RLG00000032191

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000586
Physical Location & Seq
Forward (+)
11922159 .. 11924013
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032191

Sequence Viewer

Length: 684 bp
ATGGAGGGAGATTGGAGAAGTACATGTGCTGAACGAATTAAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTAGCTAGATCTGAAGCTTATTGTTTTAAATGGACAGAACTCCCAGACAAAGTTACGGCATCAATGCTGTCAAGGCTTGGAGGGATTGACATCCTCACTTCCGCTCAGAAGGTCTGCTCCAAGTGGTTCAAAATATGCAAGGACCCTCTGATGTGGCGCACCATTGACATGAGCAATAATTTTGATTTTGACGACTACAAGCCCTTCTTCTTCCATGAGTTGTGTGAACATGCCATTGAGCGTAGCTGTGGTAATCTGGTTGACATCAATGTTGAGAACTTTGGCACTAATGAGCTCCTTAAATATTATATCGCTGATAGATTTAACAAACGTTGGTTCGAAGAAGACCAATATAGAAATGTGCGTTACAAGCTTGAGCGTAATGACTGTGCACTTGCTATAGCAGGAACGATGCCTGGGTTACACCACCTCATGCTCTTTAGGAATCAGCTGACCAATAAAGGCTTGTGCGCCATTCTTGATGGTTGTTCTCAGCTTCAGTCACTTGATCTGCGCCAGTGTTTCAATCTTAAATTAGGGGGAAAGCTCGGAAGAAGATGTGTAGAACAAGTTAAAAAGTTGCGCGCGGCTTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

228

Amino Acids

26.44

Weight (kDa)

8.45

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 39 - 85 2.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 2 cut(s) 669, 671
AciI CCGC 2 cut(s) 186, 671
AclI AACGTT 1 cut(s) 415
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 2 cut(s) 117, 566
AfaI GTAC 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 2 cut(s) 214, 610
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 8 cut(s) 89, 101, 330, 379, 457, 535, 580, 631
AluI AGCT 8 cut(s) 89, 101, 330, 379, 457, 535, 580, 631
Alw21I GWGCWC 2 cut(s) 381, 478
Alw44I GTGCAC 1 cut(s) 474
ApaLI GTGCAC 1 cut(s) 474
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 5 cut(s) 243, 557, 600, 669, 671
AspS9I GGNCC 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 381, 478
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 501
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 483
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 152, 486
BpiI GAAGAC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 173
BseMII CTCAG 3 cut(s) 60, 203, 590
BseNI ACTGG 1 cut(s) 601
BsePI GCGCGC 1 cut(s) 667
BseSI GKGCMC 1 cut(s) 478
Bsh1236I CGCG 2 cut(s) 669, 671
BsiHKAI GWGCWC 2 cut(s) 381, 478
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 381, 478
Bsp143I GATC 2 cut(s) 92, 592
BspACI CCGC 2 cut(s) 186, 671
BspCNI CTCAG 3 cut(s) 61, 202, 589
BspFNI CGCG 2 cut(s) 669, 671
BspLI GGNNCC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 423
BsrBI CCGCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 1 cut(s) 500
BssHII GCGCGC 1 cut(s) 667
BssMI GATC 2 cut(s) 92, 592
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 3 cut(s) 69, 189, 576
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 2 cut(s) 669, 671
BstHHI GCGC 5 cut(s) 243, 557, 600, 669, 671
BstKTI GATC 2 cut(s) 95, 595
BstMBI GATC 2 cut(s) 92, 592
BstMWI GCNNNNNNNGC 2 cut(s) 157, 454
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 2 cut(s) 27, 317
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 478
BstUI CGCG 2 cut(s) 669, 671
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 66, 608
Cac8I GCNNGC 1 cut(s) 669
CfoI GCGC 5 cut(s) 243, 557, 600, 669, 671
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 21
CviAII CATG 7 cut(s) 24, 59, 253, 299, 314, 517, 681
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 3 cut(s) 69, 189, 576
DpnI GATC 2 cut(s) 94, 594
DpnII GATC 2 cut(s) 92, 592
DraI TTTAAA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 117, 566
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 7 cut(s) 27, 62, 256, 302, 317, 520, 684
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 7 cut(s) 23, 58, 252, 298, 313, 516, 680
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 672
FspBI CTAG 1 cut(s) 90
GlaI GCGC 5 cut(s) 242, 556, 599, 668, 670
GluI GCNGC 1 cut(s) 672
HhaI GCGC 5 cut(s) 243, 557, 600, 669, 671
Hin1II CATG 7 cut(s) 27, 62, 256, 302, 317, 520, 684
Hin6I GCGC 5 cut(s) 241, 555, 598, 667, 669
HinP1I GCGC 5 cut(s) 241, 555, 598, 667, 669
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 99, 455
HinfI GANTC 2 cut(s) 62, 529
Hpy166II GTNNAC 3 cut(s) 311, 346, 476
Hpy188I TCNGA 4 cut(s) 97, 192, 234, 635
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 3 cut(s) 311, 346, 476
HpyAV CCTTC 2 cut(s) 187, 298
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 2 cut(s) 222, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 454
HpyF3I CTNAG 3 cut(s) 69, 189, 576
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 7 cut(s) 27, 62, 256, 302, 317, 520, 684
HspAI GCGC 5 cut(s) 241, 555, 598, 667, 669
Kzo9I GATC 2 cut(s) 92, 592
LmnI GCTCC 2 cut(s) 206, 384
LpnPI CCDG 6 cut(s) 141, 326, 474, 486, 513, 614
LweI GCATC 2 cut(s) 152, 486
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 4 cut(s) 136, 449, 504, 585
MalI GATC 2 cut(s) 94, 594
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 92, 592
MboII GAAGA 6 cut(s) 283, 286, 437, 440, 648, 651
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 381, 478
MluCI AATT 5 cut(s) 36, 44, 80, 262, 617
MnlI CCTC 5 cut(s) 64, 158, 188, 240, 524
MseI TTAA 6 cut(s) 39, 111, 384, 408, 615, 657
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 535
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 2 cut(s) 669, 671
MwoI GCNNNNNNNGC 2 cut(s) 157, 454
NdeII GATC 2 cut(s) 92, 592
NlaIII CATG 7 cut(s) 27, 62, 256, 302, 317, 520, 684
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 585
NspI RCATGY 2 cut(s) 27, 317
NspV TTCGAA 1 cut(s) 423
PauI GCGCGC 1 cut(s) 667
PciI ACATGT 1 cut(s) 23
PfeI GAWTC 2 cut(s) 62, 529
PkrI GCNGC 1 cut(s) 673
PpuMI RGGWCCY 1 cut(s) 226
PscI ACATGT 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 381
Psp1406I AACGTT 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 1 cut(s) 92
PteI GCGCGC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 535
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 6 cut(s) 39, 111, 384, 408, 615, 657
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 2 cut(s) 92, 592
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 2 cut(s) 381, 478
SfaNI GCATC 2 cut(s) 152, 486
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 5 cut(s) 36, 44, 80, 262, 617
SsiI CCGC 2 cut(s) 186, 671
SspI AATATT 1 cut(s) 389
SspMI CTAG 1 cut(s) 90
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 423
TasI AATT 5 cut(s) 36, 44, 80, 262, 617
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 2 cut(s) 62, 529
Tru1I TTAA 6 cut(s) 39, 111, 384, 408, 615, 657
Tru9I TTAA 6 cut(s) 39, 111, 384, 408, 615, 657
TscAI CASTG 2 cut(s) 73, 608
TseFI GTSAC 1 cut(s) 585
Tsp45I GTSAC 1 cut(s) 585
TspRI CASTG 2 cut(s) 73, 608
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 80
XceI RCATGY 2 cut(s) 27, 317
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.