Rh6DG501000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000586
Physical Location & Seq
Reverse (-)
65702876 .. 65708536
5661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG501000.1

Sequence Viewer

Length: 1434 bp
ATGGGCGACACCGCAAAGAGACGGCAGCGAGACTGGGCGGAGCTCCCTGACATCGACACGGAGTCGATACTGTCGCGGCTGGGCGCCATTGACATGTTGGAGAGCTCTCAGAAGGTTTGCATGAAATGGCGCAAAATCTATAAGAACAACACTCGGATTTGGCGCACCGTCGACATGAGAAATGATGGTGATTTTCCATACGACCTGGAGATTATGTGCTTCCACGCCGTTGATCGCAGCCGCGGTGAGCTCGTCGATATTAACATCGAGCACTTCGGCACCAATGAGCTGCTTCACTATATCACTGATAGTTTGTATTTGATCAGATCGAAATTTGTTTACTGGATTTCTTTATTTGTGACATTGCTAACATATGCAACGAAAACATTTCATAGATCAAGGGGAATCAGGCGCCTCCGACTATTGAATTGCAATGGAGTATCAAGTGAGGGATTGGCTGAAGTGGCTCTGAAACTTCCGTTGTTGGAGGAACTTGACATTACTCTATGCGCTAACATCTCACATGAAGCTATAAGAGTGGTTGGGCAGTCTTGCCCTCTTTTGAAATCATTCAAGTTAAACAAAGAGTGGTGTAGATTCTCTGGACATGAGCCTTACGCGTATCATTTTAAGTACAATGGAGACGCATTTGCTATAGCAGAAACAATGAGAGGTTTACACCACCTCCAGCTTTTTGGGAATAAGTTGAGAGATGATGGCTTGAGAAATATTCTTGATTCTTGTCCCCATCTTTGTTCCCTTGATCTACGACACTGTTTTACTCTTAATCTGGACGGAGACTTGGATAGAATTTGTGCTGAACGAATTGAAAAACTGCCCTTCTACTGGTATAGCTTGTGTAAAAGTGCCATTGGACGTAGCTGTGGTAATTTGGTTGATATCAATATCGAGAACTTTGGCACCAATTCTCTCCTCTGCTGTCTTGCTGAGAGGTCAAGTGGACTCAAACGCCTTCGTTTAGTGGGTTGTCATGAAATTACAGATGAGGGATTCCGTGCAGTGGCTTCGAGATTTCCATTATTGGAGGACCTTGACATTACATTGGATGAGGACATCTTACATGAAACTCTAGCATTGGTTGGGCGCACATGCCCTCTTTTGAAATCACTGAAGTTCAACAAACTGTTCGGAGATTACCAAAATATACCTGAGCATAATGATTGTGCACTTGCTATAGCAGGAACGATGCACGGGTTACACCACCTCATGCTTTTCAGGAATCAAATGAGTAATGAAGGGTTGTGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATTTGCGACGGTGCTTGAATCTTACATTGGAGAGAGATGTGGGTAGAAGATGTGTCGAGCGAATTCAAAAGTTAAGGCTTCCCCTGGATTCCATCGAGGACATAGACCCCTCATACAATGTGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

477

Amino Acids

54.78

Weight (kDa)

6.23

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 83, 278, 411, 920
AccI GTMKAC 1 cut(s) 171
AccII CGCG 3 cut(s) 76, 243, 620
AciI CCGC 5 cut(s) 12, 38, 76, 241, 243
AcsI RAATTY 3 cut(s) 332, 810, 1365
AcuI CTGAAG 2 cut(s) 480, 1151
AcyI GRCGYC 2 cut(s) 84, 412
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 846, 1021
AflIII ACRYGT 2 cut(s) 93, 618
AgsI TTSAA 8 cut(s) 427, 565, 574, 830, 1123, 1138, 1321, 1370
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 204, 1386
AjuI GAANNNNNNNTTGG 2 cut(s) 1313, 1345
AluBI AGCT 8 cut(s) 43, 105, 250, 289, 530, 691, 855, 882
AluI AGCT 8 cut(s) 43, 105, 250, 289, 530, 691, 855, 882
Alw21I GWGCWC 5 cut(s) 45, 107, 252, 273, 1189
Alw26I GTCTC 4 cut(s) 13, 24, 636, 792
Alw44I GTGCAC 1 cut(s) 1185
ApaLI GTGCAC 1 cut(s) 1185
ApeKI GCWGC 3 cut(s) 25, 237, 289
ApoI RAATTY 3 cut(s) 332, 810, 1365
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 6 cut(s) 86, 132, 165, 414, 512, 1107
AspS9I GGNCC 1 cut(s) 1048
AsuHPI GGTGA 2 cut(s) 200, 257
AvaII GGWCC 1 cut(s) 1048
BaeGI GKGCMC 1 cut(s) 1189
BanI GGYRCC 4 cut(s) 83, 278, 411, 920
BanII GRGCYC 3 cut(s) 45, 107, 252
Bbv12I GWGCWC 5 cut(s) 45, 107, 252, 273, 1189
BbvI GCAGC 3 cut(s) 37, 249, 276
BccI CCATC 5 cut(s) 179, 710, 756, 1271, 1403
BceAI ACGGC 2 cut(s) 38, 212
BcgI CGANNNNNNTGC 2 cut(s) 1008, 1042
BciT130I CCWGG 2 cut(s) 206, 1388
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 4 cut(s) 13, 24, 636, 792
BfaI CTAG 1 cut(s) 1091
BfmI CTRYAG 2 cut(s) 654, 1194
BfoI RGCGCY 2 cut(s) 87, 415
BisI GCNGC 5 cut(s) 26, 77, 238, 241, 290
BlsI GCNGC 5 cut(s) 27, 78, 239, 242, 291
Bme1390I CCNGG 2 cut(s) 206, 1388
Bme18I GGWCC 1 cut(s) 1048
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 1048
BmiI GGNNCC 4 cut(s) 85, 280, 413, 922
BmrFI CCNGG 2 cut(s) 206, 1388
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 1197
BmuI ACTGGG 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 227, 671
Bpu10I CCTNAGC 1 cut(s) 1170
BpuEI CTTGAG 2 cut(s) 742, 1313
BsaHI GRCGYC 2 cut(s) 84, 412
BsaJI CCNNGG 2 cut(s) 241, 1386
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 669, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 846, 1021
Bse1I ACTGG 3 cut(s) 38, 347, 851
Bse3DI GCAATG 2 cut(s) 362, 439
BseBI CCWGG 2 cut(s) 206, 1388
BseDI CCNNGG 2 cut(s) 241, 1386
BseGI GGATG 1 cut(s) 1072
BseLI CCNNNNNNNGG 2 cut(s) 846, 1021
BseMI GCAATG 2 cut(s) 362, 439
BseMII CTCAG 3 cut(s) 122, 939, 1161
BseNI ACTGG 3 cut(s) 38, 347, 851
BseRI GAGGAG 1 cut(s) 923
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 3 cut(s) 37, 249, 276
BseYI CCCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 3 cut(s) 76, 243, 620
BshNI GGYRCC 4 cut(s) 83, 278, 411, 920
BsiHKAI GWGCWC 5 cut(s) 45, 107, 252, 273, 1189
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 846, 1021
BsmAI GTCTC 4 cut(s) 13, 24, 636, 792
BsmBI CGTCTC 2 cut(s) 13, 636
BsmFI GGGAC 1 cut(s) 729
Bsp1286I GDGCHC 5 cut(s) 45, 107, 252, 273, 1189
Bsp143I GATC 5 cut(s) 232, 321, 326, 395, 763
BspACI CCGC 5 cut(s) 12, 38, 76, 241, 243
BspCNI CTCAG 3 cut(s) 121, 940, 1162
BspFNI CGCG 3 cut(s) 76, 243, 620
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 4 cut(s) 85, 280, 413, 922
BspT107I GGYRCC 4 cut(s) 83, 278, 411, 920
BsrDI GCAATG 2 cut(s) 362, 439
BsrI ACTGG 3 cut(s) 38, 347, 851
BssECI CCNNGG 2 cut(s) 241, 1386
BssMI GATC 5 cut(s) 232, 321, 326, 395, 763
BssNI GRCGYC 2 cut(s) 84, 412
Bst2UI CCWGG 2 cut(s) 206, 1388
Bst4CI ACNGT 5 cut(s) 72, 169, 776, 1146, 1314
BstACI GRCGYC 2 cut(s) 84, 412
BstDEI CTNAG 3 cut(s) 108, 948, 1170
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 1072
BstFNI CGCG 3 cut(s) 76, 243, 620
BstH2I RGCGCY 2 cut(s) 87, 415
BstHHI GCGC 6 cut(s) 86, 132, 165, 414, 512, 1107
BstKTI GATC 5 cut(s) 235, 324, 329, 398, 766
BstMAI GTCTC 4 cut(s) 13, 24, 636, 792
BstMBI GATC 5 cut(s) 232, 321, 326, 395, 763
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 2 cut(s) 206, 1388
BstNSI RCATGY 2 cut(s) 97, 1113
BstSCI CCNGG 2 cut(s) 204, 1386
BstSFI CTRYAG 2 cut(s) 654, 1194
BstSLI GKGCMC 1 cut(s) 1189
BstUI CGCG 3 cut(s) 76, 243, 620
BstV1I GCAGC 3 cut(s) 37, 249, 276
BstXI CCANNNNNNTGG 1 cut(s) 695
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 1072
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 4 cut(s) 303, 772, 1026, 1127
CciI TCATGA 1 cut(s) 991
CfoI GCGC 6 cut(s) 86, 132, 165, 414, 512, 1107
Cfr13I GGNCC 1 cut(s) 1048
Cfr42I CCGCGG 1 cut(s) 244
CseI GACGC 1 cut(s) 653
Csp6I GTAC 1 cut(s) 634
CviAII CATG 9 cut(s) 94, 121, 175, 524, 608, 992, 1082, 1110, 1228
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 3 cut(s) 108, 948, 1170
DinI GGCGCC 2 cut(s) 85, 413
DpnI GATC 5 cut(s) 234, 323, 328, 397, 765
DpnII GATC 5 cut(s) 232, 321, 326, 395, 763
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 3 cut(s) 43, 105, 250
Eco24I GRGCYC 3 cut(s) 45, 107, 252
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 1048
Eco53kI GAGCTC 3 cut(s) 43, 105, 250
Eco57I CTGAAG 2 cut(s) 480, 1151
EcoICRI GAGCTC 3 cut(s) 43, 105, 250
EcoO109I RGGNCCY 1 cut(s) 1048
EcoRI GAATTC 1 cut(s) 1365
EcoRII CCWGG 2 cut(s) 204, 1386
EcoRV GATATC 1 cut(s) 901
EcoT38I GRGCYC 3 cut(s) 45, 107, 252
EgeI GGCGCC 2 cut(s) 85, 413
EheI GGCGCC 2 cut(s) 85, 413
Esp3I CGTCTC 2 cut(s) 13, 636
FaeI CATG 9 cut(s) 97, 124, 178, 527, 611, 995, 1085, 1113, 1231
FaqI GGGAC 1 cut(s) 729
FatI CATG 9 cut(s) 93, 120, 174, 523, 607, 991, 1081, 1109, 1227
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 5 cut(s) 26, 77, 238, 241, 290
FokI GGATG 1 cut(s) 1079
FriOI GRGCYC 3 cut(s) 45, 107, 252
Fsp4HI GCNGC 5 cut(s) 26, 77, 238, 241, 290
FspBI CTAG 1 cut(s) 1091
GlaI GCGC 6 cut(s) 85, 131, 164, 413, 511, 1106
GluI GCNGC 5 cut(s) 26, 77, 238, 241, 290
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 2 cut(s) 227, 671
HaeII RGCGCY 2 cut(s) 87, 415
HgaI GACGC 1 cut(s) 653
HhaI GCGC 6 cut(s) 86, 132, 165, 414, 512, 1107
Hin1I GRCGYC 2 cut(s) 84, 412
Hin1II CATG 9 cut(s) 97, 124, 178, 527, 611, 995, 1085, 1113, 1231
Hin6I GCGC 6 cut(s) 84, 130, 163, 412, 510, 1105
HinP1I GCGC 6 cut(s) 84, 130, 163, 412, 510, 1105
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HphI GGTGA 2 cut(s) 200, 257
Hpy166II GTNNAC 5 cut(s) 172, 340, 677, 962, 1187
Hpy188I TCNGA 6 cut(s) 111, 156, 326, 419, 471, 1151
Hpy188III TCNNGA 9 cut(s) 603, 734, 791, 910, 992, 1029, 1237, 1274, 1292
Hpy8I GTNNAC 5 cut(s) 172, 340, 677, 962, 1187
Hpy99I CGWCG 3 cut(s) 173, 257, 1314
HpyAV CCTTC 4 cut(s) 106, 850, 983, 1250
HpyCH4III ACNGT 5 cut(s) 72, 169, 776, 1146, 1314
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 7 cut(s) 120, 377, 432, 1019, 1187, 1210, 1268
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 108, 948, 1170
HpySE526I ACGT 1 cut(s) 877
Hsp92I GRCGYC 2 cut(s) 84, 412
Hsp92II CATG 9 cut(s) 97, 124, 178, 527, 611, 995, 1085, 1113, 1231
HspAI GCGC 6 cut(s) 84, 130, 163, 412, 510, 1105
KasI GGCGCC 2 cut(s) 83, 411
Ksp22I TGATCA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 5 cut(s) 232, 321, 326, 395, 763
LmnI GCTCC 2 cut(s) 40, 48
Lsp1109I GCAGC 3 cut(s) 37, 249, 276
LweI GCATC 1 cut(s) 1197
MaeI CTAG 1 cut(s) 1091
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 3 cut(s) 358, 1215, 1296
MalI GATC 5 cut(s) 234, 323, 328, 397, 765
MboI GATC 5 cut(s) 232, 321, 326, 395, 763
MboII GAAGA 1 cut(s) 1362
MhlI GDGCHC 5 cut(s) 45, 107, 252, 273, 1189
MluI ACGCGT 1 cut(s) 618
Mly113I GGCGCC 2 cut(s) 84, 412
MlyI GAGTC 3 cut(s) 71, 957, 1304
MmeI TCCRAC 3 cut(s) 78, 442, 465
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 6 cut(s) 261, 578, 630, 786, 1376, 1432
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 206, 1388
MvaI CCWGG 2 cut(s) 206, 1388
MvnI CGCG 3 cut(s) 76, 243, 620
MwoI GCNNNNNNNGC 1 cut(s) 464
NarI GGCGCC 2 cut(s) 84, 412
NdeI CATATG 1 cut(s) 373
NdeII GATC 5 cut(s) 232, 321, 326, 395, 763
NlaIII CATG 9 cut(s) 97, 124, 178, 527, 611, 995, 1085, 1113, 1231
NlaIV GGNNCC 4 cut(s) 85, 280, 413, 922
NmuCI GTSAC 2 cut(s) 358, 1296
NspI RCATGY 2 cut(s) 97, 1113
PagI TCATGA 1 cut(s) 991
PciI ACATGT 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 7 cut(s) 405, 597, 737, 1011, 1240, 1321, 1391
PkrI GCNGC 5 cut(s) 27, 78, 239, 242, 291
PleI GAGTC 3 cut(s) 70, 957, 1303
PluTI GGCGCC 2 cut(s) 87, 415
PpsI GAGTC 3 cut(s) 70, 957, 1303
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 1 cut(s) 93
Psp124BI GAGCTC 3 cut(s) 45, 107, 252
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 2 cut(s) 204, 1386
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 204, 1386
PspN4I GGNNCC 4 cut(s) 85, 280, 413, 922
PspPI GGNCC 1 cut(s) 1048
PspPPI RGGWCCY 1 cut(s) 1048
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 3 cut(s) 45, 107, 252
SacII CCGCGG 1 cut(s) 244
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 6 cut(s) 261, 578, 630, 786, 1376, 1432
SatI GCNGC 5 cut(s) 26, 77, 238, 241, 290
Sau3AI GATC 5 cut(s) 232, 321, 326, 395, 763
Sau96I GGNCC 1 cut(s) 1048
SchI GAGTC 3 cut(s) 71, 957, 1304
ScrFI CCNGG 2 cut(s) 206, 1388
SduI GDGCHC 5 cut(s) 45, 107, 252, 273, 1189
SfaNI GCATC 1 cut(s) 1197
SfcI CTRYAG 2 cut(s) 654, 1194
SfoI GGCGCC 2 cut(s) 85, 413
Sfr303I CCGCGG 1 cut(s) 244
SgrBI CCGCGG 1 cut(s) 244
SinI GGWCC 1 cut(s) 1048
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 721, 1292
SmoI CTYRAG 2 cut(s) 721, 1292
SsiI CCGC 5 cut(s) 12, 38, 76, 241, 243
SspDI GGCGCC 2 cut(s) 83, 411
SspI AATATT 1 cut(s) 730
SspMI CTAG 1 cut(s) 1091
SstI GAGCTC 3 cut(s) 45, 107, 252
StyD4I CCNGG 2 cut(s) 204, 1386
TaaI ACNGT 5 cut(s) 72, 169, 776, 1146, 1314
TaiI ACGT 1 cut(s) 880
TatI WGTACW 1 cut(s) 633
TauI GCSGC 2 cut(s) 79, 243
TfiI GAWTC 7 cut(s) 405, 597, 737, 1011, 1240, 1321, 1391
Tru1I TTAA 6 cut(s) 261, 578, 630, 786, 1376, 1432
Tru9I TTAA 6 cut(s) 261, 578, 630, 786, 1376, 1432
TscAI CASTG 4 cut(s) 310, 779, 1026, 1134
TseFI GTSAC 2 cut(s) 358, 1296
TseI GCWGC 3 cut(s) 25, 237, 289
Tsp45I GTSAC 2 cut(s) 358, 1296
TspDTI ATGAA 6 cut(s) 137, 380, 540, 1008, 1098, 1269
TspGWI ACGGA 4 cut(s) 74, 468, 810, 1004
TspRI CASTG 4 cut(s) 310, 779, 1026, 1134
VneI GTGCAC 1 cut(s) 1185
VpaK11BI GGWCC 1 cut(s) 1048
XapI RAATTY 3 cut(s) 332, 810, 1365
XceI RCATGY 2 cut(s) 97, 1113
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.