Rw6G043400

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008302
Physical Location & Seq
Forward (+)
66740627 .. 66742655
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043400.1

Sequence Viewer

Length: 927 bp
ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTTCTCTTCCTCCTCCTCCAGCTCATGATTGGCATCATCTTCGTTGCTTCCAGCTTAGGCACCCAGAAGCACCACGACCAAGACAACCACCACCACCAACAGGGCTTGGCGAGATCTCCGTCTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGCCTACAGATCTCCGGAACCGGCCACGAATTATGAAAAGCCACCCGAATCCGAGACCCATTTCGCTTATTTCCCGCACGCCCAGGAGGTCGAACAGCCCAAACTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCAAGTTCCAGTTGCACTTCCCGAAAGGGTCCAGCCCGCTACAGCCCCGAGATTTCGCAGCCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGACGAAGACGACGAAGAGTCGGAAGAGGAGGCCAAAGAGGCTGAAGAGTTGGATGAGGACCGATTCGAAGCCGAAGAAGGAGAAGAAGAAGGTGAAGAGAAAGAACAGACCATGGACGAGGTTTACAGCCAGCTACATCTGCAGGACCACCACGTCAGCAGGACGAAATCGGACACCAAGCCGGCTTCCGGCGACTTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCACCAAGTCGGCATTTGCTCATTTCGAGGCGGACGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCGGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCGTTAGGTACAAGGACATGGTCAACAGAGGAAGCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

308

Amino Acids

35.37

Weight (kDa)

5.1

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 5.6e-11 Domain of unknown function (DUF4408)
DUF761 PF05553 270 - 304 2.9e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 2 cut(s) 674, 809
AccIII TCCGGA 1 cut(s) 238
AcoI YGGCCR 3 cut(s) 246, 702, 761
AcuI CTGAAG 2 cut(s) 534, 881
AfaI GTAC 2 cut(s) 445, 893
AfiI CCNNNNNNNGG 4 cut(s) 36, 169, 659, 763
AgsI TTSAA 2 cut(s) 208, 850
AhdI GACNNNNNGTC 1 cut(s) 487
AjiI CACGTC 1 cut(s) 625
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 7 cut(s) 54, 91, 123, 604, 679, 859, 865
AluI AGCT 7 cut(s) 54, 91, 123, 604, 679, 859, 865
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 272
AlwNI CAGNNNCTG 2 cut(s) 859, 874
Ama87I CYCGRG 1 cut(s) 411
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 5 cut(s) 39, 246, 501, 702, 761
ApeKI GCWGC 6 cut(s) 199, 422, 679, 853, 856, 865
AspS9I GGNCC 4 cut(s) 39, 393, 529, 616
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 575
AsuII TTCGAA 2 cut(s) 537, 821
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 3 cut(s) 393, 529, 616
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 3 cut(s) 471, 477, 483
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 6 cut(s) 211, 434, 666, 852, 865, 868
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 272
BfmI CTRYAG 4 cut(s) 229, 404, 611, 866
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 509
BglII AGATCT 3 cut(s) 182, 233, 335
BisI GCNGC 9 cut(s) 200, 356, 423, 680, 757, 795, 854, 857, 866
BlsI GCNGC 9 cut(s) 201, 357, 424, 681, 758, 796, 855, 858, 867
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 308, 428
Bme18I GGWCC 3 cut(s) 393, 529, 616
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 4 cut(s) 39, 393, 529, 616
BmiI GGNNCC 5 cut(s) 130, 243, 359, 394, 432
BmrFI CCNGG 2 cut(s) 308, 428
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 3 cut(s) 471, 477, 483
BpmI CTGGAG 3 cut(s) 71, 344, 371
Bpu10I CCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 2 cut(s) 537, 821
BpuMI CCSGG 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 306, 426, 582
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 169, 659, 763
Bse118I RCCGGY 4 cut(s) 244, 652, 759, 763
Bse1I ACTGG 2 cut(s) 361, 373
Bse8I GATNNNNATC 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 306, 426, 582
BseGI GGATG 1 cut(s) 529
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 4 cut(s) 36, 169, 659, 763
BseNI ACTGG 2 cut(s) 361, 373
BseRI GAGGAG 3 cut(s) 71, 74, 512
BseX3I CGGCCG 1 cut(s) 761
BseXI GCAGC 6 cut(s) 211, 434, 666, 852, 865, 868
Bsh1236I CGCG 2 cut(s) 674, 809
Bsh1285I CGRYCG 3 cut(s) 764, 771, 885
BshFI GGCC 5 cut(s) 41, 248, 503, 704, 763
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 3 cut(s) 764, 771, 885
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 7 cut(s) 239, 245, 428, 653, 660, 760, 764
BslI CCNNNNNNNGG 4 cut(s) 36, 169, 659, 763
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 5 cut(s) 41, 248, 503, 704, 763
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 2 cut(s) 537, 821
Bsp1286I GDGCHC 1 cut(s) 456
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 4 cut(s) 182, 233, 335, 882
Bsp19I CCATGG 1 cut(s) 582
BspANI GGCC 5 cut(s) 41, 248, 503, 704, 763
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 2 cut(s) 674, 809
BspHI TCATGA 2 cut(s) 93, 460
BspLI GGNNCC 5 cut(s) 130, 243, 359, 394, 432
BspMAI CTGCAG 2 cut(s) 615, 870
BspT104I TTCGAA 2 cut(s) 537, 821
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 355
BsrFI RCCGGY 4 cut(s) 244, 652, 759, 763
BsrI ACTGG 2 cut(s) 361, 373
BssAI RCCGGY 4 cut(s) 244, 652, 759, 763
BssECI CCNNGG 3 cut(s) 306, 426, 582
BssMI GATC 4 cut(s) 182, 233, 335, 882
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 70, 772
Bst6I CTCTTC 5 cut(s) 80, 480, 489, 510, 561
BstBI TTCGAA 2 cut(s) 537, 821
BstC8I GCNNGC 7 cut(s) 303, 401, 602, 654, 706, 761, 765
BstDEI CTNAG 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 674, 809
BstKTI GATC 4 cut(s) 185, 236, 338, 885
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 182, 233, 335, 882
BstMCI CGRYCG 3 cut(s) 764, 771, 885
BstMWI GCNNNNNNNGC 7 cut(s) 355, 509, 610, 794, 862, 865, 871
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 306, 426
BstSFI CTRYAG 4 cut(s) 229, 404, 611, 866
BstUI CGCG 2 cut(s) 674, 809
BstV1I GCAGC 6 cut(s) 211, 434, 666, 852, 865, 868
BstV2I GAAGAC 3 cut(s) 471, 477, 483
BstX2I RGATCY 3 cut(s) 182, 233, 335
BstYI RGATCY 3 cut(s) 182, 233, 335
BstZI CGGCCG 1 cut(s) 761
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 5 cut(s) 41, 248, 503, 704, 763
BtgI CCRYGG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 625
BtsCI GGATG 1 cut(s) 529
Cac8I GCNNGC 7 cut(s) 303, 401, 602, 654, 706, 761, 765
CaiI CAGNNNCTG 2 cut(s) 859, 874
CciI TCATGA 2 cut(s) 93, 460
Cfr10I RCCGGY 4 cut(s) 244, 652, 759, 763
Cfr13I GGNCC 4 cut(s) 39, 393, 529, 616
CseI GACGC 1 cut(s) 815
Csp6I GTAC 2 cut(s) 444, 892
CviAII CATG 6 cut(s) 46, 94, 346, 461, 583, 901
CviQI GTAC 2 cut(s) 444, 892
DdeI CTNAG 1 cut(s) 124
DpnI GATC 4 cut(s) 184, 235, 337, 884
DpnII GATC 4 cut(s) 182, 233, 335, 882
DrdI GACNNNNNNGTC 1 cut(s) 623
DriI GACNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 3 cut(s) 246, 702, 761
EagI CGGCCG 1 cut(s) 761
Eam1104I CTCTTC 5 cut(s) 80, 480, 489, 510, 561
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 5 cut(s) 80, 480, 489, 510, 561
EciI GGCGGA 2 cut(s) 752, 812
EclXI CGGCCG 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 3 cut(s) 393, 529, 616
Eco52I CGGCCG 1 cut(s) 761
Eco57I CTGAAG 2 cut(s) 534, 881
Eco88I CYCGRG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 6 cut(s) 49, 97, 349, 464, 586, 904
FaiI YATR 7 cut(s) 47, 95, 258, 347, 462, 584, 902
FatI CATG 6 cut(s) 45, 93, 345, 460, 582, 900
FauI CCCGC 3 cut(s) 306, 408, 679
Fnu4HI GCNGC 9 cut(s) 200, 356, 423, 680, 757, 795, 854, 857, 866
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 9 cut(s) 200, 356, 423, 680, 757, 795, 854, 857, 866
GluI GCNGC 9 cut(s) 200, 356, 423, 680, 757, 795, 854, 857, 866
GsuI CTGGAG 3 cut(s) 71, 344, 371
HaeIII GGCC 5 cut(s) 41, 248, 503, 704, 763
HapII CCGG 7 cut(s) 239, 245, 428, 653, 660, 760, 764
HgaI GACGC 1 cut(s) 815
Hin1II CATG 6 cut(s) 49, 97, 349, 464, 586, 904
HincII GTYRAC 2 cut(s) 60, 907
HindII GTYRAC 2 cut(s) 60, 907
HinfI GANTC 6 cut(s) 11, 272, 488, 534, 818, 878
HpaI GTTAAC 1 cut(s) 60
HpaII CCGG 7 cut(s) 239, 245, 428, 653, 660, 760, 764
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 3 cut(s) 60, 595, 907
Hpy188I TCNGA 3 cut(s) 277, 493, 643
Hpy188III TCNNGA 4 cut(s) 94, 239, 385, 461
Hpy8I GTNNAC 3 cut(s) 60, 595, 907
Hpy99I CGWCG 2 cut(s) 485, 809
HpyAV CCTTC 5 cut(s) 351, 542, 554, 769, 778
HpyCH4III ACNGT 2 cut(s) 70, 772
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 4 cut(s) 199, 379, 613, 868
HpyF10VI GCNNNNNNNGC 7 cut(s) 355, 509, 610, 794, 862, 865, 871
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 6 cut(s) 49, 97, 349, 464, 586, 904
Kpn2I TCCGGA 1 cut(s) 238
KroI GCCGGC 3 cut(s) 652, 759, 763
KroNI GCCGGC 3 cut(s) 654, 761, 765
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 182, 233, 335, 882
LmnI GCTCC 2 cut(s) 352, 363
Lsp1109I GCAGC 6 cut(s) 211, 434, 666, 852, 865, 868
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 624
MalI GATC 4 cut(s) 184, 235, 337, 884
MbiI CCGCTC 1 cut(s) 355
MboI GATC 4 cut(s) 182, 233, 335, 882
MflI RGATCY 3 cut(s) 182, 233, 335
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 2 cut(s) 33, 253
MlyI GAGTC 2 cut(s) 497, 872
MmeI TCCRAC 2 cut(s) 471, 501
MroI TCCGGA 1 cut(s) 238
MroNI GCCGGC 3 cut(s) 652, 759, 763
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 3 cut(s) 54, 202, 859
MspI CCGG 7 cut(s) 239, 245, 428, 653, 660, 760, 764
MspR9I CCNGG 2 cut(s) 308, 428
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 2 cut(s) 674, 809
MwoI GCNNNNNNNGC 7 cut(s) 355, 509, 610, 794, 862, 865, 871
NaeI GCCGGC 3 cut(s) 654, 761, 765
NciI CCSGG 1 cut(s) 428
NcoI CCATGG 1 cut(s) 582
NdeII GATC 4 cut(s) 182, 233, 335, 882
NgoMIV GCCGGC 3 cut(s) 652, 759, 763
NlaIII CATG 6 cut(s) 49, 97, 349, 464, 586, 904
NlaIV GGNNCC 5 cut(s) 130, 243, 359, 394, 432
NspV TTCGAA 2 cut(s) 537, 821
PagI TCATGA 2 cut(s) 93, 460
PcsI WCGNNNNNNNCGW 2 cut(s) 480, 738
PdiI GCCGGC 3 cut(s) 654, 761, 765
PfeI GAWTC 4 cut(s) 11, 272, 534, 818
PflFI GACNNNGTC 1 cut(s) 902
PkrI GCNGC 9 cut(s) 201, 357, 424, 681, 758, 796, 855, 858, 867
Ple19I CGATCG 1 cut(s) 885
PleI GAGTC 2 cut(s) 496, 872
PpsI GAGTC 2 cut(s) 496, 872
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 5 cut(s) 130, 243, 359, 394, 432
PspPI GGNCC 4 cut(s) 39, 393, 529, 616
PstI CTGCAG 2 cut(s) 615, 870
PstNI CAGNNNCTG 2 cut(s) 859, 874
PsuI RGATCY 3 cut(s) 182, 233, 335
PsyI GACNNNGTC 1 cut(s) 902
PvuI CGATCG 1 cut(s) 885
PvuII CAGCTG 2 cut(s) 54, 859
RsaI GTAC 2 cut(s) 445, 893
RsaNI GTAC 2 cut(s) 444, 892
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 9 cut(s) 200, 356, 423, 680, 757, 795, 854, 857, 866
Sau3AI GATC 4 cut(s) 182, 233, 335, 882
Sau96I GGNCC 4 cut(s) 39, 393, 529, 616
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 2 cut(s) 497, 872
ScrFI CCNGG 2 cut(s) 308, 428
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 4 cut(s) 229, 404, 611, 866
SfuI TTCGAA 2 cut(s) 537, 821
SinI GGWCC 3 cut(s) 393, 529, 616
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 2 cut(s) 33, 253
StyD4I CCNGG 2 cut(s) 306, 426
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 70, 772
TaiI ACGT 1 cut(s) 627
TaqI TCGA 5 cut(s) 315, 537, 732, 821, 881
TaqII GACCGA 1 cut(s) 546
TasI AATT 2 cut(s) 33, 253
TatI WGTACW 1 cut(s) 443
TauI GCSGC 3 cut(s) 358, 759, 797
TfiI GAWTC 4 cut(s) 11, 272, 534, 818
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 6 cut(s) 199, 422, 679, 853, 856, 865
TspDTI ATGAA 5 cut(s) 62, 273, 477, 707, 826
TspGWI ACGGA 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 902
VpaK11BI GGWCC 3 cut(s) 393, 529, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.