Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Reverse (-)

65716169 .. 65717375

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG501100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGGTGCACCATCGACATGCACAATAAGTTTGATATTTCCAACTACAGGCCCTTCTACTTGCATGACTTGTGTGGAGATGCCATTGATCGTAGCTGTGGTAATTTGGTTGATATCAATGTTGAGAACTTCGGTACCAATTTTCTCCTAGATTATCTTGCAGAGAGGTCAAGAGGACTCAAACGCCTCCGTTTAGTGGGTTCTCATAGAATTACAGACGAGGGATTCCGTAAAGTGGCTTCAAAATTTCCAATGTTGGAGCACCTTGACATTACATTATTCGAGGATATCTCACATGAAACTCTAGCATTGGTTGGGCGATCATGCCCTCTTTTGAAATCATTCAAGTTTAACAAACAATGGTTCAGAGATGACTGCTGCGATAAGGCTGAGCGTAATGACTGTGCATTTGCTATAGCAGGAACCATGCACGGGTTACACCACCTCATGCTTTTCAGGAATCAACTGTCTAACAAAGGTTTGTCTGCAATTCTTGATGGCTGTCCTCATCTTGAGTCACTAGATCTACGACAGTGTTTCAATCTTAAATTGTGGGGAAAGACGGGTAGAAGATGTGCTGAACGAATTCAAAAGTTGTGGCTTCCCCAGGACTCCATCGACGACATTGACCCATCATATGATCTGGATGCTGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

219

Amino Acids

25.39

Weight (kDa)

6.13

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	245, 585
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	4 cut(s)	48, 196, 235, 432
AgsI	TTSAA	5 cut(s)	243, 337, 346, 541, 590
AjnI	CCWGG	1 cut(s)	606
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	2 cut(s)	11, 264
Alw44I	GTGCAC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	50
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	245, 585
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	2 cut(s)	341, 585
Asp718I	GGTACC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	118, 151
BanI	GGYRCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
Bbv12I	GWGCWC	2 cut(s)	11, 264
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	4 cut(s)	20, 491, 623, 640
BciT130I	CCWGG	1 cut(s)	608
BfaI	CTAG	3 cut(s)	149, 305, 521
BfmI	CTRYAG	2 cut(s)	46, 414
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	136, 424
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	70, 637
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 196, 235, 432
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	4 cut(s)	48, 196, 235, 432
BseMII	CTCAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	11, 264
BslI	CCNNNNNNNGG	4 cut(s)	48, 196, 235, 432
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	11, 264
Bsp143I	GATC	4 cut(s)	88, 320, 523, 640
Bsp1720I	GCTNAGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	136, 424
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	4 cut(s)	88, 320, 523, 640
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	3 cut(s)	404, 468, 534
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	652
BstKTI	GATC	4 cut(s)	91, 323, 526, 643
BstMBI	GATC	4 cut(s)	88, 320, 523, 640
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	2 cut(s)	46, 414
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	6 cut(s)	19, 65, 296, 324, 427, 448
CviJI	RGCY	6 cut(s)	52, 96, 239, 389, 501, 601
CviKI_1	RGCY	6 cut(s)	52, 96, 239, 389, 501, 601
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	4 cut(s)	90, 322, 525, 642
DpnII	GATC	4 cut(s)	88, 320, 523, 640
Eco32I	GATATC	2 cut(s)	115, 289
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	606
EcoRV	GATATC	2 cut(s)	115, 289
FaeI	CATG	6 cut(s)	22, 68, 299, 327, 430, 451
FatI	CATG	6 cut(s)	18, 64, 295, 323, 426, 447
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	3 cut(s)	149, 305, 521
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	52
Hin1II	CATG	6 cut(s)	22, 68, 299, 327, 430, 451
HinfI	GANTC	5 cut(s)	177, 225, 460, 515, 611
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	5 cut(s)	171, 457, 494, 512, 644
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	404, 468, 534
HpyCH4V	TGCA	7 cut(s)	9, 22, 64, 161, 407, 430, 488
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	6 cut(s)	22, 68, 299, 327, 430, 451
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	88, 320, 523, 640
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	34, 405, 442, 593, 620, 629
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	70, 637
MaeI	CTAG	3 cut(s)	149, 305, 521
MaeIII	GTNAC	2 cut(s)	435, 516
MalI	GATC	4 cut(s)	90, 322, 525, 642
MboI	GATC	4 cut(s)	88, 320, 523, 640
MboII	GAAGA	1 cut(s)	582
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	2 cut(s)	11, 264
MluCI	AATT	7 cut(s)	103, 139, 210, 245, 489, 548, 585
MlyI	GAGTC	3 cut(s)	171, 524, 605
MmeI	TCCRAC	2 cut(s)	66, 237
MnlI	CCTC	8 cut(s)	159, 167, 197, 214, 277, 339, 455, 516
MroXI	GAANNNNTTC	2 cut(s)	341, 585
MseI	TTAA	2 cut(s)	351, 546
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	88, 320, 523, 640
NlaIII	CATG	6 cut(s)	22, 68, 299, 327, 430, 451
NlaIV	GGNNCC	2 cut(s)	136, 424
NmuCI	GTSAC	1 cut(s)	516
NspI	RCATGY	1 cut(s)	22
PdmI	GAANNNNTTC	2 cut(s)	341, 585
PfeI	GAWTC	2 cut(s)	225, 460
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	3 cut(s)	171, 523, 605
PpsI	GAGTC	3 cut(s)	171, 523, 605
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	136, 424
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	351, 546
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	4 cut(s)	88, 320, 523, 640
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	3 cut(s)	171, 524, 605
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	11, 264
SetI	ASST	5 cut(s)	98, 170, 267, 447, 481
SfaNI	GCATC	2 cut(s)	70, 637
SfcI	CTRYAG	2 cut(s)	46, 414
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	7 cut(s)	103, 139, 210, 245, 489, 548, 585
SspMI	CTAG	3 cut(s)	149, 305, 521
StyD4I	CCNGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	404, 468, 534
TaqI	TCGA	3 cut(s)	15, 282, 618
TasI	AATT	7 cut(s)	103, 139, 210, 245, 489, 548, 585
TfiI	GAWTC	2 cut(s)	225, 460
Tru1I	TTAA	2 cut(s)	351, 546
Tru9I	TTAA	2 cut(s)	351, 546
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	179, 218
TspRI	CASTG	1 cut(s)	539
VneI	GTGCAC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	245, 585
XceI	RCATGY	1 cut(s)	22
XmnI	GAANNNNTTC	2 cut(s)	341, 585
XspI	CTAG	3 cut(s)	149, 305, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.