Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Reverse (-)

66736408 .. 66737969

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTGGTTTACGCCACCTCCAGCTTTTCGGGAATAAGTTGACAAATGATGGCTTGAGAAATATTCTTGATTCTTGTCCTCATCTTTGTTCACTTGATCTACGCCACTGTTTCATTCTTAATCTGGATGGAGATTTGGGAAGAATATGTGCTGAACGAATTGAAAAACTGTGGCTGCCACATGATTCTACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGGTTACTGCTTTAAATGGACAGAGCTCCCAGACAATATTACAAGATCAATACTGTCACGGCTGGGAGCAATTGAGATCCTGGCCACTGCTCAGAAAGTGTGCTCAAAGTGGTTCTACATCTGCAAGGACCCATTGATGTGGCGCACCATCGACATGCACAATAAGTTTGATATTTCCAACTACAGGCCCTTCTACTTGCATGACTTGTGTGAAGATGCCATTGATCGTAGCTGTGGTAATTTGGTTGATATCAATGTTGAGAACTTCGGTACCAATTTTCTCCTAGATTATCTTGCAGAGAGGTCAAGAGGACTCAAACGCCTCCGTTTAGTGGGTTCTCATAGAATTACAGACGAGGGATTCCGTAAAGTGGCTTCAAAATTTCCAATGTTGGAGCACCTTGACATTACATTATTCGAGGATATCTCACATGAAACTCTAGCATTGGTTGGGCGATCATGCCCTCTTTTGAAATCATTCAAGTTTAACAAACAATGGTTCAGAGATGACTGCTGCGATAAGGCTGAGCGTAATGACTGTGCATTTGCTATAGCAGGAACCATGCACGGATTACACCACCTCATGCTTTTCAGGAATCAACTGTCTAACAAAGGTTTGTCTGCAATTCTTGATGGCTGTCCTCATCTTGAGTCACTAGATCTACGACAGTGTTTCAATCTTAAATTGTGGGGAAAGACGGGTAGAAGATGTGCTGAACGAATTCAAAAGTTGTGGCTTCCCCAGGACTCCATCGACGACATTGACCCATCATATGATCTGGATGCTGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

338

Amino Acids

39.09

Weight (kDa)

6.36

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	80 - 126	5.6e-09	F-box-like
F-box	PF00646	80 - 122	3.8e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	203, 602, 942
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	405, 553, 592
AgsI	TTSAA	6 cut(s)	164, 600, 694, 703, 898, 947
AjnI	CCWGG	2 cut(s)	300, 963
AluBI	AGCT	3 cut(s)	25, 247, 453
AluI	AGCT	3 cut(s)	25, 247, 453
Alw21I	GWGCWC	3 cut(s)	249, 326, 621
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	303, 407
ApeKI	GCWGC	2 cut(s)	175, 735
ApoI	RAATTY	3 cut(s)	203, 602, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
Asp700I	GAANNNNTTC	2 cut(s)	698, 942
Asp718I	GGTACC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	349, 408
AvaII	GGWCC	1 cut(s)	349
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	580, 612
Bbv12I	GWGCWC	3 cut(s)	249, 326, 621
BbvI	GCAGC	2 cut(s)	162, 722
BccI	CCATC	6 cut(s)	44, 122, 377, 848, 980, 997
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	302, 965
BfaI	CTAG	4 cut(s)	213, 506, 662, 878
BfmI	CTRYAG	2 cut(s)	403, 771
BglII	AGATCT	2 cut(s)	215, 880
BisI	GCNGC	2 cut(s)	176, 736
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	2 cut(s)	177, 737
Bme1390I	CCNGG	2 cut(s)	302, 965
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	349, 408
BmiI	GGNNCC	3 cut(s)	351, 493, 781
BmrFI	CCNGG	2 cut(s)	302, 965
BmsI	GCATC	2 cut(s)	427, 994
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	1 cut(s)	5
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	76, 890
BsaJI	CCNNGG	1 cut(s)	963
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 553, 592
BseBI	CCWGG	2 cut(s)	302, 965
BseDI	CCNNGG	1 cut(s)	963
BseGI	GGATG	2 cut(s)	133, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	405, 553, 592
BseMII	CTCAG	3 cut(s)	183, 326, 738
BseXI	GCAGC	2 cut(s)	162, 722
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	305, 409
BshNI	GGYRCC	1 cut(s)	491
BsiHKAI	GWGCWC	3 cut(s)	249, 326, 621
BslI	CCNNNNNNNGG	3 cut(s)	405, 553, 592
BsnI	GGCC	2 cut(s)	305, 409
Bsp1286I	GDGCHC	3 cut(s)	249, 326, 621
Bsp143I	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
Bsp1720I	GCTNAGC	1 cut(s)	747
BspANI	GGCC	2 cut(s)	305, 409
BspCNI	CTCAG	3 cut(s)	184, 325, 739
BspLI	GGNNCC	3 cut(s)	351, 493, 781
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	963
BssMI	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
Bst2UI	CCWGG	2 cut(s)	302, 965
Bst4CI	ACNGT	6 cut(s)	110, 171, 276, 761, 825, 891
BstDEI	CTNAG	3 cut(s)	192, 312, 747
BstF5I	GGATG	2 cut(s)	133, 1009
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	8 cut(s)	100, 218, 269, 300, 448, 680, 883, 1000
BstMBI	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
BstNI	CCWGG	2 cut(s)	302, 965
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	300, 963
BstSFI	CTRYAG	2 cut(s)	403, 771
BstV1I	GCAGC	2 cut(s)	162, 722
BstX2I	RGATCY	3 cut(s)	215, 297, 880
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	3 cut(s)	215, 297, 880
BsuRI	GGCC	2 cut(s)	305, 409
BtsCI	GGATG	2 cut(s)	133, 1009
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	106, 306, 896
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	349, 408
Csp6I	GTAC	1 cut(s)	492
CspCI	CAANNNNNGTGG	2 cut(s)	935, 970
CviAII	CATG	7 cut(s)	182, 376, 422, 653, 681, 784, 805
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	3 cut(s)	192, 312, 747
DpnI	GATC	8 cut(s)	99, 217, 268, 299, 447, 679, 882, 999
DpnII	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
DraI	TTTAAA	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	2 cut(s)	472, 646
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	2 cut(s)	349, 408
EcoRI	GAATTC	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	300, 963
EcoRV	GATATC	2 cut(s)	472, 646
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	7 cut(s)	185, 379, 425, 656, 684, 787, 808
FatI	CATG	7 cut(s)	181, 375, 421, 652, 680, 783, 804
FauNDI	CATATG	1 cut(s)	994
Fnu4HI	GCNGC	2 cut(s)	176, 736
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	176, 736
FspBI	CTAG	4 cut(s)	213, 506, 662, 878
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	2 cut(s)	176, 736
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	305, 409
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	7 cut(s)	185, 379, 425, 656, 684, 787, 808
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	7 cut(s)	71, 185, 534, 582, 817, 872, 968
Hpy166II	GTNNAC	3 cut(s)	11, 42, 92
Hpy188I	TCNGA	3 cut(s)	220, 315, 725
Hpy188III	TCNNGA	8 cut(s)	31, 68, 125, 528, 814, 851, 869, 1001
Hpy8I	GTNNAC	3 cut(s)	11, 42, 92
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	2 cut(s)	215, 421
HpyCH4III	ACNGT	6 cut(s)	110, 171, 276, 761, 825, 891
HpyCH4V	TGCA	7 cut(s)	345, 379, 421, 518, 764, 787, 845
HpyF3I	CTNAG	3 cut(s)	192, 312, 747
Hsp92II	CATG	7 cut(s)	185, 379, 425, 656, 684, 787, 808
HspAI	GCGC	1 cut(s)	364
KpnI	GGTACC	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
LmnI	GCTCC	3 cut(s)	252, 287, 616
Lsp1109I	GCAGC	2 cut(s)	162, 722
LweI	GCATC	2 cut(s)	427, 994
MaeI	CTAG	4 cut(s)	213, 506, 662, 878
MaeIII	GTNAC	3 cut(s)	224, 276, 873
MalI	GATC	8 cut(s)	99, 217, 268, 299, 447, 679, 882, 999
MboI	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
MboII	GAAGA	3 cut(s)	153, 446, 939
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	3 cut(s)	215, 297, 880
MhlI	GDGCHC	3 cut(s)	249, 326, 621
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	3 cut(s)	528, 881, 962
MmeI	TCCRAC	2 cut(s)	423, 594
Mox20I	TGGCCA	1 cut(s)	305
MroXI	GAANNNNTTC	2 cut(s)	698, 942
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	4 cut(s)	120, 234, 708, 903
MslI	CAYNNNNRTG	2 cut(s)	358, 374
Msp20I	TGGCCA	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	302, 965
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	302, 965
NdeI	CATATG	1 cut(s)	994
NdeII	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
NlaIII	CATG	7 cut(s)	185, 379, 425, 656, 684, 787, 808
NlaIV	GGNNCC	3 cut(s)	351, 493, 781
NmuCI	GTSAC	2 cut(s)	276, 873
NspI	RCATGY	1 cut(s)	379
PdmI	GAANNNNTTC	2 cut(s)	698, 942
PfeI	GAWTC	4 cut(s)	71, 185, 582, 817
PkrI	GCNGC	2 cut(s)	177, 737
PleI	GAGTC	3 cut(s)	528, 880, 962
PpsI	GAGTC	3 cut(s)	528, 880, 962
PpuMI	RGGWCCY	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	300, 963
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	300, 963
PspN4I	GGNNCC	3 cut(s)	351, 493, 781
PspPI	GGNCC	2 cut(s)	349, 408
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	215, 297, 880
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	2 cut(s)	358, 374
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	120, 234, 708, 903
SatI	GCNGC	2 cut(s)	176, 736
Sau3AI	GATC	8 cut(s)	97, 215, 266, 297, 445, 677, 880, 997
Sau96I	GGNCC	2 cut(s)	349, 408
SchI	GAGTC	3 cut(s)	528, 881, 962
ScrFI	CCNGG	2 cut(s)	302, 965
SduI	GDGCHC	3 cut(s)	249, 326, 621
SetI	ASST	9 cut(s)	21, 27, 226, 249, 455, 527, 624, 804, 838
SfaNI	GCATC	2 cut(s)	427, 994
SfcI	CTRYAG	2 cut(s)	403, 771
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	358, 374
SmlI	CTYRAG	2 cut(s)	55, 869
SmoI	CTYRAG	2 cut(s)	55, 869
SspI	AATATT	2 cut(s)	64, 259
SspMI	CTAG	4 cut(s)	213, 506, 662, 878
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	300, 963
TaaI	ACNGT	6 cut(s)	110, 171, 276, 761, 825, 891
TaqI	TCGA	3 cut(s)	372, 639, 975
TfiI	GAWTC	4 cut(s)	71, 185, 582, 817
Tru1I	TTAA	4 cut(s)	120, 234, 708, 903
Tru9I	TTAA	4 cut(s)	120, 234, 708, 903
TscAI	CASTG	3 cut(s)	113, 313, 896
TseFI	GTSAC	2 cut(s)	276, 873
TseI	GCWGC	2 cut(s)	175, 735
Tsp45I	GTSAC	2 cut(s)	276, 873
TspDTI	ATGAA	2 cut(s)	103, 669
TspGWI	ACGGA	3 cut(s)	536, 575, 804
TspRI	CASTG	3 cut(s)	113, 313, 896
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	3 cut(s)	203, 602, 942
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	2 cut(s)	698, 942
XspI	CTAG	4 cut(s)	213, 506, 662, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.