Rh5DG116400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000586
Physical Location & Seq
Forward (+)
10545178 .. 10548641
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG116400.1

Sequence Viewer

Length: 1614 bp
ATGCCTTGGTATGTGCTAGCGTATTTATTTAAAACCTTTTGTAGTTCAAGTGGCATCAGACACCTCCGACTGTTGTCTTGCGAGGAGGAAATAACAACTCAGGGATTGGCGAAAGTGGCTTCCAAACTTCCTCTTTTGGAGGAACTTGAGATTACATTGTGCTTTAATATCTCACATGAAGCTCTAGATGTGGTTGGGCGCTCTTGCCCTCTTTTGAAATCATTCAAGTTGAACAAAGAGTGGTGCACATATTCAGATATGGAGGATTGGTTTGAGGATGATGCACCTTCACAAGTTGAAGACGATGTAGATGCGCTGGCCATAGCAAGATCTATGCATGGTTTACACCACCTCCAGCTTTACGGGAATAAGCTTACAGATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCGTTGTTTCAATCTTAATATGGGTGGAGATTTGGAAATAAGACTTGAACAAATTAAAAAATTGTGGCTTCCTCATGATTCCACCAAGGGAAAAGGCTTTGCCGCTGATTCTGACCATTTCTGCTTTAAATGGACGGAGCTCCCAGATGATGTTACCTTGTCAATCCTGTCACGGGTTGGAGCAATTGATATCTTAGTGAATGCTCAGAAGGTTTGCATGAAGTGGCGCAGAATCTGCAAGGACCCTGTCATGTGGCGTACCATTGACATGCGAAATCGTGGTTATGAGGTGTATGACTTGGGCAAGATGTGTCGCCATGCAATTGATCGTAGCTGCGGTAATTTGGATGATATTAGTATTGACCATTTTGGCACCAATCGGCTCCTCAAGTACATCACTGACAGTTCAAGCAGAATCAAACGCCTCCGACTAGCACTTTGCAAGAGAATATCAGATCAAGGAGTGATTGAAGTGGCCATGAAACTTCCGCTTCTGGAGGACCTTGAAATTTCATTATGCCGACTCTCACGCAAATCCCTAGAACTAGTTGGTCGCTCTTGCCCTCTTTTGAAATCTTTTAAATTGAACCGGCGAACAGATGATGATTATGATGAGTCCATTGGCTTTACAAAGAAAAATGATGAAGCACTTGCTATTGCAAGAACAATGCATGGTTTACACCACCTTCAGCTTTTTGGGAACGAGTTGACTAATGAGGGCTTGAAGGAAATTCTTGATGGTTGTCCTCATCTTGAGTCACTCGACTTGCGATGTTGTGAGAACCTTAATCTGAAGGGTCCTTTGGGAATAAGATGTTCTGAGCAGATTAAAAAATTGTGGCTTCCTCGTGATTCTATTGCTGACTATGACTTCCGTTTTACTGTTCGTGGTTATGGATCCCCACGTAAGTTTACTGTATCTGATCTAATTGGATTTCCCAGAATTGATAATGATTATGACGAATATGGCTATGGTAATTATGGTGGATGGTGCTCCGATGATAGTGATTGGTATGATGATTTCACTAAACCTCCATTAGAAGAGCTTCTTGGACTTGATGAGGAAGATCTTGAATTTTTCGGACTTGCGAAGGGACGTAGAAGGGATTACCTTGAAGATTTTTATGATTTTGAAGATTATGGGGATTATGAAAGTGATGATGAGATGTTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

537

Amino Acids

62.08

Weight (kDa)

5.06

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 190 - 236 4.4e-10 F-box-like
F-box PF00646 190 - 232 3e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 809
AciI CCGC 3 cut(s) 540, 774, 926
AclWI GGATC 2 cut(s) 1329, 1342
AcoI YGGCCR 2 cut(s) 318, 912
AcsI RAATTY 4 cut(s) 396, 945, 1167, 1511
AcuI CTGAAG 2 cut(s) 1109, 1250
AfaI GTAC 2 cut(s) 697, 830
AfiI CCNNNNNNNGG 1 cut(s) 610
AhlI ACTAGT 1 cut(s) 982
AjuI GAANNNNNNNTTGG 4 cut(s) 1223, 1255, 1470, 1502
AluBI AGCT 7 cut(s) 182, 358, 373, 577, 771, 1129, 1483
AluI AGCT 7 cut(s) 182, 358, 373, 577, 771, 1129, 1483
Alw21I GWGCWC 3 cut(s) 248, 579, 1433
Alw44I GTGCAC 1 cut(s) 244
AlwI GGATC 2 cut(s) 1329, 1342
AlwNI CAGNNNCTG 1 cut(s) 672
AoxI GGCC 2 cut(s) 318, 912
ApaLI GTGCAC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 771
ApoI RAATTY 4 cut(s) 396, 945, 1167, 1511
ArsI GACNNNNNNTTYG 2 cut(s) 858, 890
Asp700I GAANNNNTTC 2 cut(s) 221, 1482
AspLEI GCGC 4 cut(s) 201, 316, 438, 666
AspS9I GGNCC 3 cut(s) 679, 937, 1235
AsuNHI GCTAGC 1 cut(s) 16
AvaII GGWCC 3 cut(s) 679, 937, 1235
BaeGI GKGCMC 1 cut(s) 248
BalI TGGCCA 2 cut(s) 320, 914
BamHI GGATCC 1 cut(s) 1334
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 579
BauI CACGAG 1 cut(s) 1284
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 3 cut(s) 248, 579, 1433
BbvI GCAGC 1 cut(s) 758
BccI CCATC 3 cut(s) 377, 1169, 1419
BceAI ACGGC 1 cut(s) 423
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcuI ACTAGT 1 cut(s) 982
BfaI CTAG 5 cut(s) 17, 185, 869, 977, 983
BfoI RGCGCY 1 cut(s) 202
BglII AGATCT 2 cut(s) 329, 1504
BisI GCNGC 2 cut(s) 540, 772
BlsI GCNGC 2 cut(s) 541, 773
Bme18I GGWCC 3 cut(s) 679, 937, 1235
BmgT120I GGNCC 3 cut(s) 679, 937, 1235
BmiI GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
BmsI GCATC 3 cut(s) 63, 271, 301
BmtI GCTAGC 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 338, 953
BpuEI CTTGAG 5 cut(s) 167, 409, 440, 809, 1211
BsaAI YACGTR 1 cut(s) 1343
BsaJI CCNNGG 2 cut(s) 5, 522
BsaXI ACNNNNNCTCC 6 cut(s) 254, 284, 336, 366, 1453, 1483
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 1026
BseDI CCNNGG 2 cut(s) 5, 522
BseGI GGATG 3 cut(s) 283, 790, 1430
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 113, 656, 1248
BseRI GAGGAG 2 cut(s) 98, 812
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 1 cut(s) 758
BshFI GGCC 2 cut(s) 320, 914
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 3 cut(s) 248, 579, 1433
BsiSI CCGG 1 cut(s) 1027
BslFI GGGAC 1 cut(s) 1545
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 1545
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 320, 914
Bsp1286I GDGCHC 3 cut(s) 248, 579, 1433
Bsp143I GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
BspACI CCGC 3 cut(s) 540, 774, 926
BspANI GGCC 2 cut(s) 320, 914
BspCNI CTCAG 3 cut(s) 112, 655, 1249
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
BspOI GCTAGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 1329, 1342
BspQI GCTCTTC 1 cut(s) 1473
BspT107I GGYRCC 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 1026
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 2 cut(s) 5, 522
BssMI GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
BssSI CACGAG 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 5, 522
Bst2BI CACGAG 1 cut(s) 1284
Bst4CI ACNGT 4 cut(s) 72, 842, 1321, 1354
Bst6I CTCTTC 1 cut(s) 1473
BstAPI GCANNNNNTGC 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 1343
BstC8I GCNNGC 2 cut(s) 18, 318
BstDEI CTNAG 4 cut(s) 99, 631, 642, 1257
BstF5I GGATG 3 cut(s) 283, 790, 1430
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 4 cut(s) 201, 316, 438, 666
BstKTI GATC 7 cut(s) 332, 433, 766, 895, 1337, 1363, 1507
BstMBI GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
BstMWI GCNNNNNNNGC 2 cut(s) 116, 672
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 758
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 329, 1334, 1504
BstYI RGATCY 3 cut(s) 329, 1334, 1504
BsuRI GGCC 2 cut(s) 320, 914
BtgZI GCGATG 1 cut(s) 1222
BtsCI GGATG 3 cut(s) 283, 790, 1430
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 2 cut(s) 18, 318
CaiI CAGNNNCTG 1 cut(s) 672
CciI TCATGA 1 cut(s) 511
CfoI GCGC 4 cut(s) 201, 316, 438, 666
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 3 cut(s) 679, 937, 1235
Csp6I GTAC 2 cut(s) 696, 829
CviAII CATG 9 cut(s) 176, 338, 512, 655, 688, 706, 755, 916, 1109
CviQI GTAC 2 cut(s) 696, 829
DdeI CTNAG 4 cut(s) 99, 631, 642, 1257
DpnI GATC 7 cut(s) 331, 432, 765, 894, 1336, 1362, 1506
DpnII GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
DraI TTTAAA 3 cut(s) 31, 565, 1018
EaeI YGGCCR 2 cut(s) 318, 912
Eam1104I CTCTTC 1 cut(s) 1473
EarI CTCTTC 1 cut(s) 1473
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 2 cut(s) 5, 522
Eco24I GRGCYC 1 cut(s) 579
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 3 cut(s) 679, 937, 1235
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 1109, 1250
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 3 cut(s) 679, 937, 1235
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 5, 522
EcoT22I ATGCAT 2 cut(s) 339, 1110
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 2 cut(s) 5, 522
FaeI CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
FalI AAGNNNNNCTT 2 cut(s) 1470, 1502
FaqI GGGAC 1 cut(s) 1545
FatI CATG 9 cut(s) 175, 337, 511, 654, 687, 705, 754, 915, 1108
Fnu4HI GCNGC 2 cut(s) 540, 772
FokI GGATG 3 cut(s) 290, 797, 1437
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 540, 772
FspBI CTAG 5 cut(s) 17, 185, 869, 977, 983
GlaI GCGC 4 cut(s) 200, 315, 437, 665
GluI GCNGC 2 cut(s) 540, 772
GsuI CTGGAG 2 cut(s) 338, 953
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 2 cut(s) 320, 914
HapII CCGG 1 cut(s) 1027
HhaI GCGC 4 cut(s) 201, 316, 438, 666
Hin1II CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
Hin6I GCGC 4 cut(s) 199, 314, 436, 664
HinP1I GCGC 4 cut(s) 199, 314, 436, 664
HincII GTYRAC 1 cut(s) 1146
HindII GTYRAC 1 cut(s) 1146
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 9 cut(s) 422, 515, 545, 669, 852, 960, 1052, 1193, 1289
HpaII CCGG 1 cut(s) 1027
Hpy166II GTNNAC 5 cut(s) 246, 344, 1115, 1146, 1350
Hpy188III TCNNGA 9 cut(s) 185, 401, 419, 512, 932, 1172, 1190, 1286, 1508
Hpy8I GTNNAC 5 cut(s) 246, 344, 1115, 1146, 1350
HpyAV CCTTC 7 cut(s) 297, 640, 1133, 1156, 1225, 1522, 1533
HpyCH4III ACNGT 4 cut(s) 72, 842, 1321, 1354
HpyCH4IV ACGT 2 cut(s) 1342, 1534
HpyCH4V TGCA 9 cut(s) 246, 284, 337, 654, 675, 758, 879, 1097, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 672
HpyF3I CTNAG 4 cut(s) 99, 631, 642, 1257
HpySE526I ACGT 2 cut(s) 1342, 1534
Hsp92II CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
HspAI GCGC 4 cut(s) 199, 314, 436, 664
Kzo9I GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
LguI GCTCTTC 1 cut(s) 1473
LmnI GCTCC 5 cut(s) 574, 582, 617, 825, 1436
LpnPI CCDG 9 cut(s) 86, 302, 368, 594, 617, 696, 917, 1040, 1390
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 3 cut(s) 63, 271, 301
MaeI CTAG 5 cut(s) 17, 185, 869, 977, 983
MaeII ACGT 2 cut(s) 1342, 1534
MaeIII GTNAC 4 cut(s) 423, 589, 606, 1194
MalI GATC 7 cut(s) 331, 432, 765, 894, 1336, 1362, 1506
MboI GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
MboII GAAGA 5 cut(s) 311, 1490, 1514, 1565, 1583
MfeI CAATTG 2 cut(s) 621, 759
MflI RGATCY 3 cut(s) 329, 1334, 1504
MhlI GDGCHC 3 cut(s) 248, 579, 1433
MlsI TGGCCA 2 cut(s) 320, 914
MluNI TGGCCA 2 cut(s) 320, 914
MlyI GAGTC 4 cut(s) 431, 954, 1061, 1202
MmeI TCCRAC 3 cut(s) 91, 595, 889
Mox20I TGGCCA 2 cut(s) 320, 914
Mph1103I ATGCAT 2 cut(s) 339, 1110
MroXI GAANNNNTTC 2 cut(s) 221, 1482
MscI TGGCCA 2 cut(s) 320, 914
MseI TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 2 cut(s) 320, 914
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 1027
MunI CAATTG 2 cut(s) 621, 759
Mva1269I GAATGC 1 cut(s) 643
MwoI GCNNNNNNNGC 2 cut(s) 116, 672
NdeII GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 9 cut(s) 179, 341, 515, 658, 691, 709, 758, 919, 1112
NlaIV GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
NmuCI GTSAC 3 cut(s) 423, 606, 1194
NsiI ATGCAT 2 cut(s) 339, 1110
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 1473
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 2 cut(s) 221, 1482
PfeI GAWTC 5 cut(s) 515, 545, 669, 852, 1289
PflFI GACNNNGTC 1 cut(s) 683
PkrI GCNGC 2 cut(s) 541, 773
PleI GAGTC 4 cut(s) 430, 954, 1060, 1201
PpsI GAGTC 4 cut(s) 430, 954, 1060, 1201
Ppu21I YACGTR 1 cut(s) 1343
PpuMI RGGWCCY 3 cut(s) 679, 937, 1235
PshAI GACNNNNGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 579
Psp5II RGGWCCY 3 cut(s) 679, 937, 1235
PspN4I GGNNCC 5 cut(s) 681, 811, 821, 1236, 1336
PspPI GGNCC 3 cut(s) 679, 937, 1235
PspPPI RGGWCCY 3 cut(s) 679, 937, 1235
PstNI CAGNNNCTG 1 cut(s) 672
PsuI RGATCY 3 cut(s) 329, 1334, 1504
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 2 cut(s) 697, 830
RsaNI GTAC 2 cut(s) 696, 829
RseI CAYNNNNRTG 1 cut(s) 704
SacI GAGCTC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 1473
SaqAI TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
SatI GCNGC 2 cut(s) 540, 772
Sau3AI GATC 7 cut(s) 329, 430, 763, 892, 1334, 1360, 1504
Sau96I GGNCC 3 cut(s) 679, 937, 1235
SchI GAGTC 4 cut(s) 431, 954, 1061, 1202
SduI GDGCHC 3 cut(s) 248, 579, 1433
SfaNI GCATC 3 cut(s) 63, 271, 301
SinI GGWCC 3 cut(s) 679, 937, 1235
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 5 cut(s) 146, 388, 419, 824, 1190
SmoI CTYRAG 5 cut(s) 146, 388, 419, 824, 1190
SpeI ACTAGT 1 cut(s) 982
SsiI CCGC 3 cut(s) 540, 774, 926
SspMI CTAG 5 cut(s) 17, 185, 869, 977, 983
SstI GAGCTC 1 cut(s) 579
StyI CCWWGG 2 cut(s) 5, 522
TaaI ACNGT 4 cut(s) 72, 842, 1321, 1354
TaiI ACGT 2 cut(s) 1345, 1537
TaqI TCGA 1 cut(s) 1200
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 5 cut(s) 515, 545, 669, 852, 1289
Tru1I TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
Tru9I TTAA 8 cut(s) 30, 165, 453, 492, 564, 1017, 1224, 1266
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 3 cut(s) 423, 606, 1194
TseI GCWGC 1 cut(s) 771
Tsp45I GTSAC 3 cut(s) 423, 606, 1194
TspDTI ATGAA 6 cut(s) 192, 671, 932, 939, 1095, 1602
TspGWI ACGGA 2 cut(s) 587, 1301
TspRI CASTG 1 cut(s) 841
Tth111I GACNNNGTC 1 cut(s) 683
VneI GTGCAC 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 679, 937, 1235
XapI RAATTY 4 cut(s) 396, 945, 1167, 1511
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 709
XmnI GAANNNNTTC 2 cut(s) 221, 1482
XspI CTAG 5 cut(s) 17, 185, 869, 977, 983
Zsp2I ATGCAT 2 cut(s) 339, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.