FvH4_3g38230

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000586
Physical Location & Seq
Reverse (-)
32637000 .. 32639359
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38230.t1

Sequence Viewer

Length: 1236 bp
ATGGCCGAATCCGGTCGATGCCGAAAGCGAAACTGGACAGAACTTCCCGACGAGTTAACGGCTGTGATTCTTTCACGGCTGGGAGCGGTGGAGATCCTAATAAGCGCTCAGAAGGCGTGCATGAAGTGGCGCAAAATCTCCAAGGACCCTCTCTTCTGGGGCAAAATTGACATGCGCAACGATGGCACCCTCGAAGAGTTGGACTACGAGGACATGTTCCGCCACGCTTTTGATCGGAGCTCCGGTAATGTCGTCGATATCAATATCGAGCGCTTCGGCACCGATGAACTTCTCGACTTTATCACCAAAAGTTCGAGTACGATCAGGCGCGTCCGACTATTATCGTGCAATAAGGTATGGGATGAGGGATTAAGTACAATGGCTTCGAAACTGCGGTTGTTGGAGGAACTTGACGTTTCGTTGTGTGTGGGTATCTCGCATGAGGCTGTCAAAGCGGTGGGGCGCTCTTGCCCACTTTTGAAGTCGTTCAAGTTCAACAAGGAGTGGTGCAGATTCTCGGATGTTGAGTCTGAATCTGAGGAGTATGACTCTGACTATGGTGGGTTTGACTTTGAGGACATGGATGAAGATTATGCAAACGCTCTTCTTAATGATCCTGATTTTGTTCCTCATTTTGTTCATGCTCCTGCTCCTGTTAGAAAAGATGAGAATGCAGATGCAATTGCTGTAGCAGGAACGATGCAAGGATTACATCACCTCCAGCTTTGTGGGAATAAGCTTACAGATGATGGCTTGAGAAAAATTCTTGATTCTTGCCCTCATCTTGACTCACTTGACCTGCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTGGAAACAAGATGTGCTGAACGGATTAAAAGGTTTTGGCTTCCCCATGATTCTATAGAGGGAAAAGGATTCACCTCTAGATCAGATGGATACTGCTTTAAATGGGTTGAACTTCCAGATGACGTTACTATGTCGATACTGTCACGGCTTGGAACAGTTCATATCCTGGACACTGCTCAGTGGGTATGCATGAAGTGGCGCAAAATCTGCAAGAAAATGAAGTGGAACACCATAGACATGTGCAAAGATTGTACTCCCCGCATTACCTTCGACTTAGATAAGATGTGCCGCCATGTTGTTGATCTTAGCTGTGGTAATTTGGTACATGTGAATGTTGAGGGCTTTATCTCGAATGAGCTCCTGAAGTATATCACTGATAGATCGGACATGAGGACCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

412

Amino Acids

47.19

Weight (kDa)

5.49

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 58 1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 807
AccB1I GGYRCC 2 cut(s) 185, 278
AccBSI CCGCTC 1 cut(s) 86
AccII CGCG 1 cut(s) 330
AciI CCGC 6 cut(s) 86, 220, 394, 455, 1093, 1123
AclWI GGATC 2 cut(s) 88, 608
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 1 cut(s) 1217
AfaI GTAC 4 cut(s) 319, 376, 1087, 1158
AfeI AGCGCT 2 cut(s) 106, 272
AflIII ACRYGT 3 cut(s) 213, 1071, 1159
AgsI TTSAA 5 cut(s) 481, 490, 496, 814, 944
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 5 cut(s) 240, 724, 739, 1143, 1192
AluI AGCT 5 cut(s) 240, 724, 739, 1143, 1192
Alw21I GWGCWC 2 cut(s) 242, 1194
AlwI GGATC 2 cut(s) 88, 608
Aor51HI AGCGCT 2 cut(s) 106, 272
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 8 cut(s) 107, 132, 177, 273, 330, 465, 804, 1035
AspS9I GGNCC 2 cut(s) 145, 1227
AsuHPI GGTGA 3 cut(s) 295, 707, 898
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 2 cut(s) 145, 1227
BanI GGYRCC 2 cut(s) 185, 278
BanII GRGCYC 2 cut(s) 242, 1194
BarI GAAGNNNNNNTAC 2 cut(s) 367, 399
Bbv12I GWGCWC 2 cut(s) 242, 1194
BccI CCATC 3 cut(s) 176, 743, 914
BceAI ACGGC 3 cut(s) 75, 92, 995
BcgI CGANNNNNNTGC 2 cut(s) 1084, 1118
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 917
BfaI CTAG 1 cut(s) 912
BfmI CTRYAG 2 cut(s) 687, 888
BfoI RGCGCY 3 cut(s) 108, 274, 466
BfuAI ACCTGC 1 cut(s) 807
BfuI GTATCC 1 cut(s) 917
BisI GCNGC 1 cut(s) 1123
BlsI GCNGC 1 cut(s) 1124
Bme1390I CCNGG 1 cut(s) 1001
Bme18I GGWCC 2 cut(s) 145, 1227
BmgT120I GGNCC 2 cut(s) 145, 1227
BmiI GGNNCC 3 cut(s) 147, 187, 280
BmrFI CCNGG 1 cut(s) 1001
BmsI GCATC 3 cut(s) 8, 667, 690
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 775
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 11, 242
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 702, 732
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 367, 526, 589
BseMII CTCAG 3 cut(s) 122, 528, 1025
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 554
BseYI CCCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 185, 278
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 2 cut(s) 242, 1194
BsiSI CCGG 2 cut(s) 12, 243
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 242, 1194
Bsp143I GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
BspACI CCGC 6 cut(s) 86, 220, 394, 455, 1093, 1123
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 121, 529, 1024
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 147, 187, 280
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 2 cut(s) 88, 608
BspQI GCTCTTC 1 cut(s) 609
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 185, 278
BsrBI CCGCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 2 cut(s) 975, 991
Bst6I CTCTTC 3 cut(s) 158, 189, 609
BstAPI GCANNNNNTGC 1 cut(s) 1041
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 108, 537, 1011, 1108, 1139
BstF5I GGATG 3 cut(s) 367, 526, 589
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 3 cut(s) 108, 274, 466
BstHHI GCGC 8 cut(s) 107, 132, 177, 273, 330, 465, 804, 1035
BstKTI GATC 7 cut(s) 96, 235, 324, 616, 917, 1138, 1217
BstMBI GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 4 cut(s) 113, 183, 452, 1041
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 4 cut(s) 175, 217, 1075, 1163
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 2 cut(s) 687, 888
BstUI CGCG 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 917
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 367, 526, 589
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 3 cut(s) 1005, 1019, 1206
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 8 cut(s) 107, 132, 177, 273, 330, 465, 804, 1035
Cfr13I GGNCC 2 cut(s) 145, 1227
CseI GACGC 1 cut(s) 319
Csp6I GTAC 4 cut(s) 318, 375, 1086, 1157
CviQI GTAC 4 cut(s) 318, 375, 1086, 1157
DdeI CTNAG 5 cut(s) 108, 537, 1011, 1108, 1139
DpnI GATC 7 cut(s) 95, 234, 323, 615, 916, 1137, 1216
DpnII GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
DraI TTTAAA 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 158, 189, 609
EarI CTCTTC 3 cut(s) 158, 189, 609
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 2 cut(s) 240, 1192
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 242, 1194
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 145, 1227
Eco47III AGCGCT 2 cut(s) 106, 272
Eco53kI GAGCTC 2 cut(s) 240, 1192
Eco57I CTGAAG 1 cut(s) 1217
EcoICRI GAGCTC 2 cut(s) 240, 1192
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 999
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 1025
EcoT38I GRGCYC 2 cut(s) 242, 1194
ErhI CCWWGG 1 cut(s) 141
FauI CCCGC 1 cut(s) 1100
Fnu4HI GCNGC 1 cut(s) 1123
FokI GGATG 3 cut(s) 374, 533, 596
FriOI GRGCYC 2 cut(s) 242, 1194
Fsp4HI GCNGC 1 cut(s) 1123
FspBI CTAG 1 cut(s) 912
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 8 cut(s) 106, 131, 176, 272, 329, 464, 803, 1034
GluI GCNGC 1 cut(s) 1123
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 704
HaeII RGCGCY 3 cut(s) 108, 274, 466
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 12, 243
HgaI GACGC 1 cut(s) 319
HhaI GCGC 8 cut(s) 107, 132, 177, 273, 330, 465, 804, 1035
Hin6I GCGC 8 cut(s) 105, 130, 175, 271, 328, 463, 802, 1033
HinP1I GCGC 8 cut(s) 105, 130, 175, 271, 328, 463, 802, 1033
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 737
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 2 cut(s) 12, 243
HphI GGTGA 3 cut(s) 295, 707, 898
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 9 cut(s) 111, 237, 335, 520, 532, 538, 553, 919, 1219
Hpy188III TCNNGA 9 cut(s) 47, 293, 617, 767, 785, 912, 950, 1183, 1195
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 53, 257
HpyAV CCTTC 2 cut(s) 106, 1111
HpyCH4III ACNGT 2 cut(s) 975, 991
HpyCH4IV ACGT 2 cut(s) 414, 957
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 183, 452, 1041
HpyF3I CTNAG 5 cut(s) 108, 537, 1011, 1108, 1139
HpySE526I ACGT 2 cut(s) 414, 957
HspAI GCGC 8 cut(s) 105, 130, 175, 271, 328, 463, 802, 1033
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 6 cut(s) 83, 237, 245, 649, 655, 1197
LweI GCATC 3 cut(s) 8, 667, 690
MaeI CTAG 1 cut(s) 912
MaeII ACGT 2 cut(s) 414, 957
MaeIII GTNAC 2 cut(s) 958, 975
MalI GATC 7 cut(s) 95, 234, 323, 615, 916, 1137, 1216
MbiI CCGCTC 1 cut(s) 86
MboI GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
MboII GAAGA 4 cut(s) 145, 206, 596, 599
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 242, 1194
MluCI AATT 4 cut(s) 165, 681, 762, 1150
MlyI GAGTC 3 cut(s) 536, 542, 782
MmeI TCCRAC 3 cut(s) 180, 358, 381
Mph1103I ATGCAT 1 cut(s) 1025
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 5 cut(s) 56, 371, 609, 861, 933
MslI CAYNNNNRTG 2 cut(s) 1070, 1164
MspI CCGG 2 cut(s) 12, 243
MspR9I CCNGG 1 cut(s) 1001
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 1001
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 113, 183, 452, 1041
NdeII GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
NlaIV GGNNCC 3 cut(s) 147, 187, 280
NmuCI GTSAC 1 cut(s) 975
NsbI TGCGCA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 1025
NspI RCATGY 4 cut(s) 175, 217, 1075, 1163
NspV TTCGAA 1 cut(s) 386
PciI ACATGT 3 cut(s) 213, 1071, 1159
PciSI GCTCTTC 1 cut(s) 609
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 7 cut(s) 8, 67, 513, 533, 770, 884, 903
PfoI TCCNGGA 1 cut(s) 999
PkrI GCNGC 1 cut(s) 1124
PleI GAGTC 3 cut(s) 535, 542, 782
PpsI GAGTC 3 cut(s) 535, 542, 782
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 3 cut(s) 213, 1071, 1159
Psp124BI GAGCTC 2 cut(s) 242, 1194
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 999
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 3 cut(s) 147, 187, 280
PspPI GGNCC 2 cut(s) 145, 1227
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 4 cut(s) 319, 376, 1087, 1158
RsaNI GTAC 4 cut(s) 318, 375, 1086, 1157
RseI CAYNNNNRTG 2 cut(s) 1070, 1164
SacI GAGCTC 2 cut(s) 242, 1194
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 5 cut(s) 56, 371, 609, 861, 933
SatI GCNGC 1 cut(s) 1123
Sau3AI GATC 7 cut(s) 93, 232, 321, 613, 914, 1135, 1214
Sau96I GGNCC 2 cut(s) 145, 1227
SchI GAGTC 3 cut(s) 536, 542, 782
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 2 cut(s) 242, 1194
SfaNI GCATC 3 cut(s) 8, 667, 690
SfcI CTRYAG 2 cut(s) 687, 888
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 2 cut(s) 145, 1227
SmiMI CAYNNNNRTG 2 cut(s) 1070, 1164
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
Sse9I AATT 4 cut(s) 165, 681, 762, 1150
SsiI CCGC 6 cut(s) 86, 220, 394, 455, 1093, 1123
SspMI CTAG 1 cut(s) 912
SstI GAGCTC 2 cut(s) 242, 1194
StyD4I CCNGG 1 cut(s) 999
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 975, 991
TaiI ACGT 2 cut(s) 417, 960
TasI AATT 4 cut(s) 165, 681, 762, 1150
TatI WGTACW 2 cut(s) 374, 1085
TauI GCSGC 1 cut(s) 1125
TfiI GAWTC 7 cut(s) 8, 67, 513, 533, 770, 884, 903
Tru1I TTAA 5 cut(s) 56, 371, 609, 861, 933
Tru9I TTAA 5 cut(s) 56, 371, 609, 861, 933
TscAI CASTG 3 cut(s) 1012, 1019, 1213
TseFI GTSAC 1 cut(s) 975
Tsp45I GTSAC 1 cut(s) 975
TspDTI ATGAA 7 cut(s) 137, 300, 600, 629, 983, 1040, 1067
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 3 cut(s) 1012, 1019, 1213
VpaK11BI GGWCC 2 cut(s) 145, 1227
XapI RAATTY 1 cut(s) 762
XbaI TCTAGA 1 cut(s) 911
XceI RCATGY 4 cut(s) 175, 217, 1075, 1163
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 1 cut(s) 912
Zsp2I ATGCAT 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.