RchiOBHm_Chr5g0015281

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000586
Physical Location & Seq
Forward (+)
10569531 .. 10571075
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29570

Sequence Viewer

Length: 774 bp
ATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTGGCTCACTTGATCTGCACCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGCGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGCTTATTGCTTTAAATGGACAGAACTCCCAGACGATGTTACAGCGTTGATACTGTCACAGCTGGGAGGGATTGACATCCTCACCTCCGCTCAGAAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCGCTGTTGGAGGACCTTAATTGACCTTTCAATACATGAGGATATCTCACATGAATCTCTAGCATTGGTTGGACGCTCATGCCCTCTTCTGAAATCATTGAAATTTAACAAAAGGTGGTTTGATGAAGGCCGATATAATAACCGGTACAAGCTTGAGCGGAATGACTATGCACTTGCTATAGCAGGGACGATGCATGCTTTACACCACCTCATGCTTTTTAGGAATACACTGACTAATAAAGGTTTGTGTGCCATTCTTGATGGTTGTCCTCATCTTGAGCCGCTAGATATGCGCCAGTGTTTTAATCTTAGATTGGGAGGAAAGGTGGGAAGAAGATGCGCTGAACAAATTAAAGAACTGCGGCTTCCCCATGATTCTGTCGATGACATTGACCCATCATATCAATTTGTCTTTGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

257

Amino Acids

29.77

Weight (kDa)

6.45

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 311, 508
AciI CCGC 6 cut(s) 172, 309, 352, 508, 632, 712
AcsI RAATTY 3 cut(s) 203, 346, 452
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 492
AgsI TTSAA 3 cut(s) 344, 381, 451
AluBI AGCT 4 cut(s) 25, 224, 283, 502
AluI AGCT 4 cut(s) 25, 224, 283, 502
AoxI GGCC 1 cut(s) 478
ApoI RAATTY 3 cut(s) 203, 346, 452
AsiGI ACCGGT 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 645, 692
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 363
BccI CCATC 3 cut(s) 44, 605, 754
BclI TGATCA 1 cut(s) 766
BfaI CTAG 3 cut(s) 213, 410, 635
BfmI CTRYAG 1 cut(s) 528
BglII AGATCT 1 cut(s) 215
BisI GCNGC 3 cut(s) 173, 632, 713
BlsI GCNGC 3 cut(s) 174, 633, 714
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 363
BmsI GCATC 2 cut(s) 531, 677
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 5
BpuEI CTTGAG 3 cut(s) 76, 524, 647
BsaBI GATNNNNATC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 3 cut(s) 33, 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 296
BseGI GGATG 1 cut(s) 297
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 183, 326
BseNI ACTGG 1 cut(s) 646
BseYI CCCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 480
BshTI ACCGGT 1 cut(s) 492
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 1 cut(s) 480
Bsp143I GATC 4 cut(s) 82, 97, 215, 766
BspACI CCGC 6 cut(s) 172, 309, 352, 508, 632, 712
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 2 cut(s) 184, 325
BsrBI CCGCTC 2 cut(s) 311, 508
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 1 cut(s) 646
BssAI RCCGGY 1 cut(s) 492
BssMI GATC 4 cut(s) 82, 97, 215, 766
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 192, 312, 659
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 2 cut(s) 645, 692
BstKTI GATC 4 cut(s) 85, 100, 218, 769
BstMBI GATC 4 cut(s) 82, 97, 215, 766
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNSI RCATGY 1 cut(s) 548
BstSFI CTRYAG 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 189, 578, 653
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 2 cut(s) 645, 692
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 496
CspAI ACCGGT 1 cut(s) 492
CviAII CATG 8 cut(s) 5, 182, 386, 401, 429, 545, 562, 722
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 192, 312, 659
DpnI GATC 4 cut(s) 84, 99, 217, 768
DpnII GATC 4 cut(s) 82, 97, 215, 766
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 363
EcoRV GATATC 1 cut(s) 394
EcoT22I ATGCAT 2 cut(s) 6, 546
FaeI CATG 8 cut(s) 8, 185, 389, 404, 432, 548, 565, 725
FaqI GGGAC 1 cut(s) 550
FatI CATG 8 cut(s) 4, 181, 385, 400, 428, 544, 561, 721
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 173, 632, 713
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 173, 632, 713
FspBI CTAG 3 cut(s) 213, 410, 635
GlaI GCGC 2 cut(s) 644, 691
GluI GCNGC 3 cut(s) 173, 632, 713
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 1 cut(s) 480
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 432
HhaI GCGC 2 cut(s) 645, 692
Hin1II CATG 8 cut(s) 8, 185, 389, 404, 432, 548, 565, 725
Hin6I GCGC 2 cut(s) 643, 690
HinP1I GCGC 2 cut(s) 643, 690
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 222, 500
HinfI GANTC 3 cut(s) 185, 404, 725
HpaII CCGG 1 cut(s) 493
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 11, 42
Hpy188I TCNGA 3 cut(s) 220, 315, 441
Hpy188III TCNNGA 5 cut(s) 68, 80, 331, 608, 626
Hpy8I GTNNAC 2 cut(s) 11, 42
HpyAV CCTTC 2 cut(s) 316, 470
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 4, 103, 521, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 3 cut(s) 192, 312, 659
Hsp92II CATG 8 cut(s) 8, 185, 389, 404, 432, 548, 565, 725
HspAI GCGC 2 cut(s) 643, 690
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 4 cut(s) 82, 97, 215, 766
LpnPI CCDG 7 cut(s) 35, 93, 264, 269, 506, 519, 659
LweI GCATC 2 cut(s) 531, 677
MaeI CTAG 3 cut(s) 213, 410, 635
MaeIII GTNAC 2 cut(s) 259, 276
MalI GATC 4 cut(s) 84, 99, 217, 768
MbiI CCGCTC 2 cut(s) 311, 508
MboI GATC 4 cut(s) 82, 97, 215, 766
MboII GAAGA 5 cut(s) 153, 328, 428, 693, 696
MflI RGATCY 1 cut(s) 215
MluCI AATT 8 cut(s) 159, 167, 203, 346, 369, 452, 699, 755
MmeI TCCRAC 2 cut(s) 338, 400
Mph1103I ATGCAT 2 cut(s) 6, 546
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 6 cut(s) 120, 234, 368, 456, 654, 702
MspA1I CMGCKG 2 cut(s) 283, 354
MspI CCGG 1 cut(s) 493
MwoI GCNNNNNNNGC 1 cut(s) 640
NdeII GATC 4 cut(s) 82, 97, 215, 766
NlaIII CATG 8 cut(s) 8, 185, 389, 404, 432, 548, 565, 725
NmuCI GTSAC 1 cut(s) 276
NsiI ATGCAT 2 cut(s) 6, 546
NspI RCATGY 1 cut(s) 548
PaeI GCATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 185, 404, 725
PinAI ACCGGT 1 cut(s) 492
PkrI GCNGC 3 cut(s) 174, 633, 714
PpuMI RGGWCCY 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 363
PspPPI RGGWCCY 1 cut(s) 363
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SaqAI TTAA 6 cut(s) 120, 234, 368, 456, 654, 702
SatI GCNGC 3 cut(s) 173, 632, 713
Sau3AI GATC 4 cut(s) 82, 97, 215, 766
Sau96I GGNCC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 531, 677
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 55, 503, 626
SmoI CTYRAG 3 cut(s) 55, 503, 626
SphI GCATGC 1 cut(s) 548
Sse9I AATT 8 cut(s) 159, 167, 203, 346, 369, 452, 699, 755
SsiI CCGC 6 cut(s) 172, 309, 352, 508, 632, 712
SspMI CTAG 3 cut(s) 213, 410, 635
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 732
TasI AATT 8 cut(s) 159, 167, 203, 346, 369, 452, 699, 755
TauI GCSGC 3 cut(s) 175, 634, 715
TfiI GAWTC 3 cut(s) 185, 404, 725
Tru1I TTAA 6 cut(s) 120, 234, 368, 456, 654, 702
Tru9I TTAA 6 cut(s) 120, 234, 368, 456, 654, 702
TscAI CASTG 3 cut(s) 196, 585, 653
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 5 cut(s) 103, 168, 335, 417, 489
TspRI CASTG 3 cut(s) 196, 585, 653
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 3 cut(s) 203, 346, 452
XceI RCATGY 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 213, 410, 635
Zsp2I ATGCAT 2 cut(s) 6, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.