Rh6AG498200

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
67382609 .. 67382930
322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG498200.1

Sequence Viewer

Length: 285 bp
ATGCTTTTGAAATCACTGAAGTTCAACAAACTGTTCGGAGATTACCAAAATATACCTGAGCATAATGACTGTGCACTTGCTATAGCAGGAACGATGCACGGTAATGAAGGGTTGTGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATTTGCGACGGTGCTTGAATCTTACATTGGAGGGTGATGTGGGTAGAAGATGTGTCGAGCGAATTCAGAAGTTAAGGCTTCCCCTGGATTCCATCGAGGACATAGACCCCTCATACAATGTGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

4.99

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 3 cut(s) 10, 25, 172
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
Alw21I GWGCWC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 2 cut(s) 122, 254
BciT130I CCWGG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 4 cut(s) 33, 71, 101, 165
BstDEI CTNAG 1 cut(s) 57
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 14
CviJI RGCY 1 cut(s) 232
CviKI_1 RGCY 1 cut(s) 232
DdeI CTNAG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 237
FaiI YATR 5 cut(s) 53, 63, 83, 257, 268
HinfI GANTC 3 cut(s) 146, 172, 242
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 38, 222
Hpy188III TCNNGA 2 cut(s) 125, 143
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 4 cut(s) 33, 71, 101, 165
HpyCH4V TGCA 3 cut(s) 74, 97, 119
HpyF3I CTNAG 1 cut(s) 57
LpnPI CCDG 4 cut(s) 69, 72, 224, 251
LweI GCATC 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 120, 216, 280
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 4 cut(s) 147, 178, 244, 274
MseI TTAA 2 cut(s) 227, 283
MslI CAYNNNNRTG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 172, 242
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 227, 283
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 76
SetI ASST 1 cut(s) 58
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 120, 216, 280
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 33, 71, 101, 165
TaqI TCGA 2 cut(s) 210, 249
TasI AATT 3 cut(s) 120, 216, 280
TfiI GAWTC 2 cut(s) 172, 242
Tru1I TTAA 2 cut(s) 227, 283
Tru9I TTAA 2 cut(s) 227, 283
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 21
VneI GTGCAC 1 cut(s) 72
XapI RAATTY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.