Rroxscaffold_7G00158140

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000586
Physical Location & Seq
Forward (+)
1684420 .. 1686611
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158140.1

Sequence Viewer

Length: 831 bp
ATGGGCGACACCTCCTCCGCCGCAAAGAGACGGCAGCGAGACTGGACGGAGCTCCCTGACATTGCCACGGAGTCGATACTGTCGCGGCTGGGCGCCATTGACATGTTGGAGAGCGCTCAGAAGGTTTGCATGAACTGGCGCAAAATCTATAAGAACAACACTCGGATTTGGCGCACCGTCGACATGAGAAATGATGGTGATTTTCCATACGACCTGGAGATTATGTGCTGCCACGCCGTTGACCGCAGCCGCGGTGAGCTCGTCGATATTAACATCGAGCACTTCGGCACCGATGAGCTGCTTCACTATATCACTGATAGATCAAGGGGAATCAGGCGCCTCCGACAATTGAATTGCAATGGAGTATCAGGTGAGGGATTGGCTGAAGTGGCTCTGAAACTTCCGTTGTTGGAGGAACTTGACATTACCCTATGCGCTAACATCTCACATGAAGATATAAGAGTGGTTGGGCAGTGTTGCCCTCTTTTGAAATCATTCAAGTTAAACAAAGAGTGCTGTAGATTCTCTGGACATGAGCCTTATTCGTATCATTTTGGTGATTGGTATTCAGATTATTGCTCTCAACAACAAAGTGCAGCTTTTCCTTTTAAAGAGTACAATGGAGACGCATTTGCTATAGCAGAAGCAATGAGAGGTTTACACCACCTCCAGCTTTTTGGGAATAAGTTGAGAGATGATGGCTTGAGAAATATTCTTGATTCTTGTCCCCATCTTTGTTCCCTTGATCTACGACATTGTTTTACTCTTGATCTGGACGGAGACTTGGATAGAATTTGTGGTGAACGAATTGAAAAACTGGCTTCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

276

Amino Acids

31.61

Weight (kDa)

5.59

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 92, 287, 336
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 85, 252
AciI CCGC 6 cut(s) 18, 21, 85, 244, 250, 252
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 2 cut(s) 93, 337
AfaI GTAC 1 cut(s) 617
AfeI AGCGCT 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 4 cut(s) 352, 490, 499, 812
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 5 cut(s) 52, 259, 298, 599, 673
AluI AGCT 5 cut(s) 52, 259, 298, 599, 673
Alw21I GWGCWC 3 cut(s) 54, 261, 282
Alw26I GTCTC 4 cut(s) 22, 33, 618, 774
Aor51HI AGCGCT 1 cut(s) 115
ApeKI GCWGC 5 cut(s) 34, 228, 246, 298, 596
ApoI RAATTY 1 cut(s) 792
Asp700I GAANNNNTTC 1 cut(s) 494
AspLEI GCGC 6 cut(s) 95, 116, 141, 174, 339, 437
AsuHPI GGTGA 5 cut(s) 209, 266, 383, 569, 812
BanI GGYRCC 3 cut(s) 92, 287, 336
BanII GRGCYC 2 cut(s) 54, 261
Bbv12I GWGCWC 3 cut(s) 54, 261, 282
BbvI GCAGC 5 cut(s) 46, 215, 258, 285, 608
BccI CCATC 3 cut(s) 188, 692, 738
BceAI ACGGC 2 cut(s) 47, 221
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 4 cut(s) 22, 33, 618, 774
BfmI CTRYAG 2 cut(s) 517, 636
BfoI RGCGCY 3 cut(s) 96, 117, 340
BisI GCNGC 8 cut(s) 21, 35, 86, 229, 247, 250, 299, 597
BlsI GCNGC 8 cut(s) 22, 36, 87, 230, 248, 251, 300, 598
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 94, 289, 338
BmrFI CCNGG 1 cut(s) 215
BpmI CTGGAG 2 cut(s) 236, 653
BpuEI CTTGAG 1 cut(s) 724
BsaHI GRCGYC 2 cut(s) 93, 337
BsaJI CCNNGG 2 cut(s) 66, 250
BsaXI ACNNNNNCTCC 5 cut(s) 29, 209, 239, 651, 681
Bse1I ACTGG 3 cut(s) 47, 140, 822
Bse3DI GCAATG 3 cut(s) 60, 364, 654
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 66, 250
BseMI GCAATG 3 cut(s) 60, 364, 654
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 47, 140, 822
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 5 cut(s) 46, 215, 258, 285, 608
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 85, 252
BshNI GGYRCC 3 cut(s) 92, 287, 336
BsiHKAI GWGCWC 3 cut(s) 54, 261, 282
BslFI GGGAC 1 cut(s) 711
BsmAI GTCTC 4 cut(s) 22, 33, 618, 774
BsmBI CGTCTC 2 cut(s) 22, 618
BsmFI GGGAC 1 cut(s) 711
Bsp1286I GDGCHC 3 cut(s) 54, 261, 282
Bsp143I GATC 3 cut(s) 320, 745, 769
BspACI CCGC 6 cut(s) 18, 21, 85, 244, 250, 252
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 2 cut(s) 85, 252
BspLI GGNNCC 3 cut(s) 94, 289, 338
BspT107I GGYRCC 3 cut(s) 92, 287, 336
BsrDI GCAATG 3 cut(s) 60, 364, 654
BsrI ACTGG 3 cut(s) 47, 140, 822
BssECI CCNNGG 2 cut(s) 66, 250
BssMI GATC 3 cut(s) 320, 745, 769
BssNI GRCGYC 2 cut(s) 93, 337
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 81, 178
BstACI GRCGYC 2 cut(s) 93, 337
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 2 cut(s) 66, 250
BstFNI CGCG 2 cut(s) 85, 252
BstH2I RGCGCY 3 cut(s) 96, 117, 340
BstHHI GCGC 6 cut(s) 95, 116, 141, 174, 339, 437
BstKTI GATC 3 cut(s) 323, 748, 772
BstMAI GTCTC 4 cut(s) 22, 33, 618, 774
BstMBI GATC 3 cut(s) 320, 745, 769
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 517, 636
BstUI CGCG 2 cut(s) 85, 252
BstV1I GCAGC 5 cut(s) 46, 215, 258, 285, 608
BstXI CCANNNNNNTGG 1 cut(s) 677
BtgI CCRYGG 2 cut(s) 66, 250
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 312, 479
CfoI GCGC 6 cut(s) 95, 116, 141, 174, 339, 437
Cfr42I CCGCGG 1 cut(s) 253
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 616
CviAII CATG 6 cut(s) 103, 130, 184, 449, 533, 828
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 1 cut(s) 117
DinI GGCGCC 2 cut(s) 94, 338
DpnI GATC 3 cut(s) 322, 747, 771
DpnII GATC 3 cut(s) 320, 745, 769
DraI TTTAAA 1 cut(s) 610
EciI GGCGGA 1 cut(s) 7
Ecl136II GAGCTC 2 cut(s) 52, 259
Eco24I GRGCYC 2 cut(s) 54, 261
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 52, 259
Eco57I CTGAAG 1 cut(s) 405
EcoICRI GAGCTC 2 cut(s) 52, 259
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 54, 261
EgeI GGCGCC 2 cut(s) 94, 338
EheI GGCGCC 2 cut(s) 94, 338
Esp3I CGTCTC 2 cut(s) 22, 618
FaeI CATG 6 cut(s) 106, 133, 187, 452, 536, 831
FalI AAGNNNNNCTT 2 cut(s) 583, 615
FaqI GGGAC 1 cut(s) 711
FatI CATG 6 cut(s) 102, 129, 183, 448, 532, 827
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 8 cut(s) 21, 35, 86, 229, 247, 250, 299, 597
FriOI GRGCYC 2 cut(s) 54, 261
Fsp4HI GCNGC 8 cut(s) 21, 35, 86, 229, 247, 250, 299, 597
GlaI GCGC 6 cut(s) 94, 115, 140, 173, 338, 436
GluI GCNGC 8 cut(s) 21, 35, 86, 229, 247, 250, 299, 597
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 236, 653
HaeII RGCGCY 3 cut(s) 96, 117, 340
HgaI GACGC 1 cut(s) 635
HhaI GCGC 6 cut(s) 95, 116, 141, 174, 339, 437
Hin1I GRCGYC 2 cut(s) 93, 337
Hin1II CATG 6 cut(s) 106, 133, 187, 452, 536, 831
Hin6I GCGC 6 cut(s) 93, 114, 139, 172, 337, 435
HinP1I GCGC 6 cut(s) 93, 114, 139, 172, 337, 435
HincII GTYRAC 2 cut(s) 181, 241
HindII GTYRAC 2 cut(s) 181, 241
HinfI GANTC 4 cut(s) 71, 330, 522, 719
HphI GGTGA 5 cut(s) 209, 266, 383, 569, 812
Hpy166II GTNNAC 4 cut(s) 181, 241, 659, 803
Hpy188I TCNGA 5 cut(s) 120, 165, 344, 396, 571
Hpy188III TCNNGA 4 cut(s) 528, 716, 767, 773
Hpy8I GTNNAC 4 cut(s) 181, 241, 659, 803
Hpy99I CGWCG 2 cut(s) 182, 266
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 81, 178
HpyCH4V TGCA 3 cut(s) 129, 357, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 117
Hsp92I GRCGYC 2 cut(s) 93, 337
Hsp92II CATG 6 cut(s) 106, 133, 187, 452, 536, 831
HspAI GCGC 6 cut(s) 93, 114, 139, 172, 337, 435
KasI GGCGCC 2 cut(s) 92, 336
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 3 cut(s) 320, 745, 769
LmnI GCTCC 2 cut(s) 49, 57
Lsp1109I GCAGC 5 cut(s) 46, 215, 258, 285, 608
MalI GATC 3 cut(s) 322, 747, 771
MboI GATC 3 cut(s) 320, 745, 769
MboII GAAGA 1 cut(s) 464
MfeI CAATTG 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 54, 261, 282
MluCI AATT 4 cut(s) 347, 352, 792, 807
Mly113I GGCGCC 2 cut(s) 93, 337
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 3 cut(s) 87, 367, 390
MnlI CCTC 8 cut(s) 22, 25, 350, 367, 406, 492, 647, 677
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 3 cut(s) 270, 503, 609
MslI CAYNNNNRTG 2 cut(s) 101, 555
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 2 cut(s) 85, 252
MwoI GCNNNNNNNGC 1 cut(s) 389
NarI GGCGCC 2 cut(s) 93, 337
NdeII GATC 3 cut(s) 320, 745, 769
NlaIII CATG 6 cut(s) 106, 133, 187, 452, 536, 831
NlaIV GGNNCC 3 cut(s) 94, 289, 338
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 330, 522, 719
PkrI GCNGC 8 cut(s) 22, 36, 87, 230, 248, 251, 300, 598
PleI GAGTC 1 cut(s) 79
PluTI GGCGCC 2 cut(s) 96, 340
PpsI GAGTC 1 cut(s) 79
PscI ACATGT 1 cut(s) 102
Psp124BI GAGCTC 2 cut(s) 54, 261
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 94, 289, 338
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 101, 555
SacI GAGCTC 2 cut(s) 54, 261
SacII CCGCGG 1 cut(s) 253
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 270, 503, 609
SatI GCNGC 8 cut(s) 21, 35, 86, 229, 247, 250, 299, 597
Sau3AI GATC 3 cut(s) 320, 745, 769
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 54, 261, 282
SfcI CTRYAG 2 cut(s) 517, 636
SfoI GGCGCC 2 cut(s) 94, 338
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 101, 555
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 4 cut(s) 347, 352, 792, 807
SsiI CCGC 6 cut(s) 18, 21, 85, 244, 250, 252
SspDI GGCGCC 2 cut(s) 92, 336
SspI AATATT 1 cut(s) 712
SstI GAGCTC 2 cut(s) 54, 261
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 81, 178
TaqI TCGA 4 cut(s) 74, 180, 264, 276
TasI AATT 4 cut(s) 347, 352, 792, 807
TatI WGTACW 1 cut(s) 615
TauI GCSGC 3 cut(s) 23, 88, 252
TfiI GAWTC 3 cut(s) 330, 522, 719
Tru1I TTAA 3 cut(s) 270, 503, 609
Tru9I TTAA 3 cut(s) 270, 503, 609
TscAI CASTG 2 cut(s) 319, 479
TseI GCWGC 5 cut(s) 34, 228, 246, 298, 596
TspDTI ATGAA 2 cut(s) 146, 465
TspGWI ACGGA 4 cut(s) 62, 83, 393, 792
TspRI CASTG 2 cut(s) 319, 479
XapI RAATTY 1 cut(s) 792
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.