Rorug05G0026300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000586
Physical Location & Seq
Forward (+)
1714110 .. 1715275
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0026300.1

Sequence Viewer

Length: 579 bp
ATGTCATTAGTGGGATTCAAACTCATGCTGAAAAGAACCCCTCAAAGAGCTCCGAGGCCCCCGGAAGCCGGTGGCCTGAGACGGTTACCTCAGTGGGCAGCCCTCAAGGCCAGCTCTGACCTGATGTTGATGATGGAAGTCAAGGAACCGAAACCGATCCGCCTCGATTCAGAAATTCGTCGAACTCGGTTTGGGCCTGATAACCGACCCGGCCCGAATATGCCCAGGCCTAGGCCAGAGGCAGTGAGGGAATTAGAGTGCCCTAATTGTAAAAGATTGTTCTGTGCGCAGTTTAAGGTTTCTTGGCACGCCGGGATTATTTATGCCGAGTTTAAGAGGCTGAATAAAGATGATACTGAAAAGGATGATCTCATTATGGAGAAACTTGGTTACAAGAAGCACTGGAGAAAGTGCCCAACTTGTGGGATCTATGTGGAAAGATCAGGAGGCTGCACAACAATACGATGCAGATCTAATCCAGAGCGGAGCTCCGCTTTGAAAATGAAGTGTAAAGTTCGAGTTTTAGGTCACTTTTCTGTCGCATATCCACATCTTGACCGTTCAGTTTTTAGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

192

Amino Acids

22.27

Weight (kDa)

10.03

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 484
AciI CCGC 3 cut(s) 160, 484, 492
AclWI GGATC 2 cut(s) 151, 434
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 3 cut(s) 68, 231, 422
AgsI TTSAA 2 cut(s) 19, 499
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 50, 114, 489
AluI AGCT 3 cut(s) 50, 114, 489
Alw21I GWGCWC 2 cut(s) 52, 491
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 151, 434
AoxI GGCC 7 cut(s) 56, 73, 108, 194, 211, 227, 233
ApeKI GCWGC 2 cut(s) 98, 450
ApoI RAATTY 1 cut(s) 174
AspA2I CCTAGG 1 cut(s) 230
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 3 cut(s) 57, 194, 212
AsuC2I CCSGG 3 cut(s) 62, 210, 313
AvrII CCTAGG 1 cut(s) 230
BaeGI GKGCMC 2 cut(s) 263, 416
BanII GRGCYC 2 cut(s) 52, 491
Bbv12I GWGCWC 2 cut(s) 52, 491
BbvI GCAGC 2 cut(s) 110, 437
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 3 cut(s) 62, 210, 313
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 231, 577
BglI GCCNNNNNGGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 470
BisI GCNGC 2 cut(s) 99, 451
BlnI CCTAGG 1 cut(s) 230
BlsI GCNGC 2 cut(s) 100, 452
Bme1390I CCNGG 4 cut(s) 62, 210, 226, 313
BmgT120I GGNCC 3 cut(s) 57, 194, 212
BmiI GGNNCC 2 cut(s) 59, 147
BmrFI CCNGG 4 cut(s) 62, 210, 226, 313
BmsI GCATC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 3 cut(s) 62, 210, 313
BsaBI GATNNNNATC 1 cut(s) 469
BsaJI CCNNGG 4 cut(s) 53, 60, 224, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 231, 422
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 469
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 4 cut(s) 53, 60, 224, 230
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 469
BseLI CCNNNNNNNGG 3 cut(s) 68, 231, 422
BseMII CTCAG 2 cut(s) 68, 104
BseNI ACTGG 1 cut(s) 407
BseSI GKGCMC 2 cut(s) 263, 416
BseXI GCAGC 2 cut(s) 110, 437
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 7 cut(s) 58, 75, 110, 196, 213, 229, 235
BsiHKAI GWGCWC 2 cut(s) 52, 491
BsiSI CCGG 4 cut(s) 62, 69, 210, 312
BslI CCNNNNNNNGG 3 cut(s) 68, 231, 422
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 7 cut(s) 58, 75, 110, 196, 213, 229, 235
Bsp1286I GDGCHC 4 cut(s) 52, 263, 416, 491
Bsp143I GATC 5 cut(s) 156, 367, 426, 440, 470
BspACI CCGC 3 cut(s) 160, 484, 492
BspANI GGCC 7 cut(s) 58, 75, 110, 196, 213, 229, 235
BspCNI CTCAG 2 cut(s) 69, 103
BspLI GGNNCC 2 cut(s) 59, 147
BspPI GGATC 2 cut(s) 151, 434
BsrBI CCGCTC 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 53, 60, 224, 230
BssMI GATC 5 cut(s) 156, 367, 426, 440, 470
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 84, 560
BstC8I GCNNGC 2 cut(s) 112, 309
BstDEI CTNAG 2 cut(s) 77, 90
BstEII GGTNACC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 5 cut(s) 159, 370, 429, 443, 473
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 5 cut(s) 156, 367, 426, 440, 470
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 84
BstSCI CCNGG 4 cut(s) 60, 208, 224, 311
BstSLI GKGCMC 2 cut(s) 263, 416
BstV1I GCAGC 2 cut(s) 110, 437
BstX2I RGATCY 2 cut(s) 426, 470
BstYI RGATCY 2 cut(s) 426, 470
BsuRI GGCC 7 cut(s) 58, 75, 110, 196, 213, 229, 235
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 98, 249, 400
Cac8I GCNNGC 2 cut(s) 112, 309
CfoI GCGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 57, 194, 212
Csp6I GTAC 1 cut(s) 574
CviAII CATG 1 cut(s) 25
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 77, 90
DpnI GATC 5 cut(s) 158, 369, 428, 442, 472
DpnII GATC 5 cut(s) 156, 367, 426, 440, 470
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 2 cut(s) 50, 489
Eco130I CCWWGG 1 cut(s) 230
Eco147I AGGCCT 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 52, 491
Eco53kI GAGCTC 2 cut(s) 50, 489
Eco91I GGTNACC 1 cut(s) 84
EcoICRI GAGCTC 2 cut(s) 50, 489
EcoO109I RGGNCCY 1 cut(s) 57
EcoO65I GGTNACC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 230
EcoT38I GRGCYC 2 cut(s) 52, 491
ErhI CCWWGG 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 28
FaiI YATR 6 cut(s) 26, 221, 324, 377, 432, 544
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 99, 451
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 2 cut(s) 52, 491
Fsp4HI GCNGC 2 cut(s) 99, 451
FspBI CTAG 2 cut(s) 231, 577
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
GluI GCNGC 2 cut(s) 99, 451
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 7 cut(s) 58, 75, 110, 196, 213, 229, 235
HapII CCGG 4 cut(s) 62, 69, 210, 312
HhaI GCGC 1 cut(s) 289
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 2 cut(s) 15, 167
HpaII CCGG 4 cut(s) 62, 69, 210, 312
Hpy188I TCNGA 3 cut(s) 54, 118, 172
Hpy188III TCNNGA 3 cut(s) 444, 479, 554
Hpy99I CGWCG 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 84, 560
HpyCH4V TGCA 2 cut(s) 453, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 77, 90
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 5 cut(s) 156, 367, 426, 440, 470
LmnI GCTCC 3 cut(s) 55, 486, 494
Lsp1109I GCAGC 2 cut(s) 110, 437
LweI GCATC 1 cut(s) 455
MaeI CTAG 2 cut(s) 231, 577
MaeIII GTNAC 3 cut(s) 84, 389, 527
MalI GATC 5 cut(s) 158, 369, 428, 442, 472
MbiI CCGCTC 1 cut(s) 484
MboI GATC 5 cut(s) 156, 367, 426, 440, 470
MflI RGATCY 2 cut(s) 426, 470
MhlI GDGCHC 4 cut(s) 52, 263, 416, 491
MluCI AATT 3 cut(s) 174, 251, 265
MnlI CCTC 9 cut(s) 48, 51, 99, 113, 173, 232, 240, 330, 440
MseI TTAA 2 cut(s) 294, 333
MspI CCGG 4 cut(s) 62, 69, 210, 312
MspR9I CCNGG 4 cut(s) 62, 210, 226, 313
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 3 cut(s) 62, 210, 313
NdeII GATC 5 cut(s) 156, 367, 426, 440, 470
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 59, 147
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 527
NsbI TGCGCA 1 cut(s) 288
PceI AGGCCT 1 cut(s) 229
PfeI GAWTC 2 cut(s) 15, 167
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 2 cut(s) 100, 452
Psp124BI GAGCTC 2 cut(s) 52, 491
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 59, 147
PspPI GGNCC 3 cut(s) 57, 194, 212
PsuI RGATCY 2 cut(s) 426, 470
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SacI GAGCTC 2 cut(s) 52, 491
SaqAI TTAA 2 cut(s) 294, 333
SatI GCNGC 2 cut(s) 99, 451
Sau3AI GATC 5 cut(s) 156, 367, 426, 440, 470
Sau96I GGNCC 3 cut(s) 57, 194, 212
ScrFI CCNGG 4 cut(s) 62, 210, 226, 313
SduI GDGCHC 4 cut(s) 52, 263, 416, 491
SetI ASST 8 cut(s) 52, 91, 116, 123, 300, 491, 529, 575
SfaNI GCATC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 174, 251, 265
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 3 cut(s) 160, 484, 492
SspMI CTAG 2 cut(s) 231, 577
SstI GAGCTC 2 cut(s) 52, 491
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 4 cut(s) 60, 208, 224, 311
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 84, 560
TaqI TCGA 3 cut(s) 165, 181, 517
TasI AATT 3 cut(s) 174, 251, 265
TfiI GAWTC 2 cut(s) 15, 167
Tru1I TTAA 2 cut(s) 294, 333
Tru9I TTAA 2 cut(s) 294, 333
TscAI CASTG 3 cut(s) 98, 249, 407
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 98, 450
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 518
TspRI CASTG 3 cut(s) 98, 249, 407
Van91I CCANNNNNTGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 174
XmaJI CCTAGG 1 cut(s) 230
XspI CTAG 2 cut(s) 231, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.