Rh6DG501400

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008302
Physical Location & Seq
Forward (+)
65720089 .. 65721148
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG501400.1

Sequence Viewer

Length: 936 bp
ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTTCTCTTCCTCCTCCTCCAGCTCATGATTGGCACCATCTTCATGGCTTCCAGCTTAGGCACCCAGAAGCACCACGACCAAGACAACCACGACCAGCAACAGCAACAGCAACAGCAACAGCAACAACAAGGCTTGGCGAGATCTCCCTCTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGGCTACAGATCTCCGGAACCGGCCACGAATTATGAAAAACCACCTGAATCCGAGACCCATTTCGCTTTCCCGCACGCCCAGGAGGTGGAACAGCCCAAACTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTCCCAGTTCCACTTCCCGAAAGAGTCCAGCCCGTTACAGCCCCGAGATTTCGCAGTCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGACGAAGACGAAGACGAGGCCGAAGAGGCTGCTGAAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGGTGAGGAGAAAGAGCAGACCCTGGACGAGATTTACAGCCAGCTAGATCTGCAGGACCACCACGTCAGCAGGACGACATCGGACACCCAGCCGGCTTCCGGCGACGTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCGCCAGGTCGGCATTTGCTCATTTCGAGGCGGCCGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCAGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCATTAGGTACAAGGACATGATCAACAGAGGAAGCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

311

Amino Acids

35.73

Weight (kDa)

4.87

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 7.3e-12 Domain of unknown function (DUF4408)
DUF761 PF05553 273 - 307 3.1e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccB1I GGYRCC 2 cut(s) 101, 128
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 379
AccII CGCG 2 cut(s) 683, 818
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 8 cut(s) 229, 323, 379, 681, 746, 766, 806, 818
AcoI YGGCCR 4 cut(s) 273, 711, 747, 770
AcuI CTGAAG 2 cut(s) 552, 890
AfaI GTAC 3 cut(s) 472, 678, 902
AfiI CCNNNNNNNGG 5 cut(s) 36, 337, 668, 720, 772
AgsI TTSAA 3 cut(s) 235, 394, 859
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 3 cut(s) 330, 591, 719
AluBI AGCT 7 cut(s) 54, 91, 123, 613, 688, 868, 874
AluI AGCT 7 cut(s) 54, 91, 123, 613, 688, 868, 874
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 3 cut(s) 592, 868, 883
Ama87I CYCGRG 1 cut(s) 438
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 6 cut(s) 39, 273, 516, 711, 747, 770
ApeKI GCWGC 7 cut(s) 226, 527, 688, 803, 862, 865, 874
AspLEI GCGC 1 cut(s) 719
AspS9I GGNCC 3 cut(s) 39, 547, 625
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 2 cut(s) 555, 830
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 2 cut(s) 547, 625
BanI GGYRCC 2 cut(s) 101, 128
BbsI GAAGAC 4 cut(s) 498, 504, 510, 516
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 7 cut(s) 238, 514, 675, 815, 861, 874, 877
BccI CCATC 2 cut(s) 113, 248
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 3 cut(s) 332, 593, 721
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 912
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 3 cut(s) 256, 620, 875
BfoI RGCGCY 1 cut(s) 720
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 2 cut(s) 524, 725
BglII AGATCT 4 cut(s) 209, 260, 359, 616
BmcAI AGTACT 1 cut(s) 472
Bme1390I CCNGG 4 cut(s) 332, 455, 593, 721
Bme18I GGWCC 2 cut(s) 547, 625
BmeT110I CYCGRG 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 39, 547, 625
BmiI GGNNCC 5 cut(s) 103, 130, 270, 383, 459
BmrFI CCNGG 4 cut(s) 332, 455, 593, 721
BmrI ACTGGG 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 4 cut(s) 498, 504, 510, 516
BpmI CTGGAG 3 cut(s) 71, 368, 395
Bpu10I CCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 2 cut(s) 555, 830
BpuMI CCSGG 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 330, 591
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 337, 668, 720, 772
Bse118I RCCGGY 4 cut(s) 271, 661, 768, 772
Bse1I ACTGG 2 cut(s) 385, 400
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 3 cut(s) 332, 593, 721
BseDI CCNNGG 2 cut(s) 330, 591
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 5 cut(s) 36, 337, 668, 720, 772
BseNI ACTGG 2 cut(s) 385, 400
BseRI GAGGAG 3 cut(s) 71, 74, 590
BseX3I CGGCCG 2 cut(s) 747, 770
BseXI GCAGC 7 cut(s) 238, 514, 675, 815, 861, 874, 877
BseYI CCCAGC 1 cut(s) 657
Bsh1236I CGCG 2 cut(s) 683, 818
Bsh1285I CGRYCG 3 cut(s) 750, 773, 780
BshFI GGCC 6 cut(s) 41, 275, 518, 713, 749, 772
BshNI GGYRCC 2 cut(s) 101, 128
BsiEI CGRYCG 3 cut(s) 750, 773, 780
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 7 cut(s) 266, 272, 455, 662, 669, 769, 773
BslFI GGGAC 2 cut(s) 382, 437
BslI CCNNNNNNNGG 5 cut(s) 36, 337, 668, 720, 772
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 382, 437
BsnI GGCC 6 cut(s) 41, 275, 518, 713, 749, 772
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 438
Bsp119I TTCGAA 2 cut(s) 555, 830
Bsp1286I GDGCHC 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 6 cut(s) 209, 260, 359, 616, 891, 912
BspACI CCGC 8 cut(s) 229, 323, 379, 681, 746, 766, 806, 818
BspANI GGCC 6 cut(s) 41, 275, 518, 713, 749, 772
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 2 cut(s) 683, 818
BspHI TCATGA 2 cut(s) 93, 487
BspLI GGNNCC 5 cut(s) 103, 130, 270, 383, 459
BspMAI CTGCAG 2 cut(s) 624, 879
BspT104I TTCGAA 2 cut(s) 555, 830
BspT107I GGYRCC 2 cut(s) 101, 128
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 4 cut(s) 271, 661, 768, 772
BsrI ACTGG 2 cut(s) 385, 400
BssAI RCCGGY 4 cut(s) 271, 661, 768, 772
BssECI CCNNGG 2 cut(s) 330, 591
BssMI GATC 6 cut(s) 209, 260, 359, 616, 891, 912
Bst2UI CCWGG 3 cut(s) 332, 593, 721
Bst4CI ACNGT 2 cut(s) 70, 781
Bst6I CTCTTC 3 cut(s) 80, 516, 528
BstBI TTCGAA 2 cut(s) 555, 830
BstC8I GCNNGC 6 cut(s) 327, 611, 663, 715, 770, 774
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 2 cut(s) 683, 818
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 6 cut(s) 212, 263, 362, 619, 894, 915
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 6 cut(s) 209, 260, 359, 616, 891, 912
BstMCI CGRYCG 3 cut(s) 750, 773, 780
BstMWI GCNNNNNNNGC 8 cut(s) 379, 524, 619, 725, 803, 871, 874, 880
BstNI CCWGG 3 cut(s) 332, 593, 721
BstSCI CCNGG 4 cut(s) 330, 453, 591, 719
BstSFI CTRYAG 3 cut(s) 256, 620, 875
BstUI CGCG 2 cut(s) 683, 818
BstV1I GCAGC 7 cut(s) 238, 514, 675, 815, 861, 874, 877
BstV2I GAAGAC 4 cut(s) 498, 504, 510, 516
BstX2I RGATCY 4 cut(s) 209, 260, 359, 616
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 4 cut(s) 209, 260, 359, 616
BstZI CGGCCG 2 cut(s) 747, 770
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 6 cut(s) 41, 275, 518, 713, 749, 772
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 1 cut(s) 547
Cac8I GCNNGC 6 cut(s) 327, 611, 663, 715, 770, 774
CaiI CAGNNNCTG 3 cut(s) 592, 868, 883
CciI TCATGA 2 cut(s) 93, 487
CfoI GCGC 1 cut(s) 719
Cfr10I RCCGGY 4 cut(s) 271, 661, 768, 772
Cfr13I GGNCC 3 cut(s) 39, 547, 625
CseI GACGC 1 cut(s) 824
Csp6I GTAC 3 cut(s) 471, 677, 901
CviAII CATG 6 cut(s) 46, 94, 112, 370, 488, 910
CviQI GTAC 3 cut(s) 471, 677, 901
DdeI CTNAG 1 cut(s) 124
DpnI GATC 6 cut(s) 211, 262, 361, 618, 893, 914
DpnII GATC 6 cut(s) 209, 260, 359, 616, 891, 912
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 4 cut(s) 273, 711, 747, 770
EagI CGGCCG 2 cut(s) 747, 770
Eam1104I CTCTTC 3 cut(s) 80, 516, 528
EarI CTCTTC 3 cut(s) 80, 516, 528
EclXI CGGCCG 2 cut(s) 747, 770
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 547, 625
Eco52I CGGCCG 2 cut(s) 747, 770
Eco57I CTGAAG 2 cut(s) 552, 890
Eco88I CYCGRG 1 cut(s) 438
EcoRII CCWGG 3 cut(s) 330, 591, 719
FaeI CATG 6 cut(s) 49, 97, 115, 373, 491, 913
FaiI YATR 7 cut(s) 47, 95, 113, 285, 371, 489, 911
FaqI GGGAC 2 cut(s) 382, 437
FatI CATG 6 cut(s) 45, 93, 111, 369, 487, 909
FauI CCCGC 2 cut(s) 330, 688
FbaI TGATCA 1 cut(s) 912
FokI GGATG 1 cut(s) 554
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 718
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 3 cut(s) 71, 368, 395
HaeII RGCGCY 1 cut(s) 720
HaeIII GGCC 6 cut(s) 41, 275, 518, 713, 749, 772
HapII CCGG 7 cut(s) 266, 272, 455, 662, 669, 769, 773
HgaI GACGC 1 cut(s) 824
HhaI GCGC 1 cut(s) 719
Hin1II CATG 6 cut(s) 49, 97, 115, 373, 491, 913
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 5 cut(s) 11, 299, 419, 827, 887
HpaI GTTAAC 1 cut(s) 60
HpaII CCGG 7 cut(s) 266, 272, 455, 662, 669, 769, 773
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 304, 652
Hpy188III TCNNGA 4 cut(s) 94, 266, 412, 488
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 2 cut(s) 677, 818
HpyAV CCTTC 5 cut(s) 375, 400, 563, 778, 787
HpyCH4III ACNGT 2 cut(s) 70, 781
HpyCH4IV ACGT 2 cut(s) 633, 675
HpyCH4V TGCA 3 cut(s) 226, 622, 877
HpyF10VI GCNNNNNNNGC 8 cut(s) 379, 524, 619, 725, 803, 871, 874, 880
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 633, 675
Hsp92II CATG 6 cut(s) 49, 97, 115, 373, 491, 913
HspAI GCGC 1 cut(s) 717
Kpn2I TCCGGA 1 cut(s) 265
KroI GCCGGC 3 cut(s) 661, 768, 772
KroNI GCCGGC 3 cut(s) 663, 770, 774
Ksp22I TGATCA 1 cut(s) 912
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 6 cut(s) 209, 260, 359, 616, 891, 912
LmnI GCTCC 2 cut(s) 376, 387
Lsp1109I GCAGC 7 cut(s) 238, 514, 675, 815, 861, 874, 877
MaeI CTAG 1 cut(s) 614
MaeII ACGT 2 cut(s) 633, 675
MaeIII GTNAC 1 cut(s) 429
MalI GATC 6 cut(s) 211, 262, 361, 618, 893, 914
MbiI CCGCTC 1 cut(s) 379
MboI GATC 6 cut(s) 209, 260, 359, 616, 891, 912
MflI RGATCY 4 cut(s) 209, 260, 359, 616
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 3 cut(s) 33, 280, 551
MlyI GAGTC 2 cut(s) 428, 881
MmeI TCCRAC 1 cut(s) 519
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 3 cut(s) 661, 768, 772
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 2 cut(s) 110, 486
MspA1I CMGCKG 4 cut(s) 54, 229, 806, 868
MspI CCGG 7 cut(s) 266, 272, 455, 662, 669, 769, 773
MspR9I CCNGG 4 cut(s) 332, 455, 593, 721
MvaI CCWGG 3 cut(s) 332, 593, 721
MvnI CGCG 2 cut(s) 683, 818
MwoI GCNNNNNNNGC 8 cut(s) 379, 524, 619, 725, 803, 871, 874, 880
NaeI GCCGGC 3 cut(s) 663, 770, 774
NciI CCSGG 1 cut(s) 455
NdeII GATC 6 cut(s) 209, 260, 359, 616, 891, 912
NgoMIV GCCGGC 3 cut(s) 661, 768, 772
NlaIII CATG 6 cut(s) 49, 97, 115, 373, 491, 913
NlaIV GGNNCC 5 cut(s) 103, 130, 270, 383, 459
NspV TTCGAA 2 cut(s) 555, 830
PagI TCATGA 2 cut(s) 93, 487
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PdiI GCCGGC 3 cut(s) 663, 770, 774
PfeI GAWTC 3 cut(s) 11, 299, 827
PflMI CCANNNNNTGG 1 cut(s) 337
PfoI TCCNGGA 1 cut(s) 453
PleI GAGTC 2 cut(s) 427, 881
PpsI GAGTC 2 cut(s) 427, 881
Psp6I CCWGG 3 cut(s) 330, 591, 719
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 3 cut(s) 330, 591, 719
PspN4I GGNNCC 5 cut(s) 103, 130, 270, 383, 459
PspPI GGNCC 3 cut(s) 39, 547, 625
PstI CTGCAG 2 cut(s) 624, 879
PstNI CAGNNNCTG 3 cut(s) 592, 868, 883
PsuI RGATCY 4 cut(s) 209, 260, 359, 616
PvuII CAGCTG 2 cut(s) 54, 868
RsaI GTAC 3 cut(s) 472, 678, 902
RsaNI GTAC 3 cut(s) 471, 677, 901
RseI CAYNNNNRTG 2 cut(s) 110, 486
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 6 cut(s) 209, 260, 359, 616, 891, 912
Sau96I GGNCC 3 cut(s) 39, 547, 625
ScaI AGTACT 1 cut(s) 472
SchI GAGTC 2 cut(s) 428, 881
ScrFI CCNGG 4 cut(s) 332, 455, 593, 721
SduI GDGCHC 1 cut(s) 483
SfcI CTRYAG 3 cut(s) 256, 620, 875
SfuI TTCGAA 2 cut(s) 555, 830
SinI GGWCC 2 cut(s) 547, 625
SmiMI CAYNNNNRTG 2 cut(s) 110, 486
Sse9I AATT 3 cut(s) 33, 280, 551
SsiI CCGC 8 cut(s) 229, 323, 379, 681, 746, 766, 806, 818
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 4 cut(s) 330, 453, 591, 719
TaaI ACNGT 2 cut(s) 70, 781
TaiI ACGT 2 cut(s) 636, 678
TaqI TCGA 4 cut(s) 555, 741, 830, 890
TasI AATT 3 cut(s) 33, 280, 551
TatI WGTACW 1 cut(s) 470
TauI GCSGC 3 cut(s) 382, 749, 768
TfiI GAWTC 3 cut(s) 11, 299, 827
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 7 cut(s) 226, 527, 688, 803, 862, 865, 874
TspDTI ATGAA 6 cut(s) 62, 100, 300, 504, 716, 835
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 547, 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 614
ZrmI AGTACT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.