Rh5BG118700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000586
Physical Location & Seq
Forward (+)
11171059 .. 11172627
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG118700.1

Sequence Viewer

Length: 783 bp
ATGTGGAGCAAGATTGACATGCGAAACAATGGTGAGATTAACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTGATCGGAGCTCCGGTTATCTTGTTGATATTAACATCGAGTACATCGGCACCGATGAGCTGCTCGAATACGTCACTGAAAGTTCGCGTGGAATCAGACGCCTCCGCCTATTATATTGTGATGACATATCTGATGGGGGATTGAGTAAAGTGGCTTCAAAACTTCCGTTGTTGGAGGAACTTGACATTTCTCTATGTCAGAATATCTCGCATAAAGCTGTGGAAATGGTTGGGAGCTCTTGCCCTCTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTCTCACATGATGGACGTGGACCTTATGAGTTTCATTTCAGTAATCATTATCCACGTATTCTTAAAGCTTACCGGAAAAGAAATCAAGTAACTTTTCATGGGATTTTAGATTACGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTGGCTCACTTGATCTGCGCCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGCTTATTGCTTTAAATGGACAGAACTCTCAGACCATGTTACAGCGTTGATACTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

260

Amino Acids

29.96

Weight (kDa)

5.56

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 64, 178
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 78, 587
AgsI TTSAA 4 cut(s) 231, 325, 334, 340
AjiI CACGTC 1 cut(s) 374
AluBI AGCT 7 cut(s) 84, 133, 290, 309, 425, 526, 725
AluI AGCT 7 cut(s) 84, 133, 290, 309, 425, 526, 725
Alw21I GWGCWC 2 cut(s) 86, 311
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 86, 311
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
Bbv12I GWGCWC 2 cut(s) 86, 311
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 200, 362, 545
BceAI ACGGC 1 cut(s) 56
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 489
BglII AGATCT 1 cut(s) 716
BisI GCNGC 2 cut(s) 64, 134
BlsI GCNGC 2 cut(s) 65, 135
Bme18I GGWCC 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 124, 499
BmsI GCATC 1 cut(s) 463
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 577
BsaAI YACGTR 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 172
BsaWI WCCGGW 2 cut(s) 86, 429
BsaXI ACNNNNNCTCC 6 cut(s) 44, 73, 74, 103, 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 587
BseLI CCNNNNNNNGG 2 cut(s) 78, 587
BseMII CTCAG 2 cut(s) 684, 765
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 86, 311
BsiSI CCGG 2 cut(s) 87, 430
BslI CCNNNNNNNGG 2 cut(s) 78, 587
Bsp1286I GDGCHC 2 cut(s) 86, 311
Bsp143I GATC 4 cut(s) 76, 583, 598, 716
BspACI CCGC 2 cut(s) 64, 178
BspCNI CTCAG 2 cut(s) 685, 764
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 124, 499
BspT107I GGYRCC 1 cut(s) 122
BssMI GATC 4 cut(s) 76, 583, 598, 716
BssNI GRCGYC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 777
BstACI GRCGYC 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 693, 751, 780
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 4 cut(s) 79, 586, 601, 719
BstMBI GATC 4 cut(s) 76, 583, 598, 716
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 716
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 1 cut(s) 716
BtrI CACGTC 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 147, 690
CfoI GCGC 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 115
CviAII CATG 7 cut(s) 19, 365, 455, 502, 506, 683, 758
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 693, 751, 780
DpnI GATC 4 cut(s) 78, 585, 600, 718
DpnII GATC 4 cut(s) 76, 583, 598, 716
DraI TTTAAA 1 cut(s) 736
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 2 cut(s) 84, 309
Eco24I GRGCYC 2 cut(s) 86, 311
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 2 cut(s) 84, 309
Eco57I CTGAAG 1 cut(s) 741
EcoICRI GAGCTC 2 cut(s) 84, 309
EcoT22I ATGCAT 1 cut(s) 507
EcoT38I GRGCYC 2 cut(s) 86, 311
FaeI CATG 7 cut(s) 22, 368, 458, 505, 509, 686, 761
FatI CATG 7 cut(s) 18, 364, 454, 501, 505, 682, 757
Fnu4HI GCNGC 2 cut(s) 64, 134
FriOI GRGCYC 2 cut(s) 86, 311
Fsp4HI GCNGC 2 cut(s) 64, 134
FspBI CTAG 1 cut(s) 714
GlaI GCGC 1 cut(s) 605
GluI GCNGC 2 cut(s) 64, 134
GsuI CTGGAG 1 cut(s) 506
HapII CCGG 2 cut(s) 87, 430
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 606
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 7 cut(s) 22, 368, 458, 505, 509, 686, 761
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HindIII AAGCTT 2 cut(s) 423, 723
HinfI GANTC 2 cut(s) 165, 686
HpaII CCGG 2 cut(s) 87, 430
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 377, 512, 543
Hpy188I TCNGA 6 cut(s) 81, 170, 205, 273, 721, 754
Hpy188III TCNNGA 2 cut(s) 569, 581
Hpy8I GTNNAC 3 cut(s) 377, 512, 543
HpyCH4III ACNGT 1 cut(s) 777
HpyCH4IV ACGT 3 cut(s) 144, 373, 412
HpyCH4V TGCA 2 cut(s) 476, 505
HpyF3I CTNAG 3 cut(s) 693, 751, 780
HpySE526I ACGT 3 cut(s) 144, 373, 412
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 7 cut(s) 22, 368, 458, 505, 509, 686, 761
HspAI GCGC 1 cut(s) 604
Kzo9I GATC 4 cut(s) 76, 583, 598, 716
LmnI GCTCC 4 cut(s) 6, 81, 89, 306
LpnPI CCDG 5 cut(s) 100, 443, 480, 536, 594
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 714
MaeII ACGT 3 cut(s) 144, 373, 412
MaeIII GTNAC 3 cut(s) 145, 445, 760
MalI GATC 4 cut(s) 78, 585, 600, 718
MboI GATC 4 cut(s) 76, 583, 598, 716
MboII GAAGA 1 cut(s) 654
MflI RGATCY 1 cut(s) 716
MhlI GDGCHC 2 cut(s) 86, 311
MluCI AATT 3 cut(s) 660, 668, 704
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 8 cut(s) 46, 185, 241, 327, 472, 530, 622, 688
Mph1103I ATGCAT 1 cut(s) 507
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 5 cut(s) 39, 105, 420, 621, 735
MspI CCGG 2 cut(s) 87, 430
MvnI CGCG 1 cut(s) 160
NdeII GATC 4 cut(s) 76, 583, 598, 716
NlaIII CATG 7 cut(s) 22, 368, 458, 505, 509, 686, 761
NlaIV GGNNCC 2 cut(s) 124, 499
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 165, 686
PkrI GCNGC 2 cut(s) 65, 135
Ppu21I YACGTR 1 cut(s) 413
Psp124BI GAGCTC 2 cut(s) 86, 311
PspN4I GGNNCC 2 cut(s) 124, 499
PspPI GGNCC 1 cut(s) 377
PsuI RGATCY 1 cut(s) 716
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SacI GAGCTC 2 cut(s) 86, 311
SaqAI TTAA 5 cut(s) 39, 105, 420, 621, 735
SatI GCNGC 2 cut(s) 64, 134
Sau3AI GATC 4 cut(s) 76, 583, 598, 716
Sau96I GGNCC 1 cut(s) 377
SduI GDGCHC 2 cut(s) 86, 311
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 3 cut(s) 660, 668, 704
SsiI CCGC 2 cut(s) 64, 178
SspMI CTAG 1 cut(s) 714
SstI GAGCTC 2 cut(s) 86, 311
TaaI ACNGT 1 cut(s) 777
TaiI ACGT 3 cut(s) 147, 376, 415
TaqI TCGA 2 cut(s) 111, 138
TasI AATT 3 cut(s) 660, 668, 704
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 165, 686
Tru1I TTAA 5 cut(s) 39, 105, 420, 621, 735
Tru9I TTAA 5 cut(s) 39, 105, 420, 621, 735
TscAI CASTG 2 cut(s) 154, 697
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 4 cut(s) 380, 443, 604, 669
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 2 cut(s) 154, 697
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 704
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.