Rh5DG117200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000586
Physical Location & Seq
Forward (+)
10584938 .. 10589696
4759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117200.1

Sequence Viewer

Length: 1329 bp
ATGGCTTCGGAACTGCAGTTGTTGGAGGAACTTGACATTTCATTGTGCTCTGGTATCTCACATGAAGCTGTAAAAATGGTTGGGCGCTCTTGCCCTCTTTTGAAGTCATTCAAATTCAACAAGGAGTGGTGCAGATTCTCTGATGATGAGTCTGACTCTGACTCTGATGAGTATGGGTCTGACTTTGATGATAGTGATGACGATTATGCACATGCTCCTTTTGCTCATGCTCCTGTTGTTCATGCTCTTGTTGGTCATGCTCGTGTTAGAAAAGATGACAATGCAGATGCACTTGCTATAGCAGGAACAATGCAAGATTTACACCACCTCCAGCTTTATGGGAATAAGCTTACAAATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTAGAAACAAGATGTGCTGAACGGATTAAAAGGTTGTGGCTTCCCCATGATTCCATAGAGGGAAAAGAATTTACAGCTAGATCAGATGGGTACTGCTTCAAATGGATTGAACTCCCGGACAATGTTACTATGTCGATACTGTCACGGCTTGGACCAATTGATGTCCTGGAGAGTGCTCAGAAGGCGCATCATGTTCCCGACATTACCTTCGACTTAGATAAGATGTGCCGCCATGTTGTTGATCTTAGTTGTGGTAATTTGGTCAATGTGAATGTTGAGGACTTTATCTCGGATGAGCTCCTAGAGTATATCACTGATAGTTCGAGTCGAATCAGACGCCTGCGACTTGTGTGTTCTTATTACATATCAGATGAGGGATTAATTGAAGTTGCATCAAAACTTCCGCTGTTAGAGGACCTTGACATCTCATTATGCGGAAATTTGTCTCATAAGCCTGTGAAAGTGCTTGGGCACTCTTGCCCTCTTTTGAAATCATTCAAATTGAATAAACAATGGCACAAATATTCAGACAACTTCTTTGAAGAGATTATTGACGATGAAGGTCCTTGGAGTAAAGATGACGATGCTCTTGCTATTGCAGGAACGATGCATGGTTTATACCACCTGCAGCTTTTCGGGAATCAGCTGACCAATGATGGCTTAAGGGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTAGATCTTCGCTATTGTTTCAACCTTAATCTGGAGGGAGATTTGGGAAGAAGATGCACTGAACAAATTAAAAGATTGTTACTTCCCAAAGATTCAATTGCTGGATATGGATTTCTGCCTTCTACTGATTGGCAATCTCCCAGATCACCTAAATACATTATTGATGGGCTTTTCTCCTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

442

Amino Acids

50.04

Weight (kDa)

4.95

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1077
Acc36I ACCTGC 1 cut(s) 1077
AciI CCGC 3 cut(s) 673, 848, 879
AcsI RAATTY 4 cut(s) 113, 372, 512, 883
AcyI GRCGYC 1 cut(s) 781
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 1174
AflII CTTAAG 1 cut(s) 1105
AjnI CCWGG 2 cut(s) 609, 1319
AluBI AGCT 7 cut(s) 68, 334, 349, 521, 742, 1075, 1090
AluI AGCT 7 cut(s) 68, 334, 349, 521, 742, 1075, 1090
Alw21I GWGCWC 3 cut(s) 50, 622, 744
Alw26I GTCTC 1 cut(s) 894
ApeKI GCWGC 1 cut(s) 1072
ApoI RAATTY 4 cut(s) 113, 372, 512, 883
ArsI GACNNNNNNTTYG 4 cut(s) 635, 667, 965, 997
AseI ATTAAT 1 cut(s) 824
Asp700I GAANNNNTTC 2 cut(s) 107, 938
AspLEI GCGC 3 cut(s) 87, 414, 631
AspS9I GGNCC 3 cut(s) 596, 859, 1007
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 1281
AvaII GGWCC 3 cut(s) 596, 859, 1007
BaeGI GKGCMC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 744
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 50, 622, 744
BbvI GCAGC 1 cut(s) 1084
BccI CCATC 5 cut(s) 353, 524, 1094, 1115, 1301
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 2 cut(s) 611, 1321
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 894
BfaI CTAG 3 cut(s) 522, 746, 1145
BfmI CTRYAG 3 cut(s) 14, 297, 1070
BfoI RGCGCY 1 cut(s) 88
BfrI CTTAAG 1 cut(s) 1105
BfuAI ACCTGC 1 cut(s) 1077
BglII AGATCT 1 cut(s) 1147
BisI GCNGC 2 cut(s) 673, 1073
BlsI GCNGC 2 cut(s) 674, 1074
Bme1390I CCNGG 3 cut(s) 560, 611, 1321
Bme18I GGWCC 3 cut(s) 596, 859, 1007
BmgT120I GGNCC 3 cut(s) 596, 859, 1007
BmrFI CCNGG 3 cut(s) 560, 611, 1321
BmsI GCATC 6 cut(s) 277, 640, 845, 1018, 1041, 1187
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 3 cut(s) 314, 632, 1196
BpuEI CTTGAG 3 cut(s) 385, 416, 1157
BpuMI CCSGG 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 781
BsaJI CCNNGG 1 cut(s) 1010
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 1174
BseBI CCWGG 2 cut(s) 611, 1321
BseDI CCNNGG 1 cut(s) 1010
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 1 cut(s) 1174
BseMII CTCAG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 918
BseXI GCAGC 1 cut(s) 1084
BsgI GTGCAG 1 cut(s) 151
BsiHKAI GWGCWC 3 cut(s) 50, 622, 744
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 1174
BsmAI GTCTC 1 cut(s) 894
Bsp1286I GDGCHC 4 cut(s) 50, 622, 744, 918
Bsp143I GATC 5 cut(s) 406, 524, 685, 1147, 1286
BspACI CCGC 3 cut(s) 673, 848, 879
BspCNI CTCAG 1 cut(s) 634
BspMAI CTGCAG 2 cut(s) 18, 1074
BspMI ACCTGC 1 cut(s) 1077
BspTI CTTAAG 1 cut(s) 1105
BssECI CCNNGG 1 cut(s) 1010
BssMI GATC 5 cut(s) 406, 524, 685, 1147, 1286
BssNI GRCGYC 1 cut(s) 781
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 1010
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 611, 1321
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 981
BstACI GRCGYC 1 cut(s) 781
BstAFI CTTAAG 1 cut(s) 1105
BstC8I GCNNGC 1 cut(s) 785
BstDEI CTNAG 3 cut(s) 621, 658, 689
BstF5I GGATG 1 cut(s) 742
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 414, 631
BstKTI GATC 5 cut(s) 409, 527, 688, 1150, 1289
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 5 cut(s) 406, 524, 685, 1147, 1286
BstMWI GCNNNNNNNGC 2 cut(s) 221, 626
BstNI CCWGG 2 cut(s) 611, 1321
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 558, 609, 1319
BstSFI CTRYAG 3 cut(s) 14, 297, 1070
BstSLI GKGCMC 1 cut(s) 918
BstV1I GCAGC 1 cut(s) 1084
BstX2I RGATCY 1 cut(s) 1147
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 1147
BtsCI GGATG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 756, 1200
BveI ACCTGC 1 cut(s) 1077
Cac8I GCNNGC 1 cut(s) 785
CfoI GCGC 3 cut(s) 87, 414, 631
Cfr13I GGNCC 3 cut(s) 596, 859, 1007
CseI GACGC 1 cut(s) 789
Csp6I GTAC 1 cut(s) 535
CviAII CATG 9 cut(s) 62, 212, 227, 242, 257, 491, 635, 677, 1055
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 621, 658, 689
DpnI GATC 5 cut(s) 408, 526, 687, 1149, 1288
DpnII GATC 5 cut(s) 406, 524, 685, 1147, 1286
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 1010
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 3 cut(s) 596, 859, 1007
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 2 cut(s) 859, 1007
EcoRII CCWGG 2 cut(s) 609, 1319
EcoT14I CCWWGG 1 cut(s) 1010
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 1010
FaeI CATG 9 cut(s) 65, 215, 230, 245, 260, 494, 638, 680, 1058
FatI CATG 9 cut(s) 61, 211, 226, 241, 256, 490, 634, 676, 1054
Fnu4HI GCNGC 2 cut(s) 673, 1073
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 2 cut(s) 673, 1073
FspBI CTAG 3 cut(s) 522, 746, 1145
GlaI GCGC 3 cut(s) 86, 413, 630
GluI GCNGC 2 cut(s) 673, 1073
GsuI CTGGAG 3 cut(s) 314, 632, 1196
HaeII RGCGCY 1 cut(s) 88
HapII CCGG 1 cut(s) 560
HgaI GACGC 1 cut(s) 789
HhaI GCGC 3 cut(s) 87, 414, 631
Hin1I GRCGYC 1 cut(s) 781
Hin1II CATG 9 cut(s) 65, 215, 230, 245, 260, 494, 638, 680, 1058
Hin6I GCGC 3 cut(s) 85, 412, 629
HinP1I GCGC 3 cut(s) 85, 412, 629
HindIII AAGCTT 1 cut(s) 347
HpaII CCGG 1 cut(s) 560
HphI GGTGA 1 cut(s) 1281
Hpy188III TCNNGA 7 cut(s) 377, 395, 641, 1081, 1118, 1136, 1175
HpyAV CCTTC 4 cut(s) 619, 661, 998, 1272
HpyCH4III ACNGT 1 cut(s) 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 626
HpyF3I CTNAG 3 cut(s) 621, 658, 689
Hsp92I GRCGYC 1 cut(s) 781
Hsp92II CATG 9 cut(s) 65, 215, 230, 245, 260, 494, 638, 680, 1058
HspAI GCGC 3 cut(s) 85, 412, 629
Kzo9I GATC 5 cut(s) 406, 524, 685, 1147, 1286
LmnI GCTCC 3 cut(s) 220, 235, 747
Lsp1109I GCAGC 1 cut(s) 1084
LweI GCATC 6 cut(s) 277, 640, 845, 1018, 1041, 1187
MaeI CTAG 3 cut(s) 522, 746, 1145
MaeIII GTNAC 5 cut(s) 399, 568, 585, 1140, 1221
MalI GATC 5 cut(s) 408, 526, 687, 1149, 1288
MboI GATC 5 cut(s) 406, 524, 685, 1147, 1286
MboII GAAGA 4 cut(s) 998, 1142, 1203, 1206
MfeI CAATTG 2 cut(s) 600, 1239
MflI RGATCY 1 cut(s) 1147
MhlI GDGCHC 4 cut(s) 50, 622, 744, 918
MlyI GAGTC 6 cut(s) 149, 155, 158, 407, 778, 1148
Mph1103I ATGCAT 1 cut(s) 1056
MroXI GAANNNNTTC 2 cut(s) 107, 938
MseI TTAA 5 cut(s) 471, 824, 1106, 1170, 1212
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 850, 1090
MspCI CTTAAG 1 cut(s) 1105
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 3 cut(s) 560, 611, 1321
MunI CAATTG 2 cut(s) 600, 1239
MvaI CCWGG 2 cut(s) 611, 1321
MwoI GCNNNNNNNGC 2 cut(s) 221, 626
NciI CCSGG 1 cut(s) 560
NdeII GATC 5 cut(s) 406, 524, 685, 1147, 1286
NlaIII CATG 9 cut(s) 65, 215, 230, 245, 260, 494, 638, 680, 1058
NmuCI GTSAC 3 cut(s) 399, 585, 1140
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 1077
PdmI GAANNNNTTC 2 cut(s) 107, 938
PfeI GAWTC 5 cut(s) 135, 494, 774, 1084, 1235
PfoI TCCNGGA 2 cut(s) 558, 609
PkrI GCNGC 2 cut(s) 674, 1074
PleI GAGTC 6 cut(s) 149, 155, 157, 406, 777, 1147
PpsI GAGTC 6 cut(s) 149, 155, 157, 406, 777, 1147
PpuMI RGGWCCY 2 cut(s) 859, 1007
PshBI ATTAAT 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 2 cut(s) 859, 1007
Psp6I CCWGG 2 cut(s) 609, 1319
PspGI CCWGG 2 cut(s) 609, 1319
PspPI GGNCC 3 cut(s) 596, 859, 1007
PspPPI RGGWCCY 2 cut(s) 859, 1007
PstI CTGCAG 2 cut(s) 18, 1074
PsuI RGATCY 1 cut(s) 1147
PvuII CAGCTG 1 cut(s) 1090
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 471, 824, 1106, 1170, 1212
SatI GCNGC 2 cut(s) 673, 1073
Sau3AI GATC 5 cut(s) 406, 524, 685, 1147, 1286
Sau96I GGNCC 3 cut(s) 596, 859, 1007
SchI GAGTC 6 cut(s) 149, 155, 158, 407, 778, 1148
ScrFI CCNGG 3 cut(s) 560, 611, 1321
SduI GDGCHC 4 cut(s) 50, 622, 744, 918
SfaNI GCATC 6 cut(s) 277, 640, 845, 1018, 1041, 1187
SfcI CTRYAG 3 cut(s) 14, 297, 1070
SinI GGWCC 3 cut(s) 596, 859, 1007
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 364, 395, 1105, 1136
SmoI CTYRAG 4 cut(s) 364, 395, 1105, 1136
SsiI CCGC 3 cut(s) 673, 848, 879
SspI AATATT 1 cut(s) 968
SspMI CTAG 3 cut(s) 522, 746, 1145
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 558, 609, 1319
StyI CCWWGG 1 cut(s) 1010
TaaI ACNGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 578, 654, 767, 772
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 5 cut(s) 135, 494, 774, 1084, 1235
Tru1I TTAA 5 cut(s) 471, 824, 1106, 1170, 1212
Tru9I TTAA 5 cut(s) 471, 824, 1106, 1170, 1212
TscAI CASTG 2 cut(s) 763, 1207
TseFI GTSAC 3 cut(s) 399, 585, 1140
TseI GCWGC 1 cut(s) 1072
Tsp45I GTSAC 3 cut(s) 399, 585, 1140
TspDTI ATGAA 4 cut(s) 30, 78, 230, 1017
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 763, 1207
Vha464I CTTAAG 1 cut(s) 1105
VpaK11BI GGWCC 3 cut(s) 596, 859, 1007
VspI ATTAAT 1 cut(s) 824
XapI RAATTY 4 cut(s) 113, 372, 512, 883
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 107, 938
XspI CTAG 3 cut(s) 522, 746, 1145
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.