Rh5BG118800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000586
Physical Location & Seq
Forward (+)
11172703 .. 11173742
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG118800.1

Sequence Viewer

Length: 480 bp
ATGTGGCGCACCATTGACATGTGCAATAATTTTGATATTAACAACTACAAGCCCTTCTTCTTCCATGAGTTGTGCGAACATGCAATTGAACGTAGCTGTGGTAAGATGGTCGATATCAATGTTGAGAACTTTGGAACCAATGACGTCCTTAAATATCATATCGCTGAGAGTTCTACTGGACTCAAACGCCTCAGGTTAGTGACTTCTTTTAGAATAACAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCGCTGTTGGAGGACCTTGACCTTTCAATACATGAGGATGTCTCACATGAAACTCTAGCATTGGTTGGACGCTCATGCCCTCTTCTGAAATCATTGAAATTTAACAAAAGGTGGTTTGATGAAGGCCGATATAATAACCGGTACAAGCTTGAGCGGAATGACTGTGCACTTGCTATAGCAGGGACGATGCATGGTTTACACCACCTCATGCTTTTAGGAATACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

159

Amino Acids

18.52

Weight (kDa)

6.49

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 406
AciI CCGC 2 cut(s) 254, 406
AcsI RAATTY 2 cut(s) 248, 350
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 18
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 89, 246, 279, 349
AluBI AGCT 2 cut(s) 96, 400
AluI AGCT 2 cut(s) 96, 400
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 417
AoxI GGCC 1 cut(s) 376
ApaLI GTGCAC 1 cut(s) 417
ApoI RAATTY 2 cut(s) 248, 350
AsiGI ACCGGT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpuEI CTTGAG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 156, 205
BseNI ACTGG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 421
BshFI GGCC 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 421
BspACI CCGC 2 cut(s) 254, 406
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 157, 204
BspLI GGNNCC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 165, 191
BstF5I GGATG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 298
BstNSI RCATGY 2 cut(s) 22, 83
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 394
CspAI ACCGGT 1 cut(s) 390
CviAII CATG 8 cut(s) 19, 65, 80, 284, 299, 327, 443, 460
CviJI RGCY 5 cut(s) 52, 96, 242, 378, 400
CviKI_1 RGCY 5 cut(s) 52, 96, 242, 378, 400
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 165, 191
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 265
EcoRV GATATC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 444
FaeI CATG 8 cut(s) 22, 68, 83, 287, 302, 330, 446, 463
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 448
FatI CATG 8 cut(s) 18, 64, 79, 283, 298, 326, 442, 459
FokI GGATG 1 cut(s) 302
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 391
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 8 cut(s) 22, 68, 83, 287, 302, 330, 446, 463
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 180
HpaII CCGG 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 419, 449
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 419, 449
HpyAV CCTTC 3 cut(s) 64, 218, 368
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 91, 144
HpyCH4V TGCA 4 cut(s) 24, 83, 419, 442
HpyF3I CTNAG 2 cut(s) 165, 191
HpySE526I ACGT 2 cut(s) 91, 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 8 cut(s) 22, 68, 83, 287, 302, 330, 446, 463
HspAI GCGC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 162, 178, 404, 417
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 91, 144
MaeIII GTNAC 1 cut(s) 199
MbiI CCGCTC 1 cut(s) 406
MboII GAAGA 3 cut(s) 49, 52, 326
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 4 cut(s) 28, 84, 248, 350
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 240, 298
MnlI CCTC 5 cut(s) 200, 256, 280, 342, 467
Mph1103I ATGCAT 1 cut(s) 444
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 39, 150, 354
MslI CAYNNNNRTG 2 cut(s) 17, 288
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 391
MunI CAATTG 1 cut(s) 84
NlaIII CATG 8 cut(s) 22, 68, 83, 287, 302, 330, 446, 463
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 444
NspI RCATGY 2 cut(s) 22, 83
PciI ACATGT 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 228
PinAI ACCGGT 1 cut(s) 390
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 17, 288
SaqAI TTAA 3 cut(s) 39, 150, 354
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 421
SetI ASST 9 cut(s) 94, 98, 147, 197, 270, 276, 365, 402, 459
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 17, 288
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 28, 84, 248, 350
SsiI CCGC 2 cut(s) 254, 406
SspMI CTAG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 94, 147
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 28, 84, 248, 350
Tru1I TTAA 3 cut(s) 39, 150, 354
Tru9I TTAA 3 cut(s) 39, 150, 354
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 237, 315, 387
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 248, 350
XceI RCATGY 2 cut(s) 22, 83
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.