Rh5DG117800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000586
Physical Location & Seq
Forward (+)
10619558 .. 10622973
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117800.1

Sequence Viewer

Length: 1575 bp
ATGAAATGGCGCAAAGTCTGCAAGGACCCTCTCCTCTGGCGCAAGATTGACATGCGCAACGATGGCGATCTCGAAGACATAGACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTAATCGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGCACTTCGGCACCGATGAGCTGCTTGAGTATATCACTGATAGCTCGAGTGGAATCAGACGTCTCCGACTGTTGTGTTGTGATGACATATCAGATGCGGGATTGAGTAAAGTGGCTTTAAAACTTCCATTGTTGGAGGAACTTGACATTTCTCTATGCGATAATATCTCGCATGAAGCTGTAGAAGTGCTTGGCCGCTCTTGCCCCTTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTTTCACAAGACGGCCGCGGGCCATACGAGTTTCATTTCAGTGATTATTATTCACGTATTCTTGATGCTTACCGAAAAAGAAATCAAGTACCCTTTCATTGGAATGTGGATTATGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGACAAGCATTCTTGATTGTTGTGCTGATCTTGTCTCACTTGACATGCGCCATTGTTTCATTCTCAATATGGAGGGAGATTGGAGAAGTACATGTGCTGAACGAATTAAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTAGCTAGATCTGAAGCTTATTGTTTTAAATGGACAGAACTCCCAGACAAAGTTACGGCATCAATACTGTCAAGGCTTGGAGGGATTGACATCCTCACTTCCGCTCAGAAGGTCTGCGCCAAGTGGTTCAAAATATGCAAGGACCCTCTGATGTGGCGCACCATTGACATGCGCAATAATTTTGATTTTGACGACTACAAGCCCTTCTTCTTCCATGAGTTGTGCGAACATGCCATTGAGCGTAGCTGTGGTAATCTGGTTGACATCAATGTTGAGAACTTTGGCACTAATGAGCTCCTTAAATATTATATCACTGAGAGTTCAAGTGGACTTAAACGCCTCCGTTTAGTTGGTTCTCATAGAATAACAGACGAGGGCCTCCGTGAAGTAGCTTCAAAATTTCCAGTGCTGGAGGACCTGGACATTTCATTGATCGAGGATATTTCACATGTAACTCTTGCATTAATTGGGTGCTCATGCCCTCTTTTGAAATCATTCAGATTTAACAAACGTTGGTTCGAAGAAGACCAATATAGAAATGTGCGTTACAAGCTTGAGCGTAATGACTGTGCACTTGCTATAGCAGGAACGATGCCTGGGTTACACCACCTCATGCTCTTTAGGAATCAGCTGACCAATAAAGGCTTGTGCGCCATTCTTGATGGTTGTTCTCAGCTTCAGTCACTTGATCTGCGCCAGTGTTTCAATCTTAAATTAGGGGGAAAGCTCGGAAGAAGATGTGTAGAACAAGTTAAAAAGTTGCGGCTTCCACATGATTCTGTCCATGACATTGACCCATCATATAAATTTGTTTTTGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

524

Amino Acids

60.6

Weight (kDa)

5.9

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 261 - 307 2.2e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 217
Acc16I TGCGCA 2 cut(s) 56, 923
AccB1I GGYRCC 1 cut(s) 164
AccBSI CCGCTC 2 cut(s) 351, 854
AccII CGCG 1 cut(s) 417
AciI CCGC 7 cut(s) 106, 251, 349, 415, 417, 852, 1513
AclI AACGTT 1 cut(s) 1261
AcoI YGGCCR 2 cut(s) 346, 412
AcsI RAATTY 3 cut(s) 746, 1148, 1556
AcuI CTGAAG 2 cut(s) 783, 1412
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 2 cut(s) 489, 688
AfiI CCNNNNNNNGG 2 cut(s) 120, 498
AflIII ACRYGT 2 cut(s) 689, 1198
AgsI TTSAA 8 cut(s) 367, 376, 382, 880, 1074, 1146, 1240, 1456
AjnI CCWGG 2 cut(s) 1167, 1345
Alw21I GWGCWC 5 cut(s) 128, 159, 1047, 1226, 1324
Alw26I GTCTC 2 cut(s) 221, 637
Alw44I GTGCAC 1 cut(s) 1320
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 4 cut(s) 346, 412, 419, 1126
ApaLI GTGCAC 1 cut(s) 1320
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 3 cut(s) 746, 1148, 1556
AseI ATTAAT 1 cut(s) 1214
Asp700I GAANNNNTTC 2 cut(s) 371, 1244
AspLEI GCGC 9 cut(s) 12, 42, 57, 648, 869, 909, 924, 1403, 1446
AspS9I GGNCC 5 cut(s) 25, 419, 892, 1126, 1165
AsuII TTCGAA 1 cut(s) 1269
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 3 cut(s) 25, 892, 1165
BaeGI GKGCMC 1 cut(s) 1324
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 2 cut(s) 128, 1047
BbsI GAAGAC 2 cut(s) 81, 1281
Bbv12I GWGCWC 5 cut(s) 128, 159, 1047, 1226, 1324
BbvI GCAGC 1 cut(s) 162
BccI CCATC 4 cut(s) 56, 587, 1406, 1555
BceAI ACGGC 3 cut(s) 98, 427, 822
BciT130I CCWGG 2 cut(s) 1169, 1347
BcoDI GTCTC 2 cut(s) 221, 637
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 3 cut(s) 333, 531, 1329
BglII AGATCT 1 cut(s) 758
BisI GCNGC 5 cut(s) 106, 176, 349, 415, 1514
BlsI GCNGC 5 cut(s) 107, 177, 350, 416, 1515
Bme1390I CCNGG 2 cut(s) 1169, 1347
Bme18I GGWCC 3 cut(s) 25, 892, 1165
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 5 cut(s) 25, 419, 892, 1126, 1165
BmiI GGNNCC 4 cut(s) 27, 166, 541, 894
BmrFI CCNGG 2 cut(s) 1169, 1347
BmsI GCATC 5 cut(s) 238, 454, 505, 818, 1332
BpiI GAAGAC 2 cut(s) 81, 1281
BpmI CTGGAG 2 cut(s) 548, 1181
Bpu14I TTCGAA 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 200, 1325
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 2 cut(s) 66, 839
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 415, 1346
BsaXI ACNNNNNCTCC 6 cut(s) 86, 115, 116, 145, 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 498
Bse1I ACTGG 2 cut(s) 1154, 1447
Bse8I GATNNNNATC 2 cut(s) 66, 839
BseBI CCWGG 2 cut(s) 1169, 1347
BseDI CCNNGG 2 cut(s) 415, 1346
BseGI GGATG 1 cut(s) 840
BseJI GATNNNNATC 2 cut(s) 66, 839
BseLI CCNNNNNNNGG 2 cut(s) 120, 498
BseMII CTCAG 4 cut(s) 726, 869, 1056, 1436
BseNI ACTGG 2 cut(s) 1154, 1447
BseRI GAGGAG 2 cut(s) 23, 110
BseSI GKGCMC 1 cut(s) 1324
BseX3I CGGCCG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 4 cut(s) 348, 414, 421, 1128
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 5 cut(s) 128, 159, 1047, 1226, 1324
BsiHKCI CYCGRG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 120, 498
BsmAI GTCTC 2 cut(s) 221, 637
BsmBI CGTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 606
BsnI GGCC 4 cut(s) 348, 414, 421, 1128
BsoBI CYCGRG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 1269
Bsp1286I GDGCHC 5 cut(s) 128, 159, 1047, 1226, 1324
Bsp143I GATC 5 cut(s) 67, 625, 758, 1182, 1438
BspACI CCGC 7 cut(s) 106, 251, 349, 415, 417, 852, 1513
BspANI GGCC 4 cut(s) 348, 414, 421, 1128
BspCNI CTCAG 4 cut(s) 727, 868, 1057, 1435
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 27, 166, 541, 894
BspT104I TTCGAA 1 cut(s) 1269
BspT107I GGYRCC 1 cut(s) 164
BsrBI CCGCTC 2 cut(s) 351, 854
BsrI ACTGG 2 cut(s) 1154, 1447
BssECI CCNNGG 2 cut(s) 415, 1346
BssMI GATC 5 cut(s) 67, 625, 758, 1182, 1438
BssNI GRCGYC 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 1169, 1347
Bst4CI ACNGT 3 cut(s) 225, 819, 1319
BstACI GRCGYC 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 1269
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 4 cut(s) 735, 855, 1065, 1422
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 840
BstFNI CGCG 1 cut(s) 417
BstHHI GCGC 9 cut(s) 12, 42, 57, 648, 869, 909, 924, 1403, 1446
BstKTI GATC 5 cut(s) 70, 628, 761, 1185, 1441
BstMAI GTCTC 2 cut(s) 221, 637
BstMBI GATC 5 cut(s) 67, 625, 758, 1182, 1438
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 5 cut(s) 18, 63, 354, 603, 1300
BstNI CCWGG 2 cut(s) 1169, 1347
BstNSI RCATGY 6 cut(s) 55, 646, 693, 922, 983, 1202
BstSCI CCNGG 2 cut(s) 1167, 1345
BstSFI CTRYAG 3 cut(s) 333, 531, 1329
BstSLI GKGCMC 1 cut(s) 1324
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 2 cut(s) 81, 1281
BstX2I RGATCY 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 1 cut(s) 758
BstZI CGGCCG 1 cut(s) 412
BsuRI GGCC 4 cut(s) 348, 414, 421, 1128
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 1 cut(s) 840
BtsIMutI CAGTG 6 cut(s) 189, 445, 732, 1062, 1161, 1454
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 9 cut(s) 12, 42, 57, 648, 869, 909, 924, 1403, 1446
Cfr13I GGNCC 5 cut(s) 25, 419, 892, 1126, 1165
Cfr42I CCGCGG 1 cut(s) 418
Csp6I GTAC 2 cut(s) 488, 687
CviQI GTAC 2 cut(s) 488, 687
DdeI CTNAG 4 cut(s) 735, 855, 1065, 1422
DpnI GATC 5 cut(s) 69, 627, 760, 1184, 1440
DpnII GATC 5 cut(s) 67, 625, 758, 1182, 1438
DraI TTTAAA 2 cut(s) 273, 778
EaeI YGGCCR 2 cut(s) 346, 412
EagI CGGCCG 1 cut(s) 412
Ecl136II GAGCTC 2 cut(s) 126, 1045
EclXI CGGCCG 1 cut(s) 412
Eco24I GRGCYC 2 cut(s) 128, 1047
Eco47I GGWCC 3 cut(s) 25, 892, 1165
Eco52I CGGCCG 1 cut(s) 412
Eco53kI GAGCTC 2 cut(s) 126, 1045
Eco57I CTGAAG 2 cut(s) 783, 1412
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 2 cut(s) 126, 1045
EcoO109I RGGNCCY 4 cut(s) 25, 892, 1126, 1165
EcoRII CCWGG 2 cut(s) 1167, 1345
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 128, 1047
Esp3I CGTCTC 1 cut(s) 221
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FauI CCCGC 2 cut(s) 244, 410
Fnu4HI GCNGC 5 cut(s) 106, 176, 349, 415, 1514
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 2 cut(s) 128, 1047
Fsp4HI GCNGC 5 cut(s) 106, 176, 349, 415, 1514
FspBI CTAG 1 cut(s) 756
FspI TGCGCA 2 cut(s) 56, 923
GlaI GCGC 9 cut(s) 11, 41, 56, 647, 868, 908, 923, 1402, 1445
GluI GCNGC 5 cut(s) 106, 176, 349, 415, 1514
GsuI CTGGAG 2 cut(s) 548, 1181
HaeIII GGCC 4 cut(s) 348, 414, 421, 1128
HhaI GCGC 9 cut(s) 12, 42, 57, 648, 869, 909, 924, 1403, 1446
Hin1I GRCGYC 1 cut(s) 214
Hin6I GCGC 9 cut(s) 10, 40, 55, 646, 867, 907, 922, 1401, 1444
HinP1I GCGC 9 cut(s) 10, 40, 55, 646, 867, 907, 922, 1401, 1444
HincII GTYRAC 2 cut(s) 585, 1012
HindII GTYRAC 2 cut(s) 585, 1012
HindIII AAGCTT 2 cut(s) 765, 1301
HinfI GANTC 4 cut(s) 207, 728, 1375, 1526
Hpy166II GTNNAC 5 cut(s) 554, 585, 1012, 1079, 1322
Hpy188I TCNGA 9 cut(s) 123, 212, 221, 247, 763, 858, 900, 1250, 1481
Hpy188III TCNNGA 4 cut(s) 71, 461, 611, 1409
Hpy8I GTNNAC 5 cut(s) 554, 585, 1012, 1079, 1322
HpyAV CCTTC 2 cut(s) 853, 964
HpyCH4III ACNGT 3 cut(s) 225, 819, 1319
HpyCH4IV ACGT 3 cut(s) 214, 454, 1261
HpyCH4V TGCA 6 cut(s) 21, 518, 547, 888, 1211, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 63, 354, 603, 1300
HpyF3I CTNAG 4 cut(s) 735, 855, 1065, 1422
HpySE526I ACGT 3 cut(s) 214, 454, 1261
Hsp92I GRCGYC 1 cut(s) 214
HspAI GCGC 9 cut(s) 10, 40, 55, 646, 867, 907, 922, 1401, 1444
KspI CCGCGG 1 cut(s) 418
Kzo9I GATC 5 cut(s) 67, 625, 758, 1182, 1438
LmnI GCTCC 2 cut(s) 123, 1050
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 5 cut(s) 238, 454, 505, 818, 1332
MaeI CTAG 1 cut(s) 756
MaeII ACGT 3 cut(s) 214, 454, 1261
MaeIII GTNAC 5 cut(s) 802, 1201, 1295, 1350, 1431
MalI GATC 5 cut(s) 69, 627, 760, 1184, 1440
MbiI CCGCTC 2 cut(s) 351, 854
MboI GATC 5 cut(s) 67, 625, 758, 1182, 1438
MboII GAAGA 7 cut(s) 86, 949, 952, 1283, 1286, 1494, 1497
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 5 cut(s) 128, 159, 1047, 1226, 1324
MluCI AATT 8 cut(s) 702, 710, 746, 928, 1148, 1215, 1463, 1556
MmeI TCCRAC 2 cut(s) 244, 267
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 2 cut(s) 371, 1244
MslI CAYNNNNRTG 3 cut(s) 438, 501, 917
MspA1I CMGCKG 2 cut(s) 417, 1381
MspR9I CCNGG 2 cut(s) 1169, 1347
Mva1269I GAATGC 1 cut(s) 606
MvaI CCWGG 2 cut(s) 1169, 1347
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 5 cut(s) 18, 63, 354, 603, 1300
NdeII GATC 5 cut(s) 67, 625, 758, 1182, 1438
NlaIV GGNNCC 4 cut(s) 27, 166, 541, 894
NmuCI GTSAC 1 cut(s) 1431
NsbI TGCGCA 2 cut(s) 56, 923
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 6 cut(s) 55, 646, 693, 922, 983, 1202
NspV TTCGAA 1 cut(s) 1269
PaeR7I CTCGAG 1 cut(s) 199
PciI ACATGT 2 cut(s) 689, 1198
PctI GAATGC 1 cut(s) 606
PdmI GAANNNNTTC 2 cut(s) 371, 1244
PfeI GAWTC 4 cut(s) 207, 728, 1375, 1526
PkrI GCNGC 5 cut(s) 107, 177, 350, 416, 1515
Ppu21I YACGTR 1 cut(s) 455
PpuMI RGGWCCY 3 cut(s) 25, 892, 1165
PscI ACATGT 2 cut(s) 689, 1198
PshBI ATTAAT 1 cut(s) 1214
Psp124BI GAGCTC 2 cut(s) 128, 1047
Psp1406I AACGTT 1 cut(s) 1261
Psp5II RGGWCCY 3 cut(s) 25, 892, 1165
Psp6I CCWGG 2 cut(s) 1167, 1345
PspGI CCWGG 2 cut(s) 1167, 1345
PspN4I GGNNCC 4 cut(s) 27, 166, 541, 894
PspPI GGNCC 5 cut(s) 25, 419, 892, 1126, 1165
PspPPI RGGWCCY 3 cut(s) 25, 892, 1165
PspXI VCTCGAGB 1 cut(s) 199
PsuI RGATCY 1 cut(s) 758
PvuII CAGCTG 1 cut(s) 1381
RsaI GTAC 2 cut(s) 489, 688
RsaNI GTAC 2 cut(s) 488, 687
RseI CAYNNNNRTG 3 cut(s) 438, 501, 917
SacI GAGCTC 2 cut(s) 128, 1047
SacII CCGCGG 1 cut(s) 418
SatI GCNGC 5 cut(s) 106, 176, 349, 415, 1514
Sau3AI GATC 5 cut(s) 67, 625, 758, 1182, 1438
Sau96I GGNCC 5 cut(s) 25, 419, 892, 1126, 1165
ScrFI CCNGG 2 cut(s) 1169, 1347
SduI GDGCHC 5 cut(s) 128, 159, 1047, 1226, 1324
SfaNI GCATC 5 cut(s) 238, 454, 505, 818, 1332
SfcI CTRYAG 3 cut(s) 333, 531, 1329
Sfr274I CTCGAG 1 cut(s) 199
Sfr303I CCGCGG 1 cut(s) 418
SfuI TTCGAA 1 cut(s) 1269
SgrBI CCGCGG 1 cut(s) 418
SinI GGWCC 3 cut(s) 25, 892, 1165
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 3 cut(s) 438, 501, 917
SmlI CTYRAG 3 cut(s) 179, 199, 1304
SmoI CTYRAG 3 cut(s) 179, 199, 1304
Sse9I AATT 8 cut(s) 702, 710, 746, 928, 1148, 1215, 1463, 1556
SsiI CCGC 7 cut(s) 106, 251, 349, 415, 417, 852, 1513
SspI AATATT 1 cut(s) 1055
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 2 cut(s) 128, 1047
StyD4I CCNGG 2 cut(s) 1167, 1345
TaaI ACNGT 3 cut(s) 225, 819, 1319
TaiI ACGT 3 cut(s) 217, 457, 1264
TaqI TCGA 5 cut(s) 72, 141, 200, 1185, 1269
TasI AATT 8 cut(s) 702, 710, 746, 928, 1148, 1215, 1463, 1556
TatI WGTACW 1 cut(s) 686
TauI GCSGC 4 cut(s) 108, 351, 417, 1516
TfiI GAWTC 4 cut(s) 207, 728, 1375, 1526
TscAI CASTG 6 cut(s) 196, 445, 739, 1069, 1161, 1454
TseFI GTSAC 1 cut(s) 1431
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 1431
TspDTI ATGAA 6 cut(s) 17, 342, 422, 485, 646, 1167
TspGWI ACGGA 2 cut(s) 1082, 1121
TspRI CASTG 6 cut(s) 196, 445, 739, 1069, 1161, 1454
VneI GTGCAC 1 cut(s) 1320
VpaK11BI GGWCC 3 cut(s) 25, 892, 1165
VspI ATTAAT 1 cut(s) 1214
XapI RAATTY 3 cut(s) 746, 1148, 1556
XceI RCATGY 6 cut(s) 55, 646, 693, 922, 983, 1202
XhoI CTCGAG 1 cut(s) 199
XmnI GAANNNNTTC 2 cut(s) 371, 1244
XspI CTAG 1 cut(s) 756
ZraI GACGTC 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.