Rh5DG117500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000586
Physical Location & Seq
Forward (+)
10603510 .. 10605619
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117500.1

Sequence Viewer

Length: 1080 bp
ATGCAAGATTTACACCACCTCCAGCTTTATGGGAATAAGCTTACAAATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTAGAAACAAGATGTGCTGAACGGATTAAAAGGTTGTGGCTTCCCCATGATTCCATAGAGGGAAAAGAATTTACCGCTAGATCAGATGGGTACTGCTTCAAATGGATTGAACTCCCGGACAATGTTACTATGTCGATACTGTCACGGCTTGGACCAATTGATATCCTGGAGAGTGCTCAGAAGGTATGCATGAAGTGGCGCAAAATCTGCAAGGAACTGAAGTGGAACACCATAGACATGCGCAATGATAGTGTTCCCGACATTACCTTCGACTTAGATAAGATGTGCCGCCATGTTGTTGATCTTAGTTGTGGTAATTTGGTCAATGTGAATGTTGAGGACTTTATCTCGGATGAGCTCCTAGAGTATATCACTGATAGTTCGAGTCGAATCAGACGCCTGCGACTTGTGTGTTCTTATTGCATATCAGATGAGGGATTGATTGAAGTTGCATCAAAACTTCCGCTGTTAGAGGACCTTGACATCTCATTATGCGAAAATTTGTCTCATAAGCCTGTGAAAGTGCTTGGGCACTCTTGCCCTCTTTTGAAATCATTCAAATTGAATAAGCAATGGCACAAATGTTCAGAAAACTTCTTTGAAGAGATTATTGACGATAAAGGTCCTTGGATTAAAGATGACGATGCACTTGCTATTGCAGGAACGATGCATGGTTTATACCACCTGCAGCTTTTCGGGAATCAGCTGACTAATGATGGCTTAAGGGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTAGATCTTCGCTATTGTTTCAACCTTAATCTGGAGGGAGATTTGGGAAGAAGATGCACTGAACAAATTAAAAGATTGTTACTTCCCAAAGATTCAATTGCTGGATATGGATTTTTGCCTTCTACTGATTGGCAATCTCCCAGATCACCTAAATATATTATTGATGGCCTTTTCTCCTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

359

Amino Acids

41.29

Weight (kDa)

5.51

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 80 - 125 2.1e-06 F-box-like
F-box PF00646 80 - 119 6.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 828
Acc16I TGCGCA 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 828
AciI CCGC 3 cut(s) 210, 424, 599
AcsI RAATTY 3 cut(s) 63, 203, 634
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 532
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 925
AflII CTTAAG 1 cut(s) 856
AjnI CCWGG 2 cut(s) 300, 1070
AluBI AGCT 5 cut(s) 25, 40, 493, 826, 841
AluI AGCT 5 cut(s) 25, 40, 493, 826, 841
Alw21I GWGCWC 2 cut(s) 313, 495
Alw26I GTCTC 1 cut(s) 645
AoxI GGCC 1 cut(s) 1060
ApeKI GCWGC 1 cut(s) 823
ApoI RAATTY 3 cut(s) 63, 203, 634
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 3 cut(s) 105, 336, 378
AspS9I GGNCC 3 cut(s) 287, 610, 758
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 1032
AvaII GGWCC 3 cut(s) 287, 610, 758
BaeGI GKGCMC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 313, 495
BbvI GCAGC 1 cut(s) 835
BccI CCATC 5 cut(s) 44, 215, 845, 866, 1052
BceAI ACGGC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 2 cut(s) 302, 1072
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 3 cut(s) 213, 497, 896
BfmI CTRYAG 1 cut(s) 821
BfrI CTTAAG 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 828
BglII AGATCT 1 cut(s) 898
BisI GCNGC 2 cut(s) 424, 824
BlsI GCNGC 2 cut(s) 425, 825
Bme1390I CCNGG 3 cut(s) 251, 302, 1072
Bme18I GGWCC 3 cut(s) 287, 610, 758
BmgT120I GGNCC 3 cut(s) 287, 610, 758
BmrFI CCNGG 3 cut(s) 251, 302, 1072
BmsI GCATC 4 cut(s) 596, 769, 792, 938
BpmI CTGGAG 3 cut(s) 5, 323, 947
BpuEI CTTGAG 3 cut(s) 76, 107, 908
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 761
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 925
Bse3DI GCAATG 2 cut(s) 385, 713
BseBI CCWGG 2 cut(s) 302, 1072
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 925
BseMI GCAATG 2 cut(s) 385, 713
BseMII CTCAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 1 cut(s) 835
BshFI GGCC 1 cut(s) 1062
BsiHKAI GWGCWC 2 cut(s) 313, 495
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 925
BsmAI GTCTC 1 cut(s) 645
BsnI GGCC 1 cut(s) 1062
Bsp1286I GDGCHC 3 cut(s) 313, 495, 669
Bsp143I GATC 5 cut(s) 97, 215, 436, 898, 1037
BspACI CCGC 3 cut(s) 210, 424, 599
BspANI GGCC 1 cut(s) 1062
BspCNI CTCAG 1 cut(s) 325
BspMAI CTGCAG 1 cut(s) 825
BspMI ACCTGC 1 cut(s) 828
BspTI CTTAAG 1 cut(s) 856
BsrDI GCAATG 2 cut(s) 385, 713
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 5 cut(s) 97, 215, 436, 898, 1037
BssNI GRCGYC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 302, 1072
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 532
BstAFI CTTAAG 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 312, 409, 440
BstF5I GGATG 1 cut(s) 493
BstHHI GCGC 3 cut(s) 105, 336, 378
BstKTI GATC 5 cut(s) 100, 218, 439, 901, 1040
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 5 cut(s) 97, 215, 436, 898, 1037
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 302, 1072
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 249, 300, 1070
BstSFI CTRYAG 1 cut(s) 821
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 1 cut(s) 1062
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 507, 951
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 1 cut(s) 536
CfoI GCGC 3 cut(s) 105, 336, 378
Cfr13I GGNCC 3 cut(s) 287, 610, 758
CseI GACGC 1 cut(s) 540
Csp6I GTAC 1 cut(s) 226
CviAII CATG 5 cut(s) 182, 325, 373, 428, 806
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 3 cut(s) 312, 409, 440
DpnI GATC 5 cut(s) 99, 217, 438, 900, 1039
DpnII GATC 5 cut(s) 97, 215, 436, 898, 1037
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 3 cut(s) 287, 610, 758
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 2 cut(s) 610, 758
EcoRII CCWGG 2 cut(s) 300, 1070
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 761
EcoT22I ATGCAT 2 cut(s) 326, 807
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 5 cut(s) 185, 328, 376, 431, 809
FatI CATG 5 cut(s) 181, 324, 372, 427, 805
Fnu4HI GCNGC 2 cut(s) 424, 824
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 2 cut(s) 424, 824
FspBI CTAG 3 cut(s) 213, 497, 896
FspI TGCGCA 1 cut(s) 377
GlaI GCGC 3 cut(s) 104, 335, 377
GluI GCNGC 2 cut(s) 424, 824
GsuI CTGGAG 3 cut(s) 5, 323, 947
HaeIII GGCC 1 cut(s) 1062
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 540
HhaI GCGC 3 cut(s) 105, 336, 378
Hin1I GRCGYC 1 cut(s) 532
Hin1II CATG 5 cut(s) 185, 328, 376, 431, 809
Hin6I GCGC 3 cut(s) 103, 334, 376
HinP1I GCGC 3 cut(s) 103, 334, 376
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 7 cut(s) 89, 185, 520, 525, 835, 890, 986
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 1032
Hpy188I TCNGA 6 cut(s) 220, 315, 487, 530, 565, 724
Hpy188III TCNNGA 7 cut(s) 68, 86, 392, 832, 869, 887, 926
HpyAV CCTTC 3 cut(s) 310, 412, 1023
HpyCH4III ACNGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 3 cut(s) 312, 409, 440
Hsp92I GRCGYC 1 cut(s) 532
Hsp92II CATG 5 cut(s) 185, 328, 376, 431, 809
HspAI GCGC 3 cut(s) 103, 334, 376
Kzo9I GATC 5 cut(s) 97, 215, 436, 898, 1037
LmnI GCTCC 1 cut(s) 498
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 4 cut(s) 596, 769, 792, 938
MaeI CTAG 3 cut(s) 213, 497, 896
MaeIII GTNAC 5 cut(s) 90, 259, 276, 891, 972
MalI GATC 5 cut(s) 99, 217, 438, 900, 1039
MboI GATC 5 cut(s) 97, 215, 436, 898, 1037
MboII GAAGA 4 cut(s) 749, 893, 954, 957
MfeI CAATTG 2 cut(s) 291, 990
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 3 cut(s) 313, 495, 669
MluCI AATT 9 cut(s) 63, 203, 291, 451, 634, 695, 864, 960, 990
MlyI GAGTC 3 cut(s) 98, 529, 899
MnlI CCTC 9 cut(s) 29, 90, 187, 466, 562, 601, 687, 891, 922
Mph1103I ATGCAT 2 cut(s) 326, 807
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 5 cut(s) 162, 768, 857, 921, 963
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 2 cut(s) 601, 841
MspCI CTTAAG 1 cut(s) 856
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 251, 302, 1072
MunI CAATTG 2 cut(s) 291, 990
MvaI CCWGG 2 cut(s) 302, 1072
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 251
NdeII GATC 5 cut(s) 97, 215, 436, 898, 1037
NlaIII CATG 5 cut(s) 185, 328, 376, 431, 809
NmuCI GTSAC 3 cut(s) 90, 276, 891
NsbI TGCGCA 1 cut(s) 377
NsiI ATGCAT 2 cut(s) 326, 807
NspI RCATGY 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 185, 525, 835, 986
PfoI TCCNGGA 2 cut(s) 249, 300
PkrI GCNGC 2 cut(s) 425, 825
PleI GAGTC 3 cut(s) 97, 528, 898
PpsI GAGTC 3 cut(s) 97, 528, 898
PpuMI RGGWCCY 2 cut(s) 610, 758
Psp124BI GAGCTC 1 cut(s) 495
Psp5II RGGWCCY 2 cut(s) 610, 758
Psp6I CCWGG 2 cut(s) 300, 1070
PspGI CCWGG 2 cut(s) 300, 1070
PspPI GGNCC 3 cut(s) 287, 610, 758
PspPPI RGGWCCY 2 cut(s) 610, 758
PstI CTGCAG 1 cut(s) 825
PsuI RGATCY 1 cut(s) 898
PvuII CAGCTG 1 cut(s) 841
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 5 cut(s) 162, 768, 857, 921, 963
SatI GCNGC 2 cut(s) 424, 824
Sau3AI GATC 5 cut(s) 97, 215, 436, 898, 1037
Sau96I GGNCC 3 cut(s) 287, 610, 758
SchI GAGTC 3 cut(s) 98, 529, 899
ScrFI CCNGG 3 cut(s) 251, 302, 1072
SduI GDGCHC 3 cut(s) 313, 495, 669
SfaNI GCATC 4 cut(s) 596, 769, 792, 938
SfcI CTRYAG 1 cut(s) 821
SinI GGWCC 3 cut(s) 287, 610, 758
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 4 cut(s) 55, 86, 856, 887
SmoI CTYRAG 4 cut(s) 55, 86, 856, 887
Sse9I AATT 9 cut(s) 63, 203, 291, 451, 634, 695, 864, 960, 990
SsiI CCGC 3 cut(s) 210, 424, 599
SspMI CTAG 3 cut(s) 213, 497, 896
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 249, 300, 1070
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 269, 405, 518, 523
TasI AATT 9 cut(s) 63, 203, 291, 451, 634, 695, 864, 960, 990
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 4 cut(s) 185, 525, 835, 986
Tru1I TTAA 5 cut(s) 162, 768, 857, 921, 963
Tru9I TTAA 5 cut(s) 162, 768, 857, 921, 963
TscAI CASTG 2 cut(s) 514, 958
TseFI GTSAC 3 cut(s) 90, 276, 891
TseI GCWGC 1 cut(s) 823
Tsp45I GTSAC 3 cut(s) 90, 276, 891
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 514, 958
Vha464I CTTAAG 1 cut(s) 856
VpaK11BI GGWCC 3 cut(s) 287, 610, 758
XapI RAATTY 3 cut(s) 63, 203, 634
XceI RCATGY 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 3 cut(s) 213, 497, 896
Zsp2I ATGCAT 2 cut(s) 326, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.