Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Reverse (-)

83401032 .. 83402263

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCACAAAGTCTGCAAGGACCCTCTCATCTGGCGCAAGATTACATGCGCAACGATGGCGATCTCGAAGACATGGACTACGACTTGGAGGAGATGTGGCGCCACGCCGTTAATGGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGTACTTCGGCACCGATGAGCTGCTTGATCATATCACTGATAGCTCGAGTGGAATCAGACGTCTCCGACTGTTGTGTTGTGATGCCATATCAGATGCGGGATTGAGTAAAGTGGCTTTAAAACTGCCATTGTTGGAGGAACTTGACATTTCTCTATGCGATAATATCTCGCATGAAGGTGTAGAAGTGCTTGGCCGCTCTTGCCTCTTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTTTCACAAGACGGCCGCGGGCCTTACGAGTTTCATTTCAGTGATTATTATTCACGTATTCTTGATGCTTACCGAAAAAGAAATCAAGTACCCTTTCATTGGAATGTGGATTATGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGATTTTTGGGAATAAGTTGACAGATGATGGATTGACAAGCATTCTTGATTGTTGTCCTGATCTTGTCTCACTTGACCTGCGCCATTGTTTCATTCTCAATATGGAGGGAGATTGGAGAAGTACATGTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

231

Amino Acids

26.31

Weight (kDa)

4.68

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	211
Acc16I	TGCGCA	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	645
AccB1I	GGYRCC	2 cut(s)	99, 158
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	411
AciI	CCGC	4 cut(s)	245, 343, 409, 411
AcoI	YGGCCR	2 cut(s)	340, 406
AcyI	GRCGYC	2 cut(s)	100, 208
AfaI	GTAC	3 cut(s)	152, 483, 682
AfiI	CCNNNNNNNGG	2 cut(s)	114, 492
AflIII	ACRYGT	1 cut(s)	683
AgsI	TTSAA	3 cut(s)	361, 370, 376
AluBI	AGCT	3 cut(s)	120, 169, 192
AluI	AGCT	3 cut(s)	120, 169, 192
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	215, 631
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	340, 406, 413
ApeKI	GCWGC	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	4 cut(s)	37, 51, 102, 642
AspS9I	GGNCC	2 cut(s)	20, 413
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	99, 158
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	50, 581
BceAI	ACGGC	2 cut(s)	92, 421
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	215, 631
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	645
BisI	GCNGC	3 cut(s)	170, 343, 409
BlsI	GCNGC	3 cut(s)	171, 344, 410
BmcAI	AGTACT	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	20, 413
BmiI	GGNNCC	4 cut(s)	22, 101, 160, 535
BmsI	GCATC	4 cut(s)	220, 232, 448, 499
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	100, 208
BsaJI	CCNNGG	1 cut(s)	409
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 109, 110, 139, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 492
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	114, 492
BseRI	GAGGAG	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	342, 408, 415
BshNI	GGYRCC	2 cut(s)	99, 158
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	114, 492
BsmAI	GTCTC	2 cut(s)	215, 631
BsmBI	CGTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	342, 408, 415
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	61, 175, 619
BspACI	CCGC	4 cut(s)	245, 343, 409, 411
BspANI	GGCC	3 cut(s)	342, 408, 415
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	4 cut(s)	22, 101, 160, 535
BspMI	ACCTGC	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	99, 158
BsrBI	CCGCTC	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	61, 175, 619
BssNI	GRCGYC	2 cut(s)	100, 208
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	100, 208
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	4 cut(s)	37, 51, 102, 642
BstKTI	GATC	3 cut(s)	64, 178, 622
BstMAI	GTCTC	2 cut(s)	215, 631
BstMBI	GATC	3 cut(s)	61, 175, 619
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 348
BstNSI	RCATGY	2 cut(s)	49, 687
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstZI	CGGCCG	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	342, 408, 415
BtgI	CCRYGG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	183, 439
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	413
CfoI	GCGC	4 cut(s)	37, 51, 102, 642
Cfr13I	GGNCC	2 cut(s)	20, 413
Cfr42I	CCGCGG	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	151, 482, 681
CviAII	CATG	6 cut(s)	46, 73, 320, 538, 542, 684
CviJI	RGCY	7 cut(s)	120, 169, 192, 263, 342, 408, 415
CviKI_1	RGCY	7 cut(s)	120, 169, 192, 263, 342, 408, 415
CviQI	GTAC	3 cut(s)	151, 482, 681
DinI	GGCGCC	1 cut(s)	101
DpnI	GATC	3 cut(s)	63, 177, 621
DpnII	GATC	3 cut(s)	61, 175, 619
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	340, 406
EagI	CGGCCG	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	20
Eco52I	CGGCCG	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	122
EgeI	GGCGCC	1 cut(s)	101
EheI	GGCGCC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	6 cut(s)	49, 76, 323, 541, 545, 687
FatI	CATG	6 cut(s)	45, 72, 319, 537, 541, 683
FauI	CCCGC	2 cut(s)	238, 404
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	170, 343, 409
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	170, 343, 409
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	4 cut(s)	36, 50, 101, 641
GluI	GCNGC	3 cut(s)	170, 343, 409
GsuI	CTGGAG	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	342, 408, 415
HhaI	GCGC	4 cut(s)	37, 51, 102, 642
Hin1I	GRCGYC	2 cut(s)	100, 208
Hin1II	CATG	6 cut(s)	49, 76, 323, 541, 545, 687
Hin6I	GCGC	4 cut(s)	35, 49, 100, 640
HinP1I	GCGC	4 cut(s)	35, 49, 100, 640
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	548, 579
Hpy188I	TCNGA	3 cut(s)	206, 215, 241
Hpy188III	TCNNGA	5 cut(s)	65, 455, 559, 605, 617
Hpy8I	GTNNAC	2 cut(s)	548, 579
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	208, 448
HpyCH4V	TGCA	3 cut(s)	16, 512, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 348
HpySE526I	ACGT	2 cut(s)	208, 448
Hsp92I	GRCGYC	2 cut(s)	100, 208
Hsp92II	CATG	6 cut(s)	49, 76, 323, 541, 545, 687
HspAI	GCGC	4 cut(s)	35, 49, 100, 640
KasI	GGCGCC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	175
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	61, 175, 619
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	17, 108, 116, 516, 572, 630, 650
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	4 cut(s)	220, 232, 448, 499
MaeII	ACGT	2 cut(s)	208, 448
MalI	GATC	3 cut(s)	63, 177, 621
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	3 cut(s)	61, 175, 619
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	238, 261
MnlI	CCTC	7 cut(s)	34, 82, 277, 362, 508, 566, 658
Mph1103I	ATGCAT	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	111, 141, 266
MslI	CAYNNNNRTG	3 cut(s)	324, 432, 495
MspA1I	CMGCKG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	600
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	57, 348
NarI	GGCGCC	1 cut(s)	100
NdeII	GATC	3 cut(s)	61, 175, 619
NlaIII	CATG	6 cut(s)	49, 76, 323, 541, 545, 687
NlaIV	GGNNCC	4 cut(s)	22, 101, 160, 535
NsbI	TGCGCA	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	2 cut(s)	49, 687
PaeR7I	CTCGAG	1 cut(s)	193
PciI	ACATGT	1 cut(s)	683
PctI	GAATGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	171, 344, 410
PluTI	GGCGCC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	20
PscI	ACATGT	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	4 cut(s)	22, 101, 160, 535
PspPI	GGNCC	2 cut(s)	20, 413
PspPPI	RGGWCCY	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	193
RsaI	GTAC	3 cut(s)	152, 483, 682
RsaNI	GTAC	3 cut(s)	151, 482, 681
RseI	CAYNNNNRTG	3 cut(s)	324, 432, 495
SacI	GAGCTC	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	111, 141, 266
SatI	GCNGC	3 cut(s)	170, 343, 409
Sau3AI	GATC	3 cut(s)	61, 175, 619
Sau96I	GGNCC	2 cut(s)	20, 413
ScaI	AGTACT	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	8 cut(s)	122, 171, 194, 211, 328, 451, 558, 639
SfaNI	GCATC	4 cut(s)	220, 232, 448, 499
SfcI	CTRYAG	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	101
Sfr274I	CTCGAG	1 cut(s)	193
Sfr303I	CCGCGG	1 cut(s)	412
SgrBI	CCGCGG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	324, 432, 495
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SsiI	CCGC	4 cut(s)	245, 343, 409, 411
SspDI	GGCGCC	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	2 cut(s)	211, 451
TaqI	TCGA	3 cut(s)	66, 135, 194
TatI	WGTACW	2 cut(s)	150, 680
TauI	GCSGC	2 cut(s)	345, 411
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	3 cut(s)	111, 141, 266
Tru9I	TTAA	3 cut(s)	111, 141, 266
TscAI	CASTG	2 cut(s)	190, 439
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	336, 416, 479, 640
TspRI	CASTG	2 cut(s)	190, 439
VpaK11BI	GGWCC	1 cut(s)	20
XceI	RCATGY	2 cut(s)	49, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	365
ZraI	GACGTC	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.