Rw5G010360

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000586
Physical Location & Seq
Forward (+)
11336975 .. 11338523
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010360.1

Sequence Viewer

Length: 897 bp
ATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTAGCTCACTTGATCTGCGCCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGCTTATTGCTTTAAATGGACAGAACTCCCAGACGATGTTACAGCATTGATACTGTCACAGCTGGGAGGGATTGACATCCTCACCTCCGCTCAGAAGGACCCGCTTATGTGGCGCACCATTGACATGTGCAATAATTTTGATATTAACAACTACAAGCCCTTCTTCTTCCATGAGTTGTGCGAACATGCAATTGAACGTAGCTGTGTCACTTCTTTTAGAATAACAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCTCTGTTGGAGGACCTTGACCTTTCAATACATGAGGATATCTCACATGAAACTCTAGCATTGGTTGGACGCTCATGCCCTCTTCTGAAATCATTGAAATTTAACAAAAGGTGGTTTGATGAAGGCCGATATAATAACCGGTACAAGCTTGAGCGGAATGACTGTGCACTCGCTATAGCAGGGACGATGCATGGTTTACACCACCTCATGCTTTTTAGGAATACACTGACTAATAAAGGTTTGTGTGCCATTCTTGATGGTTGTCCTCATCTTGAGTCGCTAGATATGTGCCAGTGTTTTAATCTTAGATTGGGGGGAAAGGTGGGAAGAAGATGCGCTGAACAAATTAAAGAACTGCGGCTTCCCCATGAATCTGTCGATGACATTGACCCATCATATCAATTTGTCTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

298

Amino Acids

34.43

Weight (kDa)

5.54

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 311, 634
AciI CCGC 4 cut(s) 309, 323, 634, 838
AcsI RAATTY 3 cut(s) 203, 476, 578
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 618
AgsI TTSAA 4 cut(s) 416, 474, 507, 577
AluBI AGCT 6 cut(s) 25, 90, 224, 283, 423, 628
AluI AGCT 6 cut(s) 25, 90, 224, 283, 423, 628
Alw21I GWGCWC 1 cut(s) 649
Alw44I GTGCAC 1 cut(s) 645
AoxI GGCC 1 cut(s) 604
ApaLI GTGCAC 1 cut(s) 645
ApoI RAATTY 3 cut(s) 203, 476, 578
AsiGI ACCGGT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 3 cut(s) 105, 336, 818
AspS9I GGNCC 2 cut(s) 319, 493
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 2 cut(s) 319, 493
BaeGI GKGCMC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 649
BccI CCATC 3 cut(s) 44, 731, 880
BfaI CTAG 3 cut(s) 213, 536, 761
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 839
BlsI GCNGC 1 cut(s) 840
Bme18I GGWCC 2 cut(s) 319, 493
BmgT120I GGNCC 2 cut(s) 319, 493
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 2 cut(s) 657, 803
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 1 cut(s) 5
BpuEI CTTGAG 3 cut(s) 76, 650, 773
BsaBI GATNNNNATC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 296
BseGI GGATG 1 cut(s) 297
BseJI GATNNNNATC 1 cut(s) 296
BseMII CTCAG 2 cut(s) 183, 326
BseNI ACTGG 1 cut(s) 772
BseSI GKGCMC 1 cut(s) 649
BseYI CCCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 606
BshTI ACCGGT 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 1 cut(s) 619
BslFI GGGAC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 3 cut(s) 82, 97, 215
BspACI CCGC 4 cut(s) 309, 323, 634, 838
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 2 cut(s) 184, 325
BspLI GGNNCC 1 cut(s) 321
BsrBI CCGCTC 2 cut(s) 311, 634
BsrFI RCCGGY 1 cut(s) 618
BsrI ACTGG 1 cut(s) 772
BssAI RCCGGY 1 cut(s) 618
BssMI GATC 3 cut(s) 82, 97, 215
Bst4CI ACNGT 2 cut(s) 276, 644
Bst6I CTCTTC 1 cut(s) 567
BstDEI CTNAG 4 cut(s) 86, 192, 312, 785
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 3 cut(s) 105, 336, 818
BstKTI GATC 3 cut(s) 85, 100, 218
BstMBI GATC 3 cut(s) 82, 97, 215
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 2 cut(s) 349, 410
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 649
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 1 cut(s) 606
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 189, 704, 779
CfoI GCGC 3 cut(s) 105, 336, 818
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 2 cut(s) 319, 493
CseI GACGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 622
CspAI ACCGGT 1 cut(s) 618
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 4 cut(s) 86, 192, 312, 785
DpnI GATC 3 cut(s) 84, 99, 217
DpnII GATC 3 cut(s) 82, 97, 215
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 319, 493
Eco57I CTGAAG 1 cut(s) 240
EcoO109I RGGNCCY 2 cut(s) 319, 493
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 6, 672
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 676
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 839
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 839
FspBI CTAG 3 cut(s) 213, 536, 761
GlaI GCGC 3 cut(s) 104, 335, 817
GluI GCNGC 1 cut(s) 839
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 619
HgaI GACGC 1 cut(s) 558
HhaI GCGC 3 cut(s) 105, 336, 818
Hin6I GCGC 3 cut(s) 103, 334, 816
HinP1I GCGC 3 cut(s) 103, 334, 816
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 222, 626
HinfI GANTC 3 cut(s) 185, 755, 851
HpaII CCGG 1 cut(s) 619
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 4 cut(s) 11, 42, 647, 677
Hpy188I TCNGA 3 cut(s) 220, 315, 567
Hpy188III TCNNGA 5 cut(s) 68, 80, 461, 734, 752
Hpy8I GTNNAC 4 cut(s) 11, 42, 647, 677
HpyAV CCTTC 4 cut(s) 310, 391, 446, 596
HpyCH4III ACNGT 2 cut(s) 276, 644
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 5 cut(s) 4, 351, 410, 647, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 4 cut(s) 86, 192, 312, 785
HpySE526I ACGT 1 cut(s) 418
HspAI GCGC 3 cut(s) 103, 334, 816
Kzo9I GATC 3 cut(s) 82, 97, 215
LpnPI CCDG 7 cut(s) 35, 93, 264, 269, 632, 645, 785
LweI GCATC 2 cut(s) 657, 803
MaeI CTAG 3 cut(s) 213, 536, 761
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 259, 276, 427
MalI GATC 3 cut(s) 84, 99, 217
MbiI CCGCTC 2 cut(s) 311, 634
MboI GATC 3 cut(s) 82, 97, 215
MboII GAAGA 6 cut(s) 153, 376, 379, 554, 819, 822
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 9 cut(s) 159, 167, 203, 355, 411, 476, 578, 825, 881
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 2 cut(s) 468, 526
Mph1103I ATGCAT 2 cut(s) 6, 672
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 6 cut(s) 120, 234, 366, 582, 780, 828
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 619
MunI CAATTG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 3 cut(s) 82, 97, 215
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 276, 427
NsiI ATGCAT 2 cut(s) 6, 672
NspI RCATGY 2 cut(s) 349, 410
PciI ACATGT 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 185, 851
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 1 cut(s) 840
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
PpuMI RGGWCCY 2 cut(s) 319, 493
PscI ACATGT 1 cut(s) 345
Psp5II RGGWCCY 2 cut(s) 319, 493
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 319, 493
PspPPI RGGWCCY 2 cut(s) 319, 493
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 6 cut(s) 120, 234, 366, 582, 780, 828
SatI GCNGC 1 cut(s) 839
Sau3AI GATC 3 cut(s) 82, 97, 215
Sau96I GGNCC 2 cut(s) 319, 493
SchI GAGTC 1 cut(s) 764
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 657, 803
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 2 cut(s) 319, 493
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 55, 629, 752
SmoI CTYRAG 3 cut(s) 55, 629, 752
Sse9I AATT 9 cut(s) 159, 167, 203, 355, 411, 476, 578, 825, 881
SsiI CCGC 4 cut(s) 309, 323, 634, 838
SspMI CTAG 3 cut(s) 213, 536, 761
TaaI ACNGT 2 cut(s) 276, 644
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 858
TasI AATT 9 cut(s) 159, 167, 203, 355, 411, 476, 578, 825, 881
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 2 cut(s) 185, 851
Tru1I TTAA 6 cut(s) 120, 234, 366, 582, 780, 828
Tru9I TTAA 6 cut(s) 120, 234, 366, 582, 780, 828
TscAI CASTG 3 cut(s) 196, 711, 779
TseFI GTSAC 2 cut(s) 276, 427
Tsp45I GTSAC 2 cut(s) 276, 427
TspDTI ATGAA 6 cut(s) 103, 168, 465, 543, 615, 864
TspRI CASTG 3 cut(s) 196, 711, 779
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 2 cut(s) 319, 493
XapI RAATTY 3 cut(s) 203, 476, 578
XceI RCATGY 2 cut(s) 349, 410
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 213, 536, 761
Zsp2I ATGCAT 2 cut(s) 6, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.