATG 3 cut(s) 115, 417, 646
CviQI GTAC 2 cut(s) 250, 528
DdeI CTNAG 3 cut(s) 51, 374, 706
DpnI GATC 5 cut(s) 32, 38, 144, 186, 717
DpnII GATC 5 cut(s) 30, 36, 142, 184, 715
DraIII CACNNNGTG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 3 cut(s) 118, 420, 649
FaiI YATR 8 cut(s) 116, 279, 350, 418, 440, 647, 683, 693
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 3 cut(s) 114, 416, 645
Fnu4HI GCNGC 2 cut(s) 190, 620
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 2 cut(s) 190, 620
FspBI CTAG 1 cut(s) 575
GlaI GCGC 2 cut(s) 74, 104
GluI GCNGC 2 cut(s) 190, 620
GsuI CTGGAG 1 cut(s) 203
HhaI GCGC 2 cut(s) 75, 105
Hin1II CATG 3 cut(s) 118, 420, 649
Hin6I GCGC 2 cut(s) 73, 103
HinP1I GCGC 2 cut(s) 73, 103
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 2 cut(s) 473, 613
HinfI GANTC 4 cut(s) 78, 108, 521, 632
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 4 cut(s) 26, 54, 482, 709
Hpy188III TCNNGA 4 cut(s) 34, 220, 316, 444
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 2 cut(s) 10, 70
HpyAV CCTTC 2 cut(s) 49, 102
HpyCH4III ACNGT 3 cut(s) 286, 338, 670
HpyCH4IV ACGT 2 cut(s) 19, 68
HpyCH4V TGCA 4 cut(s) 43, 63, 84, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 138
HpyF3I CTNAG 3 cut(s) 51, 374, 706
HpySE526I ACGT 2 cut(s) 19, 68
Hsp92II CATG 3 cut(s) 118, 420, 649
HspAI GCGC 2 cut(s) 73, 103
Kzo9I GATC 5 cut(s) 30, 36, 142, 184, 715
LmnI GCTCC 2 cut(s) 26, 129
LpnPI CCDG 4 cut(s) 53, 233, 319, 440
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 19, 68
MaeIII GTNAC 6 cut(s) 173, 230, 266, 540, 560, 677
MalI GATC 5 cut(s) 32, 38, 144, 186, 717
MboI GATC 5 cut(s) 30, 36, 142, 184, 715
MboII GAAGA 3 cut(s) 593, 603, 651
MflI RGATCY 1 cut(s) 36
MluCI AATT 3 cut(s) 513, 606, 673
MmeI TCCRAC 3 cut(s) 138, 277, 460
MnlI CCTC 6 cut(s) 321, 363, 393, 418, 479, 501
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 4 cut(s) 246, 570, 609, 672
MspA1I CMGCKG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 245
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 81, 138
NdeII GATC 5 cut(s) 30, 36, 142, 184, 715
NlaIII CATG 3 cut(s) 118, 420, 649
NmuCI GTSAC 3 cut(s) 173, 540, 677
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 78, 108, 521, 632
PkrI GCNGC 2 cut(s) 191, 621
PscI ACATGT 1 cut(s) 416
PsiI TTATAA 1 cut(s) 693
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 2 cut(s) 251, 529
RsaNI GTAC 2 cut(s) 250, 528
SaqAI TTAA 4 cut(s) 246, 570, 609, 672
SatI GCNGC 2 cut(s) 190, 620
Sau3AI GATC 5 cut(s) 30, 36, 142, 184, 715
SfcI CTRYAG 2 cut(s) 41, 666
SmlI CTYRAG 5 cut(s) 245, 367, 397, 470, 505
SmoI CTYRAG 5 cut(s) 245, 367, 397, 470, 505
Sse9I AATT 3 cut(s) 513, 606, 673
SsiI CCGC 1 cut(s) 619
SspMI CTAG 1 cut(s) 575
TaaI ACNGT 3 cut(s) 286, 338, 670
TaiI ACGT 2 cut(s) 22, 71
TaqI TCGA 5 cut(s) 8, 95, 111, 153, 718
TasI AATT 3 cut(s) 513, 606, 673
TatI WGTACW 2 cut(s) 249, 527
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 4 cut(s) 78, 108, 521, 632
Tru1I TTAA 4 cut(s) 246, 570, 609, 672
Tru9I TTAA 4 cut(s) 246, 570, 609, 672
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 3 cut(s) 173, 540, 677
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 3 cut(s) 173, 540, 677
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 245
XceI RCATGY 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.