Rorug05G0025900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000586
Physical Location & Seq
Forward (+)
1673832 .. 1675570
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0025900.1

Sequence Viewer

Length: 1170 bp
ATGGGTTGCAAGGTTTCAAAACATTCTTCGAACTTGTCGCTCAAGGGGACAACCGCTCTTGCTTTTTTCCACAAAGAGGGCATTGTAGTTGCAGTTGACTCCAGGGCTTCGAACGAAGTGGATGAGCTTGAAAAAGAGATTGAGATTGTAGACGACGAAGTCAAGATGTCTCGAATATCTCCTAAAATAATTTCCTTATTTGTGGGGCGACTTAGTGACTGTCGACTGTTGCGCATTCATATACAAAAGAAGTTTCCGTGCTGGGATGAATATGCTGGCAATGAACCTAGAGTTTCAGATGTAGCAGAAACAATTTATAAGTATCTAAATGGTCTTCGTGGCGAGAATAAAAGGTTTGGAATCCTCATCGCGGGATGGGATGCAGAGGGTCACGATCAAATTTATTGTCTGTTTATAAGAGATGATGTTGTTGTGAAACGAAAAGTAACTTCCCCATCATTCGGAGTACTAGGATCTGGGGGTGTATATGCTGCTACTAGTCTTAAAAGTGAGAACCGGTGTTCCAACTACGACATGTCCACCGACGATGGTACTAAGTTGGCCCTAGAAGCTTTATTTAATGCAACCGTCCATGATAGGTTCAGTGGTGGACTTTTGAGAGTTTATCACGTGGATAAATTTGGATGGCGCCCTGAAATTGTCCAAGATCCTTTAGAAGCCTACTCAATATATTACGAACATTATGAAGAAGAGAAAACGCTTTTCTTAGTTGTTTCTTCTCCTTCAAAAATCCCCCCTATCCCTGCCCAGAAGCTTATACGACACTTCAGGCAGAAAGGTATTACGGTAACAGCAGCCCATTGTGTAGCCCATCGTGTATTGGAGCAGCATTGTGTAGCCAATGGTGTATTGGAGAAGCAGCGGTTATCCTTCCACCGCCTTATATTCAACTATGGAGTTGAGGCTTCAAATGCATATGCACTCACAGCTGCTCATGGTGAAATTGATTCTCAACTTGTAGAAAAGTTTCCAAATCAAATATTGTTGAAAACTGCGTTTCAAAGAAAATTGTTGTTGAAAACTGTGGAGCCAAGTGTTGAACTCTATTTGAATCGGAGCTCAAAAGATTTGCTCGAGTTCATACGCACCCAATTTGATGGATATTTGTCAACAGAGATGACACAAATGACCGGAGCACTCGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

389

Amino Acids

43.86

Weight (kDa)

6.9

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 15 - 211 1e-17 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 416
AasI GACNNNNNNGTC 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 2 cut(s) 150, 223
AccII CGCG 1 cut(s) 371
AciI CCGC 4 cut(s) 54, 371, 883, 898
AclWI GGATC 2 cut(s) 481, 662
AcsI RAATTY 2 cut(s) 399, 638
AcuI CTGAAG 1 cut(s) 772
AcvI CACGTG 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 649
AfaI GTAC 2 cut(s) 468, 553
AfiI CCNNNNNNNGG 3 cut(s) 76, 370, 461
AflIII ACRYGT 1 cut(s) 534
AgeI ACCGGT 1 cut(s) 516
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 1 cut(s) 101
AloI GAACNNNNNNTCC 2 cut(s) 506, 538
AluBI AGCT 5 cut(s) 127, 572, 775, 950, 1080
AluI AGCT 5 cut(s) 127, 572, 775, 950, 1080
Alw21I GWGCWC 2 cut(s) 1082, 1159
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 481, 662
Ama87I CYCGRG 1 cut(s) 1094
AoxI GGCC 2 cut(s) 561, 1162
ApeKI GCWGC 5 cut(s) 491, 815, 847, 880, 950
ApoI RAATTY 2 cut(s) 399, 638
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 2 cut(s) 234, 651
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 971
AsuII TTCGAA 2 cut(s) 29, 110
AvaI CYCGRG 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 1 cut(s) 1082
BbrPI CACGTG 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 1082, 1159
BbvI GCAGC 5 cut(s) 478, 827, 859, 892, 937
BccI CCATC 6 cut(s) 369, 463, 542, 639, 840, 1112
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 4 cut(s) 288, 470, 498, 566
BfoI RGCGCY 1 cut(s) 652
BisI GCNGC 5 cut(s) 492, 816, 848, 881, 951
BlsI GCNGC 5 cut(s) 493, 817, 849, 882, 952
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 1094
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 650, 1050
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 85
Bpu14I TTCGAA 2 cut(s) 29, 110
BpuEI CTTGAG 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 649
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 516, 1151
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 370, 461
Bse118I RCCGGY 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 5 cut(s) 127, 271, 380, 385, 650
BseLI CCNNNNNNNGG 3 cut(s) 76, 370, 461
BseMI GCAATG 1 cut(s) 286
BseXI GCAGC 5 cut(s) 478, 827, 859, 892, 937
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 563, 1164
BshNI GGYRCC 1 cut(s) 648
BshTI ACCGGT 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 1082, 1159
BsiHKCI CYCGRG 1 cut(s) 1094
BsiSI CCGG 2 cut(s) 517, 1152
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 76, 370, 461
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 2 cut(s) 563, 1164
BsoBI CYCGRG 1 cut(s) 1094
Bsp119I TTCGAA 2 cut(s) 29, 110
Bsp1286I GDGCHC 2 cut(s) 1082, 1159
Bsp143I GATC 3 cut(s) 394, 473, 667
BspACI CCGC 4 cut(s) 54, 371, 883, 898
BspANI GGCC 2 cut(s) 563, 1164
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 650, 1050
BspPI GGATC 2 cut(s) 481, 662
BspT104I TTCGAA 2 cut(s) 29, 110
BspT107I GGYRCC 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 394, 473, 667
BssNI GRCGYC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 5 cut(s) 221, 228, 589, 808, 1045
Bst6I CTCTTC 1 cut(s) 705
BstACI GRCGYC 1 cut(s) 649
BstBAI YACGTR 1 cut(s) 631
BstBI TTCGAA 2 cut(s) 29, 110
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 212, 555, 727
BstF5I GGATG 5 cut(s) 127, 271, 380, 385, 650
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 2 cut(s) 234, 651
BstKTI GATC 3 cut(s) 397, 476, 670
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 394, 473, 667
BstMWI GCNNNNNNNGC 3 cut(s) 569, 932, 947
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 5 cut(s) 478, 827, 859, 892, 937
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 473, 667
BstXI CCANNNNNNTGG 1 cut(s) 1118
BstYI RGATCY 2 cut(s) 473, 667
BsuRI GGCC 2 cut(s) 563, 1164
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 5 cut(s) 127, 271, 380, 385, 650
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 234, 651
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 467, 552
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 3 cut(s) 535, 593, 956
CviQI GTAC 2 cut(s) 467, 552
DdeI CTNAG 3 cut(s) 212, 555, 727
DinI GGCGCC 1 cut(s) 650
DpnI GATC 3 cut(s) 396, 475, 669
DpnII GATC 3 cut(s) 394, 473, 667
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Ecl136II GAGCTC 1 cut(s) 1080
Eco24I GRGCYC 1 cut(s) 1082
Eco53kI GAGCTC 1 cut(s) 1080
Eco57I CTGAAG 1 cut(s) 772
Eco72I CACGTG 1 cut(s) 631
Eco88I CYCGRG 1 cut(s) 1094
EcoICRI GAGCTC 1 cut(s) 1080
EcoRII CCWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 1082
EgeI GGCGCC 1 cut(s) 650
EheI GGCGCC 1 cut(s) 650
FaeI CATG 3 cut(s) 538, 596, 959
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 534, 592, 955
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 937
FblI GTMKAC 2 cut(s) 150, 223
Fnu4HI GCNGC 5 cut(s) 492, 816, 848, 881, 951
FokI GGATG 5 cut(s) 134, 278, 387, 392, 657
FriOI GRGCYC 1 cut(s) 1082
Fsp4HI GCNGC 5 cut(s) 492, 816, 848, 881, 951
FspBI CTAG 4 cut(s) 288, 470, 498, 566
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 2 cut(s) 233, 650
GluI GCNGC 5 cut(s) 492, 816, 848, 881, 951
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 2 cut(s) 563, 1164
HapII CCGG 2 cut(s) 517, 1152
HhaI GCGC 2 cut(s) 234, 651
Hin1I GRCGYC 1 cut(s) 649
Hin1II CATG 3 cut(s) 538, 596, 959
Hin6I GCGC 2 cut(s) 232, 649
HinP1I GCGC 2 cut(s) 232, 649
HincII GTYRAC 3 cut(s) 97, 224, 1131
HindII GTYRAC 3 cut(s) 97, 224, 1131
HindIII AAGCTT 2 cut(s) 570, 773
HinfI GANTC 4 cut(s) 98, 360, 968, 1072
HpaII CCGG 2 cut(s) 517, 1152
HphI GGTGA 1 cut(s) 971
Hpy166II GTNNAC 6 cut(s) 97, 151, 224, 540, 611, 1131
Hpy188I TCNGA 3 cut(s) 298, 464, 1077
Hpy188III TCNNGA 3 cut(s) 163, 171, 392
Hpy8I GTNNAC 6 cut(s) 97, 151, 224, 540, 611, 1131
Hpy99I CGWCG 2 cut(s) 158, 548
HpyAV CCTTC 2 cut(s) 753, 901
HpyCH4III ACNGT 5 cut(s) 221, 228, 589, 808, 1045
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 6 cut(s) 9, 92, 383, 584, 935, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 569, 932, 947
HpyF3I CTNAG 3 cut(s) 212, 555, 727
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 649
Hsp92II CATG 3 cut(s) 538, 596, 959
HspAI GCGC 2 cut(s) 232, 649
KasI GGCGCC 1 cut(s) 648
Kzo9I GATC 3 cut(s) 394, 473, 667
LmnI GCTCC 4 cut(s) 844, 1048, 1077, 1154
Lsp1109I GCAGC 5 cut(s) 478, 827, 859, 892, 937
LweI GCATC 1 cut(s) 370
MaeI CTAG 4 cut(s) 288, 470, 498, 566
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 4 cut(s) 215, 389, 445, 808
MalI GATC 3 cut(s) 396, 475, 669
MbiI CCGCTC 1 cut(s) 56
MboI GATC 3 cut(s) 394, 473, 667
MboII GAAGA 5 cut(s) 18, 326, 719, 722, 729
MflI RGATCY 2 cut(s) 473, 667
MhlI GDGCHC 2 cut(s) 1082, 1159
MluCI AATT 8 cut(s) 189, 312, 399, 638, 657, 963, 1028, 1112
Mly113I GGCGCC 1 cut(s) 649
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 4 cut(s) 70, 374, 379, 916
Mph1103I ATGCAT 1 cut(s) 937
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 2 cut(s) 504, 579
MspA1I CMGCKG 2 cut(s) 883, 950
MspI CCGG 2 cut(s) 517, 1152
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 569, 932, 947
NarI GGCGCC 1 cut(s) 649
NdeI CATATG 1 cut(s) 937
NdeII GATC 3 cut(s) 394, 473, 667
NlaIII CATG 3 cut(s) 538, 596, 959
NlaIV GGNNCC 2 cut(s) 650, 1050
NmeAIII GCCGAG 1 cut(s) 1140
NmuCI GTSAC 2 cut(s) 215, 389
NsbI TGCGCA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 937
NspI RCATGY 1 cut(s) 538
NspV TTCGAA 2 cut(s) 29, 110
PaeR7I CTCGAG 1 cut(s) 1094
PciI ACATGT 1 cut(s) 534
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 3 cut(s) 360, 968, 1072
PflFI GACNNNGTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 5 cut(s) 493, 817, 849, 882, 952
PleI GAGTC 1 cut(s) 92
PluTI GGCGCC 1 cut(s) 652
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 631
PscI ACATGT 1 cut(s) 534
PsiI TTATAA 2 cut(s) 318, 416
Psp124BI GAGCTC 1 cut(s) 1082
Psp6I CCWGG 1 cut(s) 101
PspCI CACGTG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 650, 1050
PspPI GGNCC 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 1094
PsuI RGATCY 2 cut(s) 473, 667
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 2 cut(s) 468, 553
RsaNI GTAC 2 cut(s) 467, 552
SacI GAGCTC 1 cut(s) 1082
SalI GTCGAC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 504, 579
SatI GCNGC 5 cut(s) 492, 816, 848, 881, 951
Sau3AI GATC 3 cut(s) 394, 473, 667
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 1082, 1159
SfaNI GCATC 1 cut(s) 370
SfoI GGCGCC 1 cut(s) 650
Sfr274I CTCGAG 1 cut(s) 1094
SfuI TTCGAA 2 cut(s) 29, 110
SlaI CTCGAG 1 cut(s) 1094
SmlI CTYRAG 2 cut(s) 41, 1094
SmoI CTYRAG 2 cut(s) 41, 1094
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 8 cut(s) 189, 312, 399, 638, 657, 963, 1028, 1112
SsiI CCGC 4 cut(s) 54, 371, 883, 898
SspDI GGCGCC 1 cut(s) 648
SspI AATATT 1 cut(s) 1002
SspMI CTAG 4 cut(s) 288, 470, 498, 566
SstI GAGCTC 1 cut(s) 1082
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 5 cut(s) 221, 228, 589, 808, 1045
TaiI ACGT 1 cut(s) 633
TaqI TCGA 5 cut(s) 29, 110, 172, 223, 1095
TasI AATT 8 cut(s) 189, 312, 399, 638, 657, 963, 1028, 1112
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 3 cut(s) 360, 968, 1072
Tru1I TTAA 2 cut(s) 504, 579
Tru9I TTAA 2 cut(s) 504, 579
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 2 cut(s) 215, 389
TseI GCWGC 5 cut(s) 491, 815, 847, 880, 950
Tsp45I GTSAC 2 cut(s) 215, 389
TspDTI ATGAA 5 cut(s) 227, 282, 297, 720, 1090
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 610
Tth111I GACNNNGTC 1 cut(s) 158
XapI RAATTY 2 cut(s) 399, 638
XceI RCATGY 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XhoI CTCGAG 1 cut(s) 1094
XmiI GTMKAC 2 cut(s) 150, 223
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 4 cut(s) 288, 470, 498, 566
ZrmI AGTACT 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.