Rroxscaffold_1G00061160

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000586
Physical Location & Seq
Reverse (-)
83378181 .. 83384282
6102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061160.1

Sequence Viewer

Length: 936 bp
ATGATTGATTCCAAAAGAAGAGCATTGCAAGAAATAATTTTGTGCAAGGAGCTTTCGAGTAGAATCAGACGCCTGCGACTTGTGTGTTCTTATTACATATCAGATGAGGGATTGATTGAAGTTGCATCAAAACTTCCGCTGTTAGAGGACCTTGACATCTCATTATGCGGAAATTTGGCTCATAAGCCTGTGAAAGTGCTTGGGCACTCTTGCCCTCTTTTGAAATCATTCAAATTGAATAAACAATGGCACAAATATTCAGACAACTTCTTTGAAGAGATTATTGACGATGAAGGTCCTTGGAGTAAAGATGACGATGCACTTGCTATTGCAGGAACGATGCATGGTTTATACCACTTGCAGCTTTTCGGGAATCAGCTGACCAATGATGGCTTACGGGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTAGATCTTCGCTATTGTTTCAACCTTAATCTGGAGGGAGATTTGGGAAGAAGATGCACTAAACAAATTAAAAGATTGTTGCTTCCCAAAGATTCAATTGCTGGATATAGATTTCTGCCTTCTACCGATTGGCAACCTCCCAGATCACCTAAATATATTATTGATAGGCTTTTCTCCTGGGGAGAGAAGGAGGAGAAAGAGGCTTGTGGAGGATCTGCGGCGAGCTTCTGCCGAAAAGATGCTTGCCGAAACTCTCTCGGCGGCGCATCAACTCCGCTTCCACTTGCCCTGTTCTTTATCCGCCTCATCGAAACCTCCAAGGCTTTGTCACCTAGCTCGGCCATGACTCCCGGCTCCGACCACCCTCTCGACCGTAAGTTCTCTCGTGTTTTCGGCGAACGAGCTCCCGGTGATGAACTTCGGGAAGTTGATGTGATATCGCTATTGGATTCGACAACAATGGTGATCACCTTGCCATTGGAGATCGAGGTGGCCGCTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

311

Amino Acids

34.84

Weight (kDa)

6.2

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 137, 168, 650, 693, 707, 733, 927
AclWI GGATC 1 cut(s) 652
AcoI YGGCCR 2 cut(s) 771, 924
AcsI RAATTY 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 7 cut(s) 119, 223, 232, 238, 275, 454, 528
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 6 cut(s) 52, 364, 379, 657, 768, 836
AluI AGCT 6 cut(s) 52, 364, 379, 657, 768, 836
Alw21I GWGCWC 1 cut(s) 838
AlwI GGATC 1 cut(s) 652
AoxI GGCC 2 cut(s) 771, 924
ApeKI GCWGC 2 cut(s) 361, 929
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 148, 296
AsuC2I CCSGG 2 cut(s) 783, 840
AsuHPI GGTGA 5 cut(s) 570, 753, 854, 892, 907
AvaII GGWCC 2 cut(s) 148, 296
BaeGI GKGCMC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 838
BauI CACGAG 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 2 cut(s) 373, 916
BccI CCATC 2 cut(s) 383, 404
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 610
BclI TGATCA 1 cut(s) 897
BcnI CCSGG 2 cut(s) 783, 840
BfaI CTAG 2 cut(s) 434, 765
BglII AGATCT 1 cut(s) 436
BisI GCNGC 5 cut(s) 362, 651, 694, 927, 930
BlsI GCNGC 5 cut(s) 363, 652, 695, 928, 931
Bme1390I CCNGG 3 cut(s) 610, 783, 840
Bme18I GGWCC 2 cut(s) 148, 296
BmgT120I GGNCC 2 cut(s) 148, 296
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 3 cut(s) 610, 783, 840
BmsI GCATC 6 cut(s) 134, 307, 330, 476, 661, 707
BpmI CTGGAG 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 2 cut(s) 783, 840
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 299, 609, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 3 cut(s) 299, 609, 750
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 2 cut(s) 373, 916
Bsh1285I CGRYCG 1 cut(s) 805
BshFI GGCC 2 cut(s) 773, 926
BsiEI CGRYCG 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 2 cut(s) 783, 840
BslI CCNNNNNNNGG 1 cut(s) 463
BsnI GGCC 2 cut(s) 773, 926
Bsp1286I GDGCHC 2 cut(s) 207, 838
Bsp143I GATC 5 cut(s) 436, 575, 644, 897, 915
BspACI CCGC 7 cut(s) 137, 168, 650, 693, 707, 733, 927
BspANI GGCC 2 cut(s) 773, 926
BspLI GGNNCC 1 cut(s) 787
BspPI GGATC 1 cut(s) 652
BspQI GCTCTTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 299, 609, 750
BssMI GATC 5 cut(s) 436, 575, 644, 897, 915
BssNI GRCGYC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 2 cut(s) 299, 750
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 806
Bst6I CTCTTC 2 cut(s) 13, 270
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 74, 655, 676
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 5 cut(s) 439, 578, 647, 900, 918
BstMBI GATC 5 cut(s) 436, 575, 644, 897, 915
BstMCI CGRYCG 1 cut(s) 805
BstNI CCWGG 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 608, 781, 838
BstSLI GKGCMC 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 373, 916
BstX2I RGATCY 2 cut(s) 436, 644
BstYI RGATCY 2 cut(s) 436, 644
BsuRI GGCC 2 cut(s) 773, 926
Cac8I GCNNGC 3 cut(s) 74, 655, 676
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 148, 296
CseI GACGC 1 cut(s) 78
CviAII CATG 2 cut(s) 344, 775
DpnI GATC 5 cut(s) 438, 577, 646, 899, 917
DpnII GATC 5 cut(s) 436, 575, 644, 897, 915
EaeI YGGCCR 2 cut(s) 771, 924
Eam1104I CTCTTC 2 cut(s) 13, 270
EarI CTCTTC 2 cut(s) 13, 270
EciI GGCGGA 1 cut(s) 722
Ecl136II GAGCTC 1 cut(s) 836
Eco130I CCWWGG 2 cut(s) 299, 750
Eco24I GRGCYC 1 cut(s) 838
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 148, 296
Eco53kI GAGCTC 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 836
EcoO109I RGGNCCY 2 cut(s) 148, 296
EcoRII CCWGG 1 cut(s) 608
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 2 cut(s) 299, 750
EcoT22I ATGCAT 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 2 cut(s) 299, 750
FaeI CATG 2 cut(s) 347, 778
FaiI YATR 8 cut(s) 98, 166, 183, 345, 352, 540, 588, 776
FatI CATG 2 cut(s) 343, 774
FbaI TGATCA 1 cut(s) 897
Fnu4HI GCNGC 5 cut(s) 362, 651, 694, 927, 930
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 5 cut(s) 362, 651, 694, 927, 930
FspBI CTAG 2 cut(s) 434, 765
GlaI GCGC 1 cut(s) 697
GluI GCNGC 5 cut(s) 362, 651, 694, 927, 930
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 773, 926
HapII CCGG 2 cut(s) 783, 840
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 2 cut(s) 347, 778
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HinfI GANTC 7 cut(s) 8, 63, 373, 428, 524, 778, 881
HpaII CCGG 2 cut(s) 783, 840
HphI GGTGA 5 cut(s) 570, 753, 854, 892, 907
Hpy188I TCNGA 4 cut(s) 68, 103, 262, 790
Hpy188III TCNNGA 6 cut(s) 370, 407, 425, 464, 800, 854
HpyAV CCTTC 3 cut(s) 287, 561, 613
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4V TGCA 8 cut(s) 28, 45, 125, 320, 332, 343, 361, 489
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 2 cut(s) 347, 778
HspAI GCGC 1 cut(s) 696
Ksp22I TGATCA 1 cut(s) 897
Kzo9I GATC 5 cut(s) 436, 575, 644, 897, 915
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 49, 791, 841
Lsp1109I GCAGC 2 cut(s) 373, 916
LweI GCATC 6 cut(s) 134, 307, 330, 476, 661, 707
MaeI CTAG 2 cut(s) 434, 765
MaeIII GTNAC 2 cut(s) 429, 759
MalI GATC 5 cut(s) 438, 577, 646, 899, 917
MboI GATC 5 cut(s) 436, 575, 644, 897, 915
MboII GAAGA 5 cut(s) 30, 287, 431, 492, 495
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 2 cut(s) 436, 644
MhlI GDGCHC 2 cut(s) 207, 838
MluCI AATT 6 cut(s) 36, 172, 233, 402, 498, 528
MlyI GAGTC 2 cut(s) 437, 772
MmeI TCCRAC 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 459, 501
MspA1I CMGCKG 3 cut(s) 139, 379, 929
MspI CCGG 2 cut(s) 783, 840
MspR9I CCNGG 3 cut(s) 610, 783, 840
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 610
NciI CCSGG 2 cut(s) 783, 840
NdeII GATC 5 cut(s) 436, 575, 644, 897, 915
NlaIII CATG 2 cut(s) 347, 778
NlaIV GGNNCC 1 cut(s) 787
NmeAIII GCCGAG 2 cut(s) 669, 749
NmuCI GTSAC 2 cut(s) 429, 759
NsiI ATGCAT 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 5 cut(s) 8, 63, 373, 524, 881
PkrI GCNGC 5 cut(s) 363, 652, 695, 928, 931
PleI GAGTC 2 cut(s) 436, 772
PpsI GAGTC 2 cut(s) 436, 772
PpuMI RGGWCCY 2 cut(s) 148, 296
Psp124BI GAGCTC 1 cut(s) 838
Psp5II RGGWCCY 2 cut(s) 148, 296
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 2 cut(s) 148, 296
PspPPI RGGWCCY 2 cut(s) 148, 296
PsuI RGATCY 2 cut(s) 436, 644
PvuII CAGCTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 838
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 459, 501
SatI GCNGC 5 cut(s) 362, 651, 694, 927, 930
Sau3AI GATC 5 cut(s) 436, 575, 644, 897, 915
Sau96I GGNCC 2 cut(s) 148, 296
SchI GAGTC 2 cut(s) 437, 772
ScrFI CCNGG 3 cut(s) 610, 783, 840
SduI GDGCHC 2 cut(s) 207, 838
SfaNI GCATC 6 cut(s) 134, 307, 330, 476, 661, 707
SinI GGWCC 2 cut(s) 148, 296
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 6 cut(s) 36, 172, 233, 402, 498, 528
SsiI CCGC 7 cut(s) 137, 168, 650, 693, 707, 733, 927
SspI AATATT 1 cut(s) 257
SspMI CTAG 2 cut(s) 434, 765
SstI GAGCTC 1 cut(s) 838
StyD4I CCNGG 3 cut(s) 608, 781, 838
StyI CCWWGG 2 cut(s) 299, 750
TaaI ACNGT 1 cut(s) 806
TaqI TCGA 5 cut(s) 56, 741, 801, 884, 918
TasI AATT 6 cut(s) 36, 172, 233, 402, 498, 528
TauI GCSGC 3 cut(s) 653, 696, 929
TfiI GAWTC 5 cut(s) 8, 63, 373, 524, 881
Tru1I TTAA 2 cut(s) 459, 501
Tru9I TTAA 2 cut(s) 459, 501
TseFI GTSAC 2 cut(s) 429, 759
TseI GCWGC 2 cut(s) 361, 929
Tsp45I GTSAC 2 cut(s) 429, 759
TspDTI ATGAA 2 cut(s) 306, 861
VpaK11BI GGWCC 2 cut(s) 148, 296
XapI RAATTY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 434, 765
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.