FvH4_3g09610

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000586
Physical Location & Seq
Forward (+)
5584409 .. 5588127
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09610.t1

Sequence Viewer

Length: 1431 bp
ATGGCTTCGGAACTGCGGTTGTTGGAGGAACTTGACATTTCTCTGTGCATGGGGATCTCACATGAGGCTATAAAAGCGGTCGGGCGCTCTTGCCCACTTTTGAAGTCATTCAAGTTCAATAAGGAGTGGTGCAGATTTTCTGATGATGAGTCTGACTCCGAAGAGTATGAGCCTGATCAGCATAATATGTACGACTTTGATCATCATGATGCGTATGACTTTGATGATGATTTTGCACCATTTCCTTTTGCTCATGCTCCTGTTTATCATGCTCCTGCTGCTCGTGTTCCTGTTAGAAAAGATGAGAATGCAGATGCAATTGCTATAGCAGGAACGATGCAAGGATTACATCACCTCCAGCTTTCTGGGAATCAGCTTACAGATGATGGCTTGAGAAAAATTCTAGATTGTTGTCCTCATCTTGAGTCACTTGATCTTCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTGGAAACAAGATGTGCTGAACTGATTAAAAGGTTTTGGCTTCCCCTTGATTCCATAGAGGGAAAAGGATTCACCTCTAGATCAGATGGATACTGCTTTAAATGGGTTGAACTTCCAGATAACGTTACTCTATCGATATTGTCACGGCTTGGAACTGTTGATATCCTGGACAATGCTCAGAAGGTATGCAAGAAGTGGCGCAAAGTCTGCAAGGAAACGAAGTGGACCACCATAGACATGCACAATGATTTTGCTCCAGAAATTACCTTCGACTATGATAAGATGTGCCCCCATGTTGTTGATCTTAGTTGTGGTAATTTGGTCGATGTGAATATGGAGGACTTAATCTCGGATGAGCTCCTAGGTTATATTACTGATAGTTACGTTGGGATCAAACGCCTGCGACTTTCGTGTTCTTATAACATATCAGATGAGGGTTTGATTGAAGTTGCATCAAAATTTCCACTGTTGGAGGAACTTGACATCTCAGTATGCGAAAATCTTTCACATAAACCTGTGAAAGTGCTTGGGCGCTCTTGCCCTCTTTTGAAATCATTCAAGTTGAATAAAAAATGGCACAAATATAGAGACAACTTTTTTGAAGAGATTATTGATGATGATGGTCCTTGGAGTAAAGATGACGATGCACTTGCTATAGCAGGAACGATGCATGGTTTACACCACCTGCAGCTTTTTGGGAATCAACTGACCAATGTTGGATTAAGGGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATCTTTGCTATTGTTTCAATCTTGATCTGGAGGGAGATTTGGGAAGAAGATGCAGTGAACAAATTAGGAAATTGTTGCTTCCCACAGATTCCATTGCTGGTTATGGATTGATGCCTTCTACAGATTGGCGACCTTCCAGGGAGACGAGTCCCCCATCACCTAAACTTCATGAATTCTGGGCCTGGGACTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

477

Amino Acids

54.29

Weight (kDa)

4.91

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 192 - 237 9.8e-08 F-box-like
F-box PF00646 192 - 229 7.1e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AarI CACCTGC 1 cut(s) 1164
Acc36I ACCTGC 1 cut(s) 1164
AciI CCGC 2 cut(s) 16, 77
AclI AACGTT 1 cut(s) 594
AclWI GGATC 2 cut(s) 62, 869
AcsI RAATTY 3 cut(s) 399, 929, 1406
AfaI GTAC 1 cut(s) 191
AjnI CCWGG 3 cut(s) 636, 1370, 1415
AluBI AGCT 4 cut(s) 361, 376, 829, 1162
AluI AGCT 4 cut(s) 361, 376, 829, 1162
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 2 cut(s) 1053, 1370
AlwI GGATC 2 cut(s) 62, 869
AoxI GGCC 1 cut(s) 1413
ApeKI GCWGC 2 cut(s) 278, 1159
ApoI RAATTY 3 cut(s) 399, 929, 1406
ArsI GACNNNNNNTTYG 2 cut(s) 1052, 1084
Asp700I GAANNNNTTC 2 cut(s) 107, 1025
AspA2I CCTAGG 1 cut(s) 832
AspLEI GCGC 3 cut(s) 87, 672, 1005
AspS9I GGNCC 3 cut(s) 696, 1094, 1413
AsuHPI GGTGA 3 cut(s) 344, 535, 1383
AvaII GGWCC 2 cut(s) 696, 1094
AvrII CCTAGG 1 cut(s) 832
BaeGI GKGCMC 1 cut(s) 761
BanII GRGCYC 1 cut(s) 831
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 265, 1171
BccI CCATC 5 cut(s) 380, 551, 1085, 1202, 1396
BceAI ACGGC 1 cut(s) 632
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 3 cut(s) 638, 1372, 1417
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 2 cut(s) 175, 199
BcoDI GTCTC 2 cut(s) 1053, 1370
BfaI CTAG 3 cut(s) 404, 549, 833
BfmI CTRYAG 4 cut(s) 324, 1125, 1157, 1353
BfoI RGCGCY 2 cut(s) 88, 1006
BfuAI ACCTGC 1 cut(s) 1164
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 2 cut(s) 279, 1160
BlnI CCTAGG 1 cut(s) 832
BlsI GCNGC 2 cut(s) 280, 1161
Bme1390I CCNGG 3 cut(s) 638, 1372, 1417
Bme18I GGWCC 2 cut(s) 696, 1094
BmgT120I GGNCC 3 cut(s) 696, 1094, 1413
BmrFI CCNGG 3 cut(s) 638, 1372, 1417
BmsI GCATC 8 cut(s) 199, 304, 327, 932, 1105, 1128, 1274, 1335
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 3 cut(s) 341, 711, 1283
BpuEI CTTGAG 3 cut(s) 412, 443, 1244
Bsa29I ATCGAT 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 832, 1097, 1371, 1416
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 3 cut(s) 638, 1372, 1417
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 4 cut(s) 832, 1097, 1371, 1416
BseGI GGATG 1 cut(s) 829
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 2 cut(s) 662, 972
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 2 cut(s) 265, 1171
BsgI GTGCAG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 1415
BshVI ATCGAT 1 cut(s) 605
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 831
BslFI GGGAC 1 cut(s) 1368
BsmAI GTCTC 2 cut(s) 1053, 1370
BsmBI CGTCTC 1 cut(s) 1370
BsmFI GGGAC 1 cut(s) 1368
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 1415
Bsp1286I GDGCHC 2 cut(s) 761, 831
Bsp143I GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
BspACI CCGC 2 cut(s) 16, 77
BspANI GGCC 1 cut(s) 1415
BspCNI CTCAG 2 cut(s) 661, 971
BspDI ATCGAT 1 cut(s) 605
BspHI TCATGA 2 cut(s) 205, 1402
BspMAI CTGCAG 1 cut(s) 1161
BspMI ACCTGC 1 cut(s) 1164
BspPI GGATC 2 cut(s) 62, 869
BsrDI GCAATG 1 cut(s) 1326
BssECI CCNNGG 4 cut(s) 832, 1097, 1371, 1416
BssMI GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 832, 1097
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 3 cut(s) 638, 1372, 1417
Bst4CI ACNGT 2 cut(s) 628, 939
Bst6I CTCTTC 2 cut(s) 156, 1068
BstAPI GCANNNNNTGC 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 872
BstDEI CTNAG 3 cut(s) 648, 776, 958
BstF5I GGATG 1 cut(s) 829
BstH2I RGCGCY 2 cut(s) 88, 1006
BstHHI GCGC 3 cut(s) 87, 672, 1005
BstKTI GATC 9 cut(s) 57, 178, 202, 436, 554, 775, 864, 1237, 1261
BstMAI GTCTC 2 cut(s) 1053, 1370
BstMBI GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 4 cut(s) 74, 178, 278, 678
BstNI CCWGG 3 cut(s) 638, 1372, 1417
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 3 cut(s) 636, 1370, 1415
BstSFI CTRYAG 4 cut(s) 324, 1125, 1157, 1353
BstSLI GKGCMC 1 cut(s) 761
BstV1I GCAGC 2 cut(s) 265, 1171
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 365
BstYI RGATCY 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 605
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 1 cut(s) 1415
BsuTUI ATCGAT 1 cut(s) 605
BtsCI GGATG 1 cut(s) 829
BtsI GCAGTG 1 cut(s) 1294
BtsIMutI CAGTG 2 cut(s) 935, 1294
BveI ACCTGC 1 cut(s) 1164
Cac8I GCNNGC 1 cut(s) 872
CciI TCATGA 2 cut(s) 205, 1402
CfoI GCGC 3 cut(s) 87, 672, 1005
Cfr13I GGNCC 3 cut(s) 696, 1094, 1413
ClaI ATCGAT 1 cut(s) 605
Csp6I GTAC 1 cut(s) 190
CviAII CATG 9 cut(s) 49, 62, 206, 254, 269, 709, 764, 1142, 1403
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 648, 776, 958
DpnI GATC 9 cut(s) 56, 177, 201, 435, 553, 774, 863, 1236, 1260
DpnII GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
DraI TTTAAA 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 156, 1068
EarI CTCTTC 2 cut(s) 156, 1068
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 2 cut(s) 832, 1097
Eco24I GRGCYC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 696, 1094
Eco53kI GAGCTC 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 829
EcoRI GAATTC 1 cut(s) 1406
EcoRII CCWGG 3 cut(s) 636, 1370, 1415
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 832, 1097
EcoT22I ATGCAT 1 cut(s) 1143
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 2 cut(s) 832, 1097
Esp3I CGTCTC 1 cut(s) 1370
FaeI CATG 9 cut(s) 52, 65, 209, 257, 272, 712, 767, 1145, 1406
FaqI GGGAC 1 cut(s) 1368
FatI CATG 9 cut(s) 48, 61, 205, 253, 268, 708, 763, 1141, 1402
FbaI TGATCA 2 cut(s) 175, 199
Fnu4HI GCNGC 2 cut(s) 279, 1160
FokI GGATG 1 cut(s) 836
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 2 cut(s) 279, 1160
FspBI CTAG 3 cut(s) 404, 549, 833
GlaI GCGC 3 cut(s) 86, 671, 1004
GluI GCNGC 2 cut(s) 279, 1160
GsuI CTGGAG 3 cut(s) 341, 711, 1283
HaeII RGCGCY 2 cut(s) 88, 1006
HaeIII GGCC 1 cut(s) 1415
HhaI GCGC 3 cut(s) 87, 672, 1005
Hin1II CATG 9 cut(s) 52, 65, 209, 257, 272, 712, 767, 1145, 1406
Hin6I GCGC 3 cut(s) 85, 670, 1003
HinP1I GCGC 3 cut(s) 85, 670, 1003
HphI GGTGA 3 cut(s) 344, 535, 1383
Hpy166II GTNNAC 3 cut(s) 696, 1148, 1292
Hpy188I TCNGA 8 cut(s) 10, 142, 154, 160, 556, 651, 823, 901
Hpy8I GTNNAC 3 cut(s) 696, 1148, 1292
HpyAV CCTTC 4 cut(s) 646, 748, 1359, 1377
HpyCH4III ACNGT 2 cut(s) 628, 939
HpyCH4IV ACGT 2 cut(s) 594, 855
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 178, 278, 678
HpyF3I CTNAG 3 cut(s) 648, 776, 958
HpySE526I ACGT 2 cut(s) 594, 855
Hsp92II CATG 9 cut(s) 52, 65, 209, 257, 272, 712, 767, 1145, 1406
HspAI GCGC 3 cut(s) 85, 670, 1003
Ksp22I TGATCA 2 cut(s) 175, 199
Kzo9I GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
LmnI GCTCC 4 cut(s) 262, 277, 730, 834
Lsp1109I GCAGC 2 cut(s) 265, 1171
LweI GCATC 8 cut(s) 199, 304, 327, 932, 1105, 1128, 1274, 1335
MaeI CTAG 3 cut(s) 404, 549, 833
MaeII ACGT 2 cut(s) 594, 855
MaeIII GTNAC 5 cut(s) 426, 595, 612, 851, 1227
MalI GATC 9 cut(s) 56, 177, 201, 435, 553, 774, 863, 1236, 1260
MboI GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
MboII GAAGA 5 cut(s) 173, 428, 1085, 1290, 1293
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 761, 831
MluCI AATT 9 cut(s) 318, 399, 732, 787, 929, 1200, 1296, 1304, 1406
MlyI GAGTC 5 cut(s) 149, 158, 434, 1235, 1390
MmeI TCCRAC 2 cut(s) 921, 1168
Mph1103I ATGCAT 1 cut(s) 1143
MroXI GAANNNNTTC 2 cut(s) 107, 1025
MseI TTAA 4 cut(s) 498, 570, 815, 1193
MslI CAYNNNNRTG 2 cut(s) 207, 707
MspR9I CCNGG 3 cut(s) 638, 1372, 1417
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 3 cut(s) 638, 1372, 1417
MwoI GCNNNNNNNGC 4 cut(s) 74, 178, 278, 678
NdeII GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
NlaIII CATG 9 cut(s) 52, 65, 209, 257, 272, 712, 767, 1145, 1406
NmuCI GTSAC 3 cut(s) 426, 612, 1227
NsiI ATGCAT 1 cut(s) 1143
NspI RCATGY 1 cut(s) 712
PagI TCATGA 2 cut(s) 205, 1402
PaqCI CACCTGC 1 cut(s) 1164
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 2 cut(s) 107, 1025
PfeI GAWTC 5 cut(s) 370, 521, 540, 1171, 1322
PfoI TCCNGGA 1 cut(s) 636
PkrI GCNGC 2 cut(s) 280, 1161
PleI GAGTC 5 cut(s) 149, 157, 433, 1234, 1389
PpsI GAGTC 5 cut(s) 149, 157, 433, 1234, 1389
PsiI TTATAA 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 831
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 636, 1370, 1415
PspGI CCWGG 3 cut(s) 636, 1370, 1415
PspPI GGNCC 3 cut(s) 696, 1094, 1413
PstI CTGCAG 1 cut(s) 1161
PsuI RGATCY 1 cut(s) 54
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 207, 707
SacI GAGCTC 1 cut(s) 831
SaqAI TTAA 4 cut(s) 498, 570, 815, 1193
SatI GCNGC 2 cut(s) 279, 1160
Sau3AI GATC 9 cut(s) 54, 175, 199, 433, 551, 772, 861, 1234, 1258
Sau96I GGNCC 3 cut(s) 696, 1094, 1413
SchI GAGTC 5 cut(s) 149, 158, 434, 1235, 1390
ScrFI CCNGG 3 cut(s) 638, 1372, 1417
SduI GDGCHC 2 cut(s) 761, 831
SfaNI GCATC 8 cut(s) 199, 304, 327, 932, 1105, 1128, 1274, 1335
SfcI CTRYAG 4 cut(s) 324, 1125, 1157, 1353
SinI GGWCC 2 cut(s) 696, 1094
SmiMI CAYNNNNRTG 2 cut(s) 207, 707
SmlI CTYRAG 3 cut(s) 391, 422, 1223
SmoI CTYRAG 3 cut(s) 391, 422, 1223
Sse9I AATT 9 cut(s) 318, 399, 732, 787, 929, 1200, 1296, 1304, 1406
SsiI CCGC 2 cut(s) 16, 77
SspMI CTAG 3 cut(s) 404, 549, 833
SstI GAGCTC 1 cut(s) 831
StyD4I CCNGG 3 cut(s) 636, 1370, 1415
StyI CCWWGG 2 cut(s) 832, 1097
TaaI ACNGT 2 cut(s) 628, 939
TaiI ACGT 2 cut(s) 597, 858
TaqI TCGA 3 cut(s) 605, 741, 795
TasI AATT 9 cut(s) 318, 399, 732, 787, 929, 1200, 1296, 1304, 1406
TfiI GAWTC 5 cut(s) 370, 521, 540, 1171, 1322
Tru1I TTAA 4 cut(s) 498, 570, 815, 1193
Tru9I TTAA 4 cut(s) 498, 570, 815, 1193
TscAI CASTG 2 cut(s) 942, 1294
TseFI GTSAC 3 cut(s) 426, 612, 1227
TseI GCWGC 2 cut(s) 278, 1159
Tsp45I GTSAC 3 cut(s) 426, 612, 1227
TspDTI ATGAA 2 cut(s) 1391, 1419
TspRI CASTG 2 cut(s) 942, 1294
VpaK11BI GGWCC 2 cut(s) 696, 1094
XapI RAATTY 3 cut(s) 399, 929, 1406
XbaI TCTAGA 2 cut(s) 403, 548
XceI RCATGY 1 cut(s) 712
XmaJI CCTAGG 1 cut(s) 832
XmnI GAANNNNTTC 2 cut(s) 107, 1025
XspI CTAG 3 cut(s) 404, 549, 833
Zsp2I ATGCAT 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.