FvH4_3g09620

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000586
Physical Location & Seq
Forward (+)
5589645 .. 5593271
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09620.t1

Sequence Viewer

Length: 1425 bp
ATGATGAGCGAATCCTCTGATCGACGCAAGAGAATCCGCCGCAACTGGACGGAGCTCCCTGAGAAAGCTACGTCGTCGATACTCTCACGGCTCGGAGCTATCGAAATCCTAGAGAGCTCTCAGAAGGTGTGCATGAAATGGCGCAAAGTCTCCAAGGACCCTTTGATGTGGCGCAAGATTGACATGCACAATGATGGTGACCTCGAAGATATGGACTACGACTTGGAGGAGATGTGCCGCCATGCCGTTGATCGGAGCGCTGGTAATCTGGTCGATATTAACATCGAGTACTTCGGCACCGATGAGTTGCTTGAGTACATCACTGAGAGGAACTTGAGATTTCTGTGTGATAATATCTCCCATGAAGCTTTAGATGTGATTGGGCGCTCTTGCCCCTTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTCTCACAAGATGGCAGCGGGCCTTATGAGTTTCATTTTAGTGATTTTTATTCACGTATTCTCGATGCTTACCAGAAAAGGAATCAAGCTCCTTTTCATTGGAATGTGGATTACGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACAACACCTACAGCTATTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTCTTGTCCTGATCTTGGCTCACTTGATCTGCGCCATTGTTTCATTCTCAATCTGGAGGGAGATTGGAGAAGTATATGTGCTGAACGAATTAAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTTGCTATATCTGAAGCTTATTGTTTTAAATGGACGGAACTCCCAGATACAATTACAGCATCAATACTGTCAAGGGTTGGGGGGATTGAGATCCTGGCGAACGCTCAGAAGGTGTGCTCGAAGTGGTTCAAAATCTGCAAGGACCCTTCGATGTGGCGCACCAGTGACATGCGCAATAGTATTCATTTTGATGACTACAGGCCCTTCTTCTTCCATGAGTTGTGTGAACATGCCATTAAGCGTAGCCGTGGTAATCTGGTTGACATCAACATCGAGAACTTTGGCACTGATGTGCTCCTTGAATACTACATTGCTGAGAGATTCAACAAACTTTGGTTCATAGAAGATATAAATGGTCGTTACAAGCTTGAGCACAATGACTGTGCACTTGCTATAGCAGGAACAATGCCCGGGTTACACCACCTCATGCTCTTCAGGAATCAGCTGACCAATAAAGGCTTGTGCGCCATTCTTGATGGTTGTCCTCATCTCGAGTCACTTGATCTGCGCCAGTGTTTCAATCTCAAGTTAGGGGGAAAGCTGGGAAGACGTTGTGTTGATCAAGTTAAAAAGTTGCGGCATCCACATGATTCTGTCAATGACATTGACCCATCATATGATTTTGTTTTTGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

475

Amino Acids

55.16

Weight (kDa)

5.79

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 16 - 62 4.8e-06 F-box-like
F-box-like PF12937 273 - 318 6.8e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 959
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 5 cut(s) 37, 40, 238, 453, 1363
AclWI GGATC 1 cut(s) 871
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 2 cut(s) 819, 1204
AfaI GTAC 2 cut(s) 290, 317
AfeI AGCGCT 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 252, 665
AgsI TTSAA 7 cut(s) 403, 412, 418, 916, 1088, 1111, 1306
AjnI CCWGG 1 cut(s) 879
AleI CACNNNNGTG 1 cut(s) 1076
Alw21I GWGCWC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
Alw26I GTCTC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 1 cut(s) 871
Ama87I CYCGRG 2 cut(s) 1196, 1277
Aor51HI AGCGCT 1 cut(s) 259
AoxI GGCC 2 cut(s) 455, 986
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 782
Asp700I GAANNNNTTC 2 cut(s) 407, 911
AspLEI GCGC 9 cut(s) 144, 174, 260, 387, 684, 945, 960, 1253, 1296
AspS9I GGNCC 4 cut(s) 157, 455, 928, 987
AsuC2I CCSGG 2 cut(s) 1197, 1198
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 2 cut(s) 1196, 1277
AvaII GGWCC 2 cut(s) 157, 928
BaeGI GKGCMC 1 cut(s) 1174
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 57, 119
BbsI GAAGAC 1 cut(s) 1339
Bbv12I GWGCWC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
BbvI GCAGC 1 cut(s) 462
BccI CCATC 5 cut(s) 188, 440, 623, 1256, 1405
BceAI ACGGC 3 cut(s) 104, 230, 1017
BciT130I CCWGG 1 cut(s) 881
BclI TGATCA 1 cut(s) 1345
BcnI CCSGG 2 cut(s) 1197, 1198
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 4 cut(s) 567, 599, 982, 1179
BfoI RGCGCY 2 cut(s) 261, 388
BisI GCNGC 4 cut(s) 40, 238, 451, 1364
BlsI GCNGC 4 cut(s) 41, 239, 452, 1365
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 3 cut(s) 881, 1197, 1198
Bme18I GGWCC 2 cut(s) 157, 928
BmeT110I CYCGRG 2 cut(s) 1196, 1277
BmgT120I GGNCC 4 cut(s) 157, 455, 928, 987
BmiI GGNNCC 4 cut(s) 159, 298, 577, 930
BmrFI CCNGG 3 cut(s) 881, 1197, 1198
BmsI GCATC 4 cut(s) 490, 541, 854, 1375
BpiI GAAGAC 1 cut(s) 1339
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 5 cut(s) 332, 355, 655, 1175, 1295
BpuMI CCSGG 2 cut(s) 1197, 1198
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 875
BsaJI CCNNGG 3 cut(s) 153, 1033, 1196
BsaXI ACNNNNNCTCC 4 cut(s) 218, 247, 248, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 665
Bse1I ACTGG 3 cut(s) 50, 948, 1297
Bse3DI GCAATG 1 cut(s) 1095
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 1 cut(s) 881
BseDI CCNNGG 3 cut(s) 153, 1033, 1196
BseGI GGATG 1 cut(s) 1366
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 2 cut(s) 252, 665
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 6 cut(s) 51, 134, 315, 762, 905, 1092
BseNI ACTGG 3 cut(s) 50, 948, 1297
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 1 cut(s) 462
BseYI CCCAGC 1 cut(s) 1327
BshFI GGCC 2 cut(s) 457, 988
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
BsiHKCI CYCGRG 2 cut(s) 1196, 1277
BsiSI CCGG 1 cut(s) 1197
BslI CCNNNNNNNGG 2 cut(s) 252, 665
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 457, 988
BsoBI CYCGRG 2 cut(s) 1196, 1277
Bsp1286I GDGCHC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
Bsp143I GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
BspACI CCGC 5 cut(s) 37, 40, 238, 453, 1363
BspANI GGCC 2 cut(s) 457, 988
BspCNI CTCAG 6 cut(s) 52, 133, 316, 763, 904, 1093
BspLI GGNNCC 4 cut(s) 159, 298, 577, 930
BspPI GGATC 1 cut(s) 871
BspQI GCTCTTC 1 cut(s) 1223
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 1095
BsrI ACTGG 3 cut(s) 50, 948, 1297
BssECI CCNNGG 3 cut(s) 153, 1033, 1196
BssMI GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 2 cut(s) 855, 1169
Bst6I CTCTTC 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 6 cut(s) 60, 120, 324, 771, 891, 1101
BstDSI CCRYGG 1 cut(s) 1033
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 1366
BstH2I RGCGCY 2 cut(s) 261, 388
BstHHI GCGC 9 cut(s) 144, 174, 260, 387, 684, 945, 960, 1253, 1296
BstKTI GATC 7 cut(s) 22, 253, 664, 679, 879, 1291, 1348
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
BstNI CCWGG 1 cut(s) 881
BstNSI RCATGY 3 cut(s) 187, 958, 1019
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 3 cut(s) 879, 1195, 1196
BstSFI CTRYAG 4 cut(s) 567, 599, 982, 1179
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 1339
BstX2I RGATCY 1 cut(s) 876
BstYI RGATCY 1 cut(s) 876
BsuRI GGCC 2 cut(s) 457, 988
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 1 cut(s) 1366
BtsIMutI CAGTG 5 cut(s) 321, 768, 955, 1071, 1304
Cac8I GCNNGC 1 cut(s) 455
CfoI GCGC 9 cut(s) 144, 174, 260, 387, 684, 945, 960, 1253, 1296
Cfr13I GGNCC 4 cut(s) 157, 455, 928, 987
Cfr9I CCCGGG 1 cut(s) 1196
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 289, 316
CviQI GTAC 2 cut(s) 289, 316
DdeI CTNAG 6 cut(s) 60, 120, 324, 771, 891, 1101
DpnI GATC 7 cut(s) 21, 252, 663, 678, 878, 1290, 1347
DpnII GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
DraI TTTAAA 1 cut(s) 814
Eam1104I CTCTTC 1 cut(s) 1223
EarI CTCTTC 1 cut(s) 1223
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 2 cut(s) 55, 117
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 57, 119
Eco47I GGWCC 2 cut(s) 157, 928
Eco47III AGCGCT 1 cut(s) 259
Eco53kI GAGCTC 2 cut(s) 55, 117
Eco57I CTGAAG 2 cut(s) 819, 1204
Eco88I CYCGRG 2 cut(s) 1196, 1277
Eco91I GGTNACC 1 cut(s) 197
EcoICRI GAGCTC 2 cut(s) 55, 117
EcoO109I RGGNCCY 3 cut(s) 157, 928, 987
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 879
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 57, 119
ErhI CCWWGG 1 cut(s) 153
FauI CCCGC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 1402
FbaI TGATCA 1 cut(s) 1345
Fnu4HI GCNGC 4 cut(s) 40, 238, 451, 1364
FokI GGATG 1 cut(s) 1353
FriOI GRGCYC 2 cut(s) 57, 119
Fsp4HI GCNGC 4 cut(s) 40, 238, 451, 1364
FspBI CTAG 1 cut(s) 110
FspI TGCGCA 1 cut(s) 959
GlaI GCGC 9 cut(s) 143, 173, 259, 386, 683, 944, 959, 1252, 1295
GluI GCNGC 4 cut(s) 40, 238, 451, 1364
GsaI CCCAGC 1 cut(s) 1331
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 2 cut(s) 261, 388
HaeIII GGCC 2 cut(s) 457, 988
HapII CCGG 1 cut(s) 1197
HgaI GACGC 1 cut(s) 33
HhaI GCGC 9 cut(s) 144, 174, 260, 387, 684, 945, 960, 1253, 1296
Hin6I GCGC 9 cut(s) 142, 172, 258, 385, 682, 943, 958, 1251, 1294
HinP1I GCGC 9 cut(s) 142, 172, 258, 385, 682, 943, 958, 1251, 1294
HincII GTYRAC 2 cut(s) 621, 1048
HindII GTYRAC 2 cut(s) 621, 1048
HindIII AAGCTT 3 cut(s) 366, 801, 1151
HinfI GANTC 9 cut(s) 11, 33, 517, 650, 764, 1107, 1225, 1280, 1376
HpaII CCGG 1 cut(s) 1197
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 5 cut(s) 590, 621, 1013, 1048, 1172
Hpy188I TCNGA 6 cut(s) 19, 95, 123, 255, 799, 894
Hpy188III TCNNGA 8 cut(s) 497, 647, 659, 704, 1060, 1222, 1259, 1277
Hpy8I GTNNAC 5 cut(s) 590, 621, 1013, 1048, 1172
Hpy99I CGWCG 3 cut(s) 27, 76, 79
HpyAV CCTTC 4 cut(s) 118, 889, 942, 1000
HpyCH4III ACNGT 2 cut(s) 855, 1169
HpyCH4IV ACGT 3 cut(s) 71, 490, 1336
HpyCH4V TGCA 6 cut(s) 132, 187, 554, 583, 924, 1172
HpyF3I CTNAG 6 cut(s) 60, 120, 324, 771, 891, 1101
HpySE526I ACGT 3 cut(s) 71, 490, 1336
HspAI GCGC 9 cut(s) 142, 172, 258, 385, 682, 943, 958, 1251, 1294
Ksp22I TGATCA 1 cut(s) 1345
Kzo9I GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
LguI GCTCTTC 1 cut(s) 1223
LmnI GCTCC 6 cut(s) 52, 60, 95, 255, 529, 1086
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 4 cut(s) 490, 541, 854, 1375
MaeI CTAG 1 cut(s) 110
MaeII ACGT 3 cut(s) 71, 490, 1336
MaeIII GTNAC 5 cut(s) 197, 950, 1145, 1200, 1281
MalI GATC 7 cut(s) 21, 252, 663, 678, 878, 1290, 1347
MboI GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
MboII GAAGA 6 cut(s) 218, 985, 988, 1142, 1210, 1344
MflI RGATCY 1 cut(s) 876
MhlI GDGCHC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
MluCI AATT 4 cut(s) 738, 746, 782, 837
MlyI GAGTC 1 cut(s) 1289
MnlI CCTC 9 cut(s) 25, 212, 220, 321, 550, 700, 766, 1220, 1281
Mph1103I ATGCAT 1 cut(s) 585
MroXI GAANNNNTTC 2 cut(s) 407, 911
MseI TTAA 5 cut(s) 279, 741, 813, 1023, 1353
MslI CAYNNNNRTG 6 cut(s) 192, 474, 537, 975, 1076, 1371
MspA1I CMGCKG 2 cut(s) 453, 1231
MspI CCGG 1 cut(s) 1197
MspR9I CCNGG 3 cut(s) 881, 1197, 1198
MvaI CCWGG 1 cut(s) 881
NciI CCSGG 2 cut(s) 1197, 1198
NdeI CATATG 1 cut(s) 1402
NdeII GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
NlaIV GGNNCC 4 cut(s) 159, 298, 577, 930
NmuCI GTSAC 3 cut(s) 197, 950, 1281
NsbI TGCGCA 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 3 cut(s) 187, 958, 1019
OliI CACNNNNGTG 1 cut(s) 1076
PaeR7I CTCGAG 1 cut(s) 1277
PciSI GCTCTTC 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 407, 911
PfeI GAWTC 8 cut(s) 11, 33, 517, 650, 764, 1107, 1225, 1376
PkrI GCNGC 4 cut(s) 41, 239, 452, 1365
PleI GAGTC 1 cut(s) 1288
PpsI GAGTC 1 cut(s) 1288
Ppu21I YACGTR 1 cut(s) 491
PpuMI RGGWCCY 2 cut(s) 157, 928
Psp124BI GAGCTC 2 cut(s) 57, 119
Psp5II RGGWCCY 2 cut(s) 157, 928
Psp6I CCWGG 1 cut(s) 879
PspEI GGTNACC 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 1327
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 4 cut(s) 159, 298, 577, 930
PspPI GGNCC 4 cut(s) 157, 455, 928, 987
PspPPI RGGWCCY 2 cut(s) 157, 928
PsuI RGATCY 1 cut(s) 876
PvuII CAGCTG 1 cut(s) 1231
RsaI GTAC 2 cut(s) 290, 317
RsaNI GTAC 2 cut(s) 289, 316
RseI CAYNNNNRTG 6 cut(s) 192, 474, 537, 975, 1076, 1371
SacI GAGCTC 2 cut(s) 57, 119
SapI GCTCTTC 1 cut(s) 1223
SaqAI TTAA 5 cut(s) 279, 741, 813, 1023, 1353
SatI GCNGC 4 cut(s) 40, 238, 451, 1364
Sau3AI GATC 7 cut(s) 19, 250, 661, 676, 876, 1288, 1345
Sau96I GGNCC 4 cut(s) 157, 455, 928, 987
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 1 cut(s) 1289
ScrFI CCNGG 3 cut(s) 881, 1197, 1198
SduI GDGCHC 6 cut(s) 57, 119, 905, 1083, 1161, 1174
SfaNI GCATC 4 cut(s) 490, 541, 854, 1375
SfcI CTRYAG 4 cut(s) 567, 599, 982, 1179
Sfr274I CTCGAG 1 cut(s) 1277
SinI GGWCC 2 cut(s) 157, 928
SlaI CTCGAG 1 cut(s) 1277
SmaI CCCGGG 1 cut(s) 1198
SmiMI CAYNNNNRTG 6 cut(s) 192, 474, 537, 975, 1076, 1371
SmlI CTYRAG 6 cut(s) 311, 334, 634, 1154, 1277, 1310
SmoI CTYRAG 6 cut(s) 311, 334, 634, 1154, 1277, 1310
Sse9I AATT 4 cut(s) 738, 746, 782, 837
SsiI CCGC 5 cut(s) 37, 40, 238, 453, 1363
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 2 cut(s) 57, 119
StyD4I CCNGG 3 cut(s) 879, 1195, 1196
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 855, 1169
TaiI ACGT 3 cut(s) 74, 493, 1339
TasI AATT 4 cut(s) 738, 746, 782, 837
TatI WGTACW 2 cut(s) 288, 315
TauI GCSGC 3 cut(s) 42, 240, 1366
TfiI GAWTC 8 cut(s) 11, 33, 517, 650, 764, 1107, 1225, 1376
Tru1I TTAA 5 cut(s) 279, 741, 813, 1023, 1353
Tru9I TTAA 5 cut(s) 279, 741, 813, 1023, 1353
TscAI CASTG 5 cut(s) 328, 775, 955, 1078, 1304
TseFI GTSAC 3 cut(s) 197, 950, 1281
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 3 cut(s) 197, 950, 1281
TspDTI ATGAA 7 cut(s) 149, 378, 458, 521, 682, 959, 1114
TspGWI ACGGA 2 cut(s) 65, 836
TspMI CCCGGG 1 cut(s) 1196
TspRI CASTG 5 cut(s) 328, 775, 955, 1078, 1304
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 2 cut(s) 157, 928
XapI RAATTY 1 cut(s) 782
XceI RCATGY 3 cut(s) 187, 958, 1019
XhoI CTCGAG 1 cut(s) 1277
XmaI CCCGGG 1 cut(s) 1196
XmnI GAANNNNTTC 2 cut(s) 407, 911
XspI CTAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.