Rh5DG117700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000586
Physical Location & Seq
Forward (+)
10606727 .. 10616535
9809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117700.1

Sequence Viewer

Length: 843 bp
ATGTGGAGCAAGATTGACATGCGAAACGATGGTGAGATTAACTATGACTTGGAGGAGATGTGCCGCCACGCCGTTGATCTGAGTCCCGGTAATCTTGTTGATATTAACATCGAGTATTTCGGCACCGATGAGCTGCTTGAATACATCACTGAAAGTTCGCGTGGAATCAGACCCCTCCTCCTATTATATTGTGATGACATATCTGATGGGGGATTGAGTAAAGTGTCTTCAAAACTTCTGTTGTTGGAGGAACTTGACATTTCTCTAGATTACGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGTTTTCTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTGGCTCACTTGATCTGCGCCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGCTTATTGCTTTAAATGGACAGAACTCCCAGACGATGTTACAGCATTGATACTGTCACAGCTGGGAGGGATTGACATCCTCACCTCCGCACAGAAGATGGTCGATATCAATGTTGAGAGCTTTGGAACCAATGAGCTCCTTAAATATCATATCGCTGAGAGTTCTACTGGACTCAAACGCCTCAGGTTAGTGACTTCTTCTAGAATAACAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCTCTGTTGGAGGACCTTGACCTTTCAATACATGAGGATATCTCACATGAAACTCTAGCATTGGTTGGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

280

Amino Acids

31.54

Weight (kDa)

4.53

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 64, 612
AcsI RAATTY 2 cut(s) 506, 764
AcuI CTGAAG 1 cut(s) 543
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 140, 231, 762, 795
AluBI AGCT 5 cut(s) 133, 527, 586, 645, 661
AluI AGCT 5 cut(s) 133, 527, 586, 645, 661
Alw21I GWGCWC 1 cut(s) 663
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 506, 764
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 781
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 44, 598
AvaII GGWCC 1 cut(s) 781
AxyI CCTNAGG 1 cut(s) 707
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 663
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 663
BbvI GCAGC 1 cut(s) 120
BccI CCATC 4 cut(s) 23, 200, 347, 616
BceAI ACGGC 1 cut(s) 56
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 4 cut(s) 266, 516, 726, 824
BfmI CTRYAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 518
BisI GCNGC 2 cut(s) 64, 134
BlsI GCNGC 2 cut(s) 65, 135
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 3 cut(s) 124, 301, 652
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 599
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 162, 192, 306, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 325, 697
Bse21I CCTNAGG 1 cut(s) 707
Bse8I GATNNNNATC 1 cut(s) 599
BseGI GGATG 1 cut(s) 600
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 4 cut(s) 71, 486, 672, 721
BseNI ACTGG 2 cut(s) 325, 697
BseRI GAGGAG 2 cut(s) 68, 167
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 586
Bsh1236I CGCG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 4 cut(s) 76, 385, 400, 518
BspACI CCGC 2 cut(s) 64, 612
BspCNI CTCAG 4 cut(s) 72, 487, 673, 720
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 124, 301, 652
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 325, 697
BssMI GATC 4 cut(s) 76, 385, 400, 518
Bst4CI ACNGT 1 cut(s) 579
BstDEI CTNAG 4 cut(s) 80, 495, 681, 707
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 4 cut(s) 79, 388, 403, 521
BstMBI GATC 4 cut(s) 76, 385, 400, 518
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 707
BtsCI GGATG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 147, 492
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 781
CviAII CATG 6 cut(s) 19, 304, 308, 485, 800, 815
CviJI RGCY 9 cut(s) 133, 357, 393, 478, 527, 586, 645, 661, 758
CviKI_1 RGCY 9 cut(s) 133, 357, 393, 478, 527, 586, 645, 661, 758
DdeI CTNAG 4 cut(s) 80, 495, 681, 707
DpnI GATC 4 cut(s) 78, 387, 402, 520
DpnII GATC 4 cut(s) 76, 385, 400, 518
DraI TTTAAA 1 cut(s) 538
Ecl136II GAGCTC 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 663
Eco32I GATATC 2 cut(s) 631, 808
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 543
Eco81I CCTNAGG 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 781
EcoRV GATATC 2 cut(s) 631, 808
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 663
FaeI CATG 6 cut(s) 22, 307, 311, 488, 803, 818
FaqI GGGAC 1 cut(s) 69
FatI CATG 6 cut(s) 18, 303, 307, 484, 799, 814
Fnu4HI GCNGC 2 cut(s) 64, 134
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 2 cut(s) 64, 134
FspBI CTAG 4 cut(s) 266, 516, 726, 824
GlaI GCGC 1 cut(s) 407
GluI GCNGC 2 cut(s) 64, 134
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 308
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 408
Hin1II CATG 6 cut(s) 22, 307, 311, 488, 803, 818
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 4 cut(s) 82, 165, 488, 696
HpaII CCGG 1 cut(s) 87
HphI GGTGA 2 cut(s) 44, 598
Hpy166II GTNNAC 2 cut(s) 314, 345
Hpy188I TCNGA 4 cut(s) 81, 170, 205, 523
Hpy188III TCNNGA 5 cut(s) 266, 371, 383, 726, 749
Hpy8I GTNNAC 2 cut(s) 314, 345
HpyAV CCTTC 1 cut(s) 734
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 278, 307
HpyF3I CTNAG 4 cut(s) 80, 495, 681, 707
Hsp92II CATG 6 cut(s) 22, 307, 311, 488, 803, 818
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 4 cut(s) 76, 385, 400, 518
LmnI GCTCC 2 cut(s) 6, 666
LpnPI CCDG 9 cut(s) 100, 282, 318, 338, 396, 567, 572, 678, 694
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 265
MaeI CTAG 4 cut(s) 266, 516, 726, 824
MaeIII GTNAC 3 cut(s) 562, 579, 715
MalI GATC 4 cut(s) 78, 387, 402, 520
MboI GATC 4 cut(s) 76, 385, 400, 518
MboII GAAGA 4 cut(s) 219, 456, 631, 714
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 663
MluCI AATT 4 cut(s) 462, 470, 506, 764
MlyI GAGTC 2 cut(s) 91, 690
MmeI TCCRAC 3 cut(s) 225, 756, 814
Mph1103I ATGCAT 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 5 cut(s) 39, 105, 423, 537, 666
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 160
NciI CCSGG 1 cut(s) 87
NdeII GATC 4 cut(s) 76, 385, 400, 518
NlaIII CATG 6 cut(s) 22, 307, 311, 488, 803, 818
NlaIV GGNNCC 3 cut(s) 124, 301, 652
NmuCI GTSAC 2 cut(s) 579, 715
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 2 cut(s) 165, 488
PkrI GCNGC 2 cut(s) 65, 135
PleI GAGTC 2 cut(s) 90, 690
PpsI GAGTC 2 cut(s) 90, 690
PpuMI RGGWCCY 1 cut(s) 781
Psp124BI GAGCTC 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 781
PspFI CCCAGC 1 cut(s) 586
PspN4I GGNNCC 3 cut(s) 124, 301, 652
PspPI GGNCC 1 cut(s) 781
PspPPI RGGWCCY 1 cut(s) 781
PsuI RGATCY 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 586
SacI GAGCTC 1 cut(s) 663
SaqAI TTAA 5 cut(s) 39, 105, 423, 537, 666
SatI GCNGC 2 cut(s) 64, 134
Sau3AI GATC 4 cut(s) 76, 385, 400, 518
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 2 cut(s) 91, 690
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 781
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 4 cut(s) 462, 470, 506, 764
SsiI CCGC 2 cut(s) 64, 612
SspMI CTAG 4 cut(s) 266, 516, 726, 824
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 579
TaqI TCGA 2 cut(s) 111, 627
TasI AATT 4 cut(s) 462, 470, 506, 764
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 165, 488
Tru1I TTAA 5 cut(s) 39, 105, 423, 537, 666
Tru9I TTAA 5 cut(s) 39, 105, 423, 537, 666
TscAI CASTG 2 cut(s) 154, 499
TseFI GTSAC 2 cut(s) 579, 715
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 579, 715
TspDTI ATGAA 4 cut(s) 406, 471, 753, 831
TspRI CASTG 2 cut(s) 154, 499
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 2 cut(s) 506, 764
XbaI TCTAGA 2 cut(s) 265, 725
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 4 cut(s) 266, 516, 726, 824
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.