Rh5CG128400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000586
Physical Location & Seq
Forward (+)
10706203 .. 10709809
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG128400.1

Sequence Viewer

Length: 1614 bp
ATGCCTTGGTATGTGCTAATGTATTTATTTAAAACCTTTTGTAGTTCAAGTGGCATCAGACACCTCCGACTGTTGTCTTGCGAGGAGGAAATAACAACTCAGGGATTGGCGAAAGTGGCTTCCAAACTTCCTCTTTTGGAGGAACTTGAGATTACATTGTGCTTTAATATCTCACATGAAGCTCTAGATGTGGTTGGGCGCTCTTGCCCTCTTTTGAAATCATTCAAGTTGAACAAAGAGTGGTGCACATATTCAGATATGGAGGATTGGTTTGAGGATGATGCACCTTCACAAGTTGAAGACGATGTAGATGCGCTGGCTATAGCAAGATCTATGCATGGTTTACACCACCTCCAGCTTTACGGGAATAAGCTTACAGATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCGTTGTTTCAATCTTAATATGGGTGGAGATTTGGAAATAAGACTTGAACAAATTAAAAAATTGTGGCTTCCTCATGATTCCACCAAGGGAAAAGGCTTTGCCGCTGATTCTGACCATTTCTGCTTTAAATGGACGGAACTCCCAGATGATGTTACCTTGTCAATCCTGTCACGGGTTGGAGCAATTGATATCTTAGTGAATGCTCAGAAGGTTTGCATGAAGTGGCGCAGAATCTGCAAGGACCCTGTCATGTGGCGCACCATTGACATGCGAAATCGTGGTTATGAGGTGTATGACTTGGGCAAGATGTGTCGCCATGCAATCGATCGTAGCTGTGGTAATTTGGATGATATCAGTATTGACCATTTTGGCACCAATCGGCTCCTCAAGTACATCACTGACAGTTCAAGCAGAATCAAACGCCTCCGACTAGCACTTTGCAAGAGAATATCAGATCAAGGAGTGATTGAAGTGGCCATGAAACTTCCGCTTCTGGAGGACCTTGAAATTTCATTATGCCGACTCTCACGCAAATCCCTAGAAGTAGTTGGTCGCTCTTGCCCTCTTTTGAAATCTTTTAAATTGAACCGGCGAACAGATGATGATTATGATGCGTCCATTGCTTTTACAAAGAAAAATGATGAAGCTCTTGCTATTGCAAGAACAATGCATGGTTTACACCACCTTCAGCTTTTTGGGAACGAGTTGACTAATGAGGGCTTGAAGGAAATTCTTGATGGTTGTCCTCATCTTGAGTCACTCGACTTGCGATGTTGTGAGAACCTTAATCTGAAGGGTCCTTTGGGAATAAGATGTTCTGAGCAGATTAAAAAATTGTGGCTTCCTCGTGATTCTATTGCTGACTATGACTTCCGTTTTACTGTTTGTGGTTATGGATCCCCACGTAAGTTTACTGTATCTGACCTAATTGGATTTCCCAGAATTGATAATGATTATGACGAATACGGCTATGGTAATTATGGTGGATGGTGCTCCGATGATAGTGATTGGTATGATGATTTCACTAAACCTCCATTAGAAGAGCTTCTTGGACTTGATGAGGAAGATCTTGAATTTTTTGGACTTGGGAAGGGACGTAGAAGGGATTACCTGGAAGATTTTTATGATTTTGAAGATTATGGAGATTATGAAAGTGATGATGAGATGTTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

537

Amino Acids

62.01

Weight (kDa)

5.06

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 190 - 236 4.4e-10 F-box-like
F-box PF00646 190 - 232 3e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 809
AciI CCGC 2 cut(s) 540, 926
AclWI GGATC 2 cut(s) 1329, 1342
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 4 cut(s) 396, 945, 1167, 1511
AcuI CTGAAG 2 cut(s) 1109, 1250
AfaI GTAC 1 cut(s) 830
AfiI CCNNNNNNNGG 1 cut(s) 610
AjnI CCWGG 1 cut(s) 1548
AjuI GAANNNNNNNTTGG 4 cut(s) 1223, 1255, 1470, 1502
AluBI AGCT 7 cut(s) 182, 358, 373, 771, 1085, 1129, 1483
AluI AGCT 7 cut(s) 182, 358, 373, 771, 1085, 1129, 1483
Alw21I GWGCWC 2 cut(s) 248, 1433
Alw44I GTGCAC 1 cut(s) 244
AlwI GGATC 2 cut(s) 1329, 1342
AlwNI CAGNNNCTG 1 cut(s) 672
AoxI GGCC 1 cut(s) 912
ApaLI GTGCAC 1 cut(s) 244
ApoI RAATTY 4 cut(s) 396, 945, 1167, 1511
ArsI GACNNNNNNTTYG 2 cut(s) 858, 890
Asp700I GAANNNNTTC 2 cut(s) 221, 1482
AspLEI GCGC 5 cut(s) 201, 316, 438, 666, 696
AspS9I GGNCC 3 cut(s) 679, 937, 1235
AvaII GGWCC 3 cut(s) 679, 937, 1235
BaeGI GKGCMC 1 cut(s) 248
BalI TGGCCA 1 cut(s) 914
BamHI GGATCC 1 cut(s) 1334
BanI GGYRCC 1 cut(s) 809
BauI CACGAG 1 cut(s) 1284
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 248, 1433
BccI CCATC 3 cut(s) 377, 1169, 1419
BceAI ACGGC 2 cut(s) 423, 1420
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 1550
BfaI CTAG 3 cut(s) 185, 869, 977
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 202
BglII AGATCT 2 cut(s) 329, 1504
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 1550
Bme18I GGWCC 3 cut(s) 679, 937, 1235
BmgT120I GGNCC 3 cut(s) 679, 937, 1235
BmiI GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
BmrFI CCNGG 1 cut(s) 1550
BmsI GCATC 4 cut(s) 63, 271, 301, 1039
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 338, 953
BpuEI CTTGAG 5 cut(s) 167, 409, 440, 809, 1211
Bsa29I ATCGAT 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 1343
BsaJI CCNNGG 2 cut(s) 5, 522
BsaXI ACNNNNNCTCC 6 cut(s) 254, 284, 336, 366, 1453, 1483
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 1026
Bse3DI GCAATG 1 cut(s) 1056
BseBI CCWGG 1 cut(s) 1550
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 2 cut(s) 5, 522
BseGI GGATG 3 cut(s) 283, 790, 1430
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 3 cut(s) 113, 656, 1248
BseRI GAGGAG 2 cut(s) 98, 812
BseSI GKGCMC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 766
BshFI GGCC 1 cut(s) 914
BshNI GGYRCC 1 cut(s) 809
BshVI ATCGAT 1 cut(s) 762
BsiEI CGRYCG 1 cut(s) 766
BsiHKAI GWGCWC 2 cut(s) 248, 1433
BsiSI CCGG 1 cut(s) 1027
BslFI GGGAC 1 cut(s) 1545
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 1545
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 1 cut(s) 914
Bsp1286I GDGCHC 2 cut(s) 248, 1433
Bsp143I GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
BspACI CCGC 2 cut(s) 540, 926
BspANI GGCC 1 cut(s) 914
BspCNI CTCAG 3 cut(s) 112, 655, 1249
BspDI ATCGAT 1 cut(s) 762
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
BspPI GGATC 2 cut(s) 1329, 1342
BspQI GCTCTTC 1 cut(s) 1473
BspT107I GGYRCC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 1056
BsrFI RCCGGY 1 cut(s) 1026
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 2 cut(s) 5, 522
BssMI GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
BssSI CACGAG 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 5, 522
Bst2BI CACGAG 1 cut(s) 1284
Bst2UI CCWGG 1 cut(s) 1550
Bst4CI ACNGT 4 cut(s) 72, 842, 1321, 1354
Bst6I CTCTTC 1 cut(s) 1473
BstAPI GCANNNNNTGC 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 1343
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 99, 631, 642, 1257
BstF5I GGATG 3 cut(s) 283, 790, 1430
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 5 cut(s) 201, 316, 438, 666, 696
BstKTI GATC 6 cut(s) 332, 433, 766, 895, 1337, 1507
BstMBI GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
BstMCI CGRYCG 1 cut(s) 766
BstMWI GCNNNNNNNGC 3 cut(s) 116, 672, 1058
BstNI CCWGG 1 cut(s) 1550
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 1548
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 329, 1334, 1504
BstYI RGATCY 3 cut(s) 329, 1334, 1504
Bsu15I ATCGAT 1 cut(s) 762
BsuRI GGCC 1 cut(s) 914
BsuTUI ATCGAT 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 1222
BtsCI GGATG 3 cut(s) 283, 790, 1430
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 672
CciI TCATGA 1 cut(s) 511
CfoI GCGC 5 cut(s) 201, 316, 438, 666, 696
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 3 cut(s) 679, 937, 1235
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 1 cut(s) 1041
Csp6I GTAC 1 cut(s) 829
CviAII CATG 9 cut(s) 176, 338, 512, 655, 688, 706, 755, 916, 1109
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 4 cut(s) 99, 631, 642, 1257
DpnI GATC 6 cut(s) 331, 432, 765, 894, 1336, 1506
DpnII GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
DraI TTTAAA 3 cut(s) 31, 565, 1018
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 1473
EarI CTCTTC 1 cut(s) 1473
Eco130I CCWWGG 2 cut(s) 5, 522
Eco32I GATATC 2 cut(s) 628, 790
Eco47I GGWCC 3 cut(s) 679, 937, 1235
Eco57I CTGAAG 2 cut(s) 1109, 1250
EcoO109I RGGNCCY 3 cut(s) 679, 937, 1235
EcoRII CCWGG 1 cut(s) 1548
EcoRV GATATC 2 cut(s) 628, 790
EcoT14I CCWWGG 2 cut(s) 5, 522
EcoT22I ATGCAT 2 cut(s) 339, 1110
ErhI CCWWGG 2 cut(s) 5, 522
FaeI CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
FalI AAGNNNNNCTT 2 cut(s) 1470, 1502
FaqI GGGAC 1 cut(s) 1545
FatI CATG 9 cut(s) 175, 337, 511, 654, 687, 705, 754, 915, 1108
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 3 cut(s) 290, 797, 1437
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 3 cut(s) 185, 869, 977
GlaI GCGC 5 cut(s) 200, 315, 437, 665, 695
GluI GCNGC 1 cut(s) 540
GsuI CTGGAG 2 cut(s) 338, 953
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 1 cut(s) 914
HapII CCGG 1 cut(s) 1027
HgaI GACGC 1 cut(s) 1041
HhaI GCGC 5 cut(s) 201, 316, 438, 666, 696
Hin1II CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
Hin6I GCGC 5 cut(s) 199, 314, 436, 664, 694
HinP1I GCGC 5 cut(s) 199, 314, 436, 664, 694
HincII GTYRAC 1 cut(s) 1146
HindII GTYRAC 1 cut(s) 1146
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 8 cut(s) 422, 515, 545, 669, 852, 960, 1193, 1289
HpaII CCGG 1 cut(s) 1027
Hpy166II GTNNAC 5 cut(s) 246, 344, 1115, 1146, 1350
Hpy188III TCNNGA 9 cut(s) 185, 401, 419, 512, 932, 1172, 1190, 1286, 1508
Hpy8I GTNNAC 5 cut(s) 246, 344, 1115, 1146, 1350
HpyAV CCTTC 7 cut(s) 297, 640, 1133, 1156, 1225, 1522, 1533
HpyCH4III ACNGT 4 cut(s) 72, 842, 1321, 1354
HpyCH4IV ACGT 2 cut(s) 1342, 1534
HpyCH4V TGCA 9 cut(s) 246, 284, 337, 654, 675, 758, 879, 1097, 1108
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 672, 1058
HpyF3I CTNAG 4 cut(s) 99, 631, 642, 1257
HpySE526I ACGT 2 cut(s) 1342, 1534
Hsp92II CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
HspAI GCGC 5 cut(s) 199, 314, 436, 664, 694
Kzo9I GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
LguI GCTCTTC 1 cut(s) 1473
LmnI GCTCC 3 cut(s) 617, 825, 1436
LweI GCATC 4 cut(s) 63, 271, 301, 1039
MaeI CTAG 3 cut(s) 185, 869, 977
MaeII ACGT 2 cut(s) 1342, 1534
MaeIII GTNAC 4 cut(s) 423, 589, 606, 1194
MalI GATC 6 cut(s) 331, 432, 765, 894, 1336, 1506
MboI GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
MboII GAAGA 5 cut(s) 311, 1490, 1514, 1565, 1583
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 3 cut(s) 329, 1334, 1504
MhlI GDGCHC 2 cut(s) 248, 1433
MlsI TGGCCA 1 cut(s) 914
MluNI TGGCCA 1 cut(s) 914
MlyI GAGTC 3 cut(s) 431, 954, 1202
MmeI TCCRAC 3 cut(s) 91, 595, 889
Mox20I TGGCCA 1 cut(s) 914
Mph1103I ATGCAT 2 cut(s) 339, 1110
MroXI GAANNNNTTC 2 cut(s) 221, 1482
MscI TGGCCA 1 cut(s) 914
MseI TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 1 cut(s) 1550
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 1550
MwoI GCNNNNNNNGC 3 cut(s) 116, 672, 1058
NdeII GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
NlaIII CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
NlaIV GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
NmuCI GTSAC 3 cut(s) 423, 606, 1194
NsiI ATGCAT 2 cut(s) 339, 1110
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 1473
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 2 cut(s) 221, 1482
PfeI GAWTC 5 cut(s) 515, 545, 669, 852, 1289
PflFI GACNNNGTC 1 cut(s) 683
PkrI GCNGC 1 cut(s) 541
Ple19I CGATCG 1 cut(s) 766
PleI GAGTC 3 cut(s) 430, 954, 1201
PpsI GAGTC 3 cut(s) 430, 954, 1201
Ppu21I YACGTR 1 cut(s) 1343
PpuMI RGGWCCY 3 cut(s) 679, 937, 1235
PshAI GACNNNNGTC 1 cut(s) 73
Psp5II RGGWCCY 3 cut(s) 679, 937, 1235
Psp6I CCWGG 1 cut(s) 1548
PspGI CCWGG 1 cut(s) 1548
PspN4I GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
PspPI GGNCC 3 cut(s) 679, 937, 1235
PspPPI RGGWCCY 3 cut(s) 679, 937, 1235
PstNI CAGNNNCTG 1 cut(s) 672
PsuI RGATCY 3 cut(s) 329, 1334, 1504
PsyI GACNNNGTC 1 cut(s) 683
PvuI CGATCG 1 cut(s) 766
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
RseI CAYNNNNRTG 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 1473
SaqAI TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 6 cut(s) 329, 430, 763, 892, 1334, 1504
Sau96I GGNCC 3 cut(s) 679, 937, 1235
SchI GAGTC 3 cut(s) 431, 954, 1202
ScrFI CCNGG 1 cut(s) 1550
SduI GDGCHC 2 cut(s) 248, 1433
SfaNI GCATC 4 cut(s) 63, 271, 301, 1039
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 3 cut(s) 679, 937, 1235
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 5 cut(s) 146, 388, 419, 824, 1190
SmoI CTYRAG 5 cut(s) 146, 388, 419, 824, 1190
SsiI CCGC 2 cut(s) 540, 926
SspMI CTAG 3 cut(s) 185, 869, 977
StyD4I CCNGG 1 cut(s) 1548
StyI CCWWGG 2 cut(s) 5, 522
TaaI ACNGT 4 cut(s) 72, 842, 1321, 1354
TaiI ACGT 2 cut(s) 1345, 1537
TaqI TCGA 2 cut(s) 762, 1200
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 5 cut(s) 515, 545, 669, 852, 1289
Tru1I TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
Tru9I TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 3 cut(s) 423, 606, 1194
Tsp45I GTSAC 3 cut(s) 423, 606, 1194
TspDTI ATGAA 6 cut(s) 192, 671, 932, 939, 1095, 1602
TspGWI ACGGA 2 cut(s) 587, 1301
TspRI CASTG 1 cut(s) 841
Tth111I GACNNNGTC 1 cut(s) 683
VneI GTGCAC 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 679, 937, 1235
XapI RAATTY 4 cut(s) 396, 945, 1167, 1511
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 709
XmnI GAANNNNTTC 2 cut(s) 221, 1482
XspI CTAG 3 cut(s) 185, 869, 977
Zsp2I ATGCAT 2 cut(s) 339, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.