RLG00000032187

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000586
Physical Location & Seq
Reverse (-)
11899037 .. 11902345
3309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032187

Sequence Viewer

Length: 999 bp
ATGGCCGAATCCGGCCGATGCCGAAGGCGAAATTGGACGGAACTCCCGGATGAGTTAACGGCGGCGATTCTTTCACTGCTGGGAGCAGTGGAGATCTTTGAGAGGGCTCAAAAAGTTTGCATGAAGTGGCGTAAAATCTCCAAGGACCCTCTCTTCTGGCGCAAAATCAACATGCGCAACGATGGTGATCTTGATGACTGTGACTACGAGTCCATGTTCAGCCACATCGTTTTCCGGAGCTCCGGTAATGTCGTCGATATCAATATCGAGCACTTCGGCACCGACGAACTACTCACCTTTATCACCAGAAGATTCTCTGATGATGAGTCTGACTTTGATGATAGTGATGACGATTATGCACATGCTCCTTTTGTTCATGCTCCTGTTGCTCATGCTCGTGTTAGAAAAGATGACAATGTAGATGCACTTGCTATAGCAGGAACGATGCAAGATTTACACCACCTCCAGCTTTATGGGAATAAGCTTACAAATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTGGAAACAAGATGTGCTGAACGGTTTAAAAGGTTGTGGCTTCCCCATGATTCCATAGAGGGAAAAGAATTTACCGCTAGATCAGATGGGTACTGCTTTAAATGGGTTGAACTCCCAGATGACATTACTATGTCGATACTGTCACTGCTTGGAACAATTGATATCCTGGAGAGTGCTCAGACGGTATGCATGAAGTGGCGCAAAATCTGCAAGGAACTGAAGTGGAACACCATAGACATGCGCAATGATAGTGCTCCTGACATTACCTTCGACTTAGAGAAGATGTGCCGCCATGTTGTGGATCTTAGTTGTGGTAATTTGGTTGATGTGAATGTTGAGGACTTTATCTCGGATGAGCTCCTAGAGAACGATGCATGGTTTATACCACCTGCAGCTTTTCGGGAATCAGCTGACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

333

Amino Acids

38.31

Weight (kDa)

4.77

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 58 1.1e-08 F-box-like
F-box-like PF12937 228 - 273 1.2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 976
Acc16I TGCGCA 2 cut(s) 176, 821
Acc36I ACCTGC 1 cut(s) 976
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 877
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 3 cut(s) 62, 654, 868
AclWI GGATC 1 cut(s) 888
AcoI YGGCCR 2 cut(s) 3, 13
AcsI RAATTY 2 cut(s) 507, 647
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 1 cut(s) 877
AgsI TTSAA 2 cut(s) 559, 689
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 744
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 6 cut(s) 240, 469, 484, 937, 974, 989
AluI AGCT 6 cut(s) 240, 469, 484, 937, 974, 989
Alw21I GWGCWC 5 cut(s) 242, 273, 757, 835, 939
AlwI GGATC 1 cut(s) 888
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 2 cut(s) 3, 13
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 507, 647
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AspLEI GCGC 5 cut(s) 162, 177, 549, 780, 822
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 197, 286, 295
AvaII GGWCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 3 cut(s) 109, 242, 939
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 5 cut(s) 242, 273, 757, 835, 939
BbvI GCAGC 1 cut(s) 983
BccI CCATC 3 cut(s) 176, 488, 659
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 746
BcnI CCSGG 1 cut(s) 47
BfaI CTAG 2 cut(s) 657, 941
BfmI CTRYAG 2 cut(s) 432, 969
BfuAI ACCTGC 1 cut(s) 976
BglII AGATCT 1 cut(s) 93
BisI GCNGC 3 cut(s) 63, 868, 972
BlsI GCNGC 3 cut(s) 64, 869, 973
Bme1390I CCNGG 2 cut(s) 47, 746
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 147, 280
BmrFI CCNGG 2 cut(s) 47, 746
BmsI GCATC 4 cut(s) 8, 412, 435, 940
BpmI CTGGAG 2 cut(s) 449, 767
BpuEI CTTGAG 2 cut(s) 520, 551
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 234, 242
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse3DI GCAATG 1 cut(s) 829
Bse8I GATNNNNATC 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 234
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 55, 937
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 770
BseX3I CGGCCG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 983
BseYI CCCAGC 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 5, 15
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 5 cut(s) 242, 273, 757, 835, 939
BsiSI CCGG 4 cut(s) 12, 47, 235, 243
BslI CCNNNNNNNGG 1 cut(s) 877
BsnI GGCC 2 cut(s) 5, 15
Bsp1286I GDGCHC 6 cut(s) 109, 242, 273, 757, 835, 939
Bsp13I TCCGGA 1 cut(s) 234
Bsp143I GATC 5 cut(s) 93, 187, 541, 659, 880
BspACI CCGC 3 cut(s) 62, 654, 868
BspANI GGCC 2 cut(s) 5, 15
BspCNI CTCAG 1 cut(s) 769
BspEI TCCGGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 147, 280
BspMAI CTGCAG 1 cut(s) 973
BspMI ACCTGC 1 cut(s) 976
BspPI GGATC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 829
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 5 cut(s) 93, 187, 541, 659, 880
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 200, 603, 720, 763
Bst6I CTCTTC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 786
BstDEI CTNAG 3 cut(s) 756, 853, 884
BstF5I GGATG 2 cut(s) 55, 937
BstHHI GCGC 5 cut(s) 162, 177, 549, 780, 822
BstKTI GATC 5 cut(s) 96, 190, 544, 662, 883
BstMBI GATC 5 cut(s) 93, 187, 541, 659, 880
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 386, 786
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 3 cut(s) 175, 365, 820
BstSCI CCNGG 2 cut(s) 45, 744
BstSFI CTRYAG 2 cut(s) 432, 969
BstV1I GCAGC 1 cut(s) 983
BstX2I RGATCY 2 cut(s) 93, 880
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 2 cut(s) 93, 880
BstZI CGGCCG 1 cut(s) 13
BsuRI GGCC 2 cut(s) 5, 15
BtsCI GGATG 2 cut(s) 55, 937
BtsI GCAGTG 3 cut(s) 74, 93, 722
BtsIMutI CAGTG 3 cut(s) 74, 93, 722
BveI ACCTGC 1 cut(s) 976
CfoI GCGC 5 cut(s) 162, 177, 549, 780, 822
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 670
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 3 cut(s) 756, 853, 884
DpnI GATC 5 cut(s) 95, 189, 543, 661, 882
DpnII GATC 5 cut(s) 93, 187, 541, 659, 880
DraI TTTAAA 2 cut(s) 607, 679
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 2 cut(s) 3, 13
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 158
Ecl136II GAGCTC 2 cut(s) 240, 937
EclXI CGGCCG 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 3 cut(s) 109, 242, 939
Eco32I GATATC 2 cut(s) 259, 742
Eco47I GGWCC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 13
Eco53kI GAGCTC 2 cut(s) 240, 937
Eco57I CTGAAG 1 cut(s) 818
EcoICRI GAGCTC 2 cut(s) 240, 937
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 744
EcoRV GATATC 2 cut(s) 259, 742
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 2 cut(s) 770, 955
EcoT38I GRGCYC 3 cut(s) 109, 242, 939
ErhI CCWWGG 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 63, 868, 972
FokI GGATG 2 cut(s) 62, 944
FriOI GRGCYC 3 cut(s) 109, 242, 939
Fsp4HI GCNGC 3 cut(s) 63, 868, 972
FspBI CTAG 2 cut(s) 657, 941
FspI TGCGCA 2 cut(s) 176, 821
GlaI GCGC 5 cut(s) 161, 176, 548, 779, 821
GluI GCNGC 3 cut(s) 63, 868, 972
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 2 cut(s) 449, 767
HaeIII GGCC 2 cut(s) 5, 15
HapII CCGG 4 cut(s) 12, 47, 235, 243
HhaI GCGC 5 cut(s) 162, 177, 549, 780, 822
Hin6I GCGC 5 cut(s) 160, 175, 547, 778, 820
HinP1I GCGC 5 cut(s) 160, 175, 547, 778, 820
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 8 cut(s) 8, 67, 209, 312, 326, 533, 629, 983
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 4 cut(s) 12, 47, 235, 243
HphI GGTGA 3 cut(s) 197, 286, 295
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 5 cut(s) 319, 331, 664, 759, 931
Hpy188III TCNNGA 6 cut(s) 191, 235, 512, 530, 836, 980
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 257, 287
HpyAV CCTTC 2 cut(s) 18, 856
HpyCH4III ACNGT 4 cut(s) 200, 603, 720, 763
HpyCH4V TGCA 8 cut(s) 120, 359, 425, 448, 768, 789, 953, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 786
HpyF3I CTNAG 3 cut(s) 756, 853, 884
HspAI GCGC 5 cut(s) 160, 175, 547, 778, 820
Kpn2I TCCGGA 1 cut(s) 234
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 93, 187, 541, 659, 880
LmnI GCTCC 7 cut(s) 83, 237, 245, 370, 385, 838, 942
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 4 cut(s) 8, 412, 435, 940
MaeI CTAG 2 cut(s) 657, 941
MaeIII GTNAC 3 cut(s) 200, 534, 720
MalI GATC 5 cut(s) 95, 189, 543, 661, 882
MboI GATC 5 cut(s) 93, 187, 541, 659, 880
MboII GAAGA 3 cut(s) 145, 321, 871
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 2 cut(s) 93, 880
MhlI GDGCHC 6 cut(s) 109, 242, 273, 757, 835, 939
MluCI AATT 5 cut(s) 31, 507, 647, 735, 895
MlyI GAGTC 3 cut(s) 218, 335, 542
MnlI CCTC 6 cut(s) 96, 159, 473, 534, 631, 910
Mph1103I ATGCAT 2 cut(s) 770, 955
MroI TCCGGA 1 cut(s) 234
MseI TTAA 3 cut(s) 56, 606, 678
MslI CAYNNNNRTG 3 cut(s) 396, 707, 815
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 4 cut(s) 12, 47, 235, 243
MspR9I CCNGG 2 cut(s) 47, 746
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 2 cut(s) 386, 786
NciI CCSGG 1 cut(s) 47
NdeII GATC 5 cut(s) 93, 187, 541, 659, 880
NlaIV GGNNCC 2 cut(s) 147, 280
NmuCI GTSAC 3 cut(s) 200, 534, 720
NsbI TGCGCA 2 cut(s) 176, 821
NsiI ATGCAT 2 cut(s) 770, 955
NspI RCATGY 3 cut(s) 175, 365, 820
PaqCI CACCTGC 1 cut(s) 976
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 5 cut(s) 8, 67, 312, 629, 983
PflMI CCANNNNNTGG 1 cut(s) 877
PfoI TCCNGGA 2 cut(s) 45, 744
PkrI GCNGC 3 cut(s) 64, 869, 973
PleI GAGTC 3 cut(s) 217, 334, 541
PpsI GAGTC 3 cut(s) 217, 334, 541
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 2 cut(s) 242, 939
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 2 cut(s) 147, 280
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 2 cut(s) 93, 880
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 3 cut(s) 396, 707, 815
SacI GAGCTC 2 cut(s) 242, 939
SaqAI TTAA 3 cut(s) 56, 606, 678
SatI GCNGC 3 cut(s) 63, 868, 972
Sau3AI GATC 5 cut(s) 93, 187, 541, 659, 880
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 3 cut(s) 218, 335, 542
ScrFI CCNGG 2 cut(s) 47, 746
SduI GDGCHC 6 cut(s) 109, 242, 273, 757, 835, 939
SfaNI GCATC 4 cut(s) 8, 412, 435, 940
SfcI CTRYAG 2 cut(s) 432, 969
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 396, 707, 815
SmlI CTYRAG 2 cut(s) 499, 530
SmoI CTYRAG 2 cut(s) 499, 530
Sse9I AATT 5 cut(s) 31, 507, 647, 735, 895
SsiI CCGC 3 cut(s) 62, 654, 868
SspMI CTAG 2 cut(s) 657, 941
SstI GAGCTC 2 cut(s) 242, 939
StyD4I CCNGG 2 cut(s) 45, 744
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 200, 603, 720, 763
TaqI TCGA 4 cut(s) 255, 267, 713, 849
TasI AATT 5 cut(s) 31, 507, 647, 735, 895
TauI GCSGC 2 cut(s) 65, 870
TfiI GAWTC 5 cut(s) 8, 67, 312, 629, 983
Tru1I TTAA 3 cut(s) 56, 606, 678
Tru9I TTAA 3 cut(s) 56, 606, 678
TscAI CASTG 3 cut(s) 81, 93, 729
TseFI GTSAC 3 cut(s) 200, 534, 720
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 3 cut(s) 200, 534, 720
TspDTI ATGAA 3 cut(s) 137, 365, 785
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 3 cut(s) 81, 93, 729
Van91I CCANNNNNTGG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 507, 647
XceI RCATGY 3 cut(s) 175, 365, 820
XspI CTAG 2 cut(s) 657, 941
Zsp2I ATGCAT 2 cut(s) 770, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.