Rh6BG508900

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008302
Physical Location & Seq
Forward (+)
70555206 .. 70556300
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG508900.1

Sequence Viewer

Length: 918 bp
ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTTCTCTTCCTCCTCCTCCAGCTCATGATTGGCACCATCTTCATTGCTTCCAGCTTAGGCACCCAGAAGCACCACGACCACGACCACCACCAGCAGCAGCAGCAACAAGGCTTGGCGAGGTCTCCCTCTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGCCTACAGATCTCCGGAACCGGCCACGAATTATGAAAAACCACCTGAATCCGAGACCCATTTCGCTTTCCCGCACGCCCAGGAGGTGGAACAGCCCAAACTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTCCCAGTTCCACTTCCCGAAAGAGTCCAGCCCGTTACAGCCCCGAGATTTCGCAGTCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGACGACGAAGAGTCGGAAGAGGAGGCAGGAGAGGCTGAAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGGTGAGGAGAAAGAGCAGACCCTGGACGAGATTTACAGCCAGCTAGATCTGCAGGACCACCACGTCAGCAGGACGACATCGGACACCCAGCCGGCTTCCGGCGACGTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCGCCAAGTCGGCATTTGCTCATTTCGAGGCGGCCGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCGGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCATTAGGTACAAGGACATGATCAACAGAGGAAGCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

305

Amino Acids

34.93

Weight (kDa)

4.99

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 1.4e-11 Domain of unknown function (DUF4408)
DUF761 PF05553 267 - 301 3.1e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
AccB1I GGYRCC 2 cut(s) 101, 128
AccB7I CCANNNNNTGG 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 2 cut(s) 665, 800
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 9 cut(s) 208, 302, 358, 663, 728, 748, 785, 788, 800
AcoI YGGCCR 4 cut(s) 252, 693, 729, 752
AcuI CTGAAG 2 cut(s) 534, 872
AfaI GTAC 3 cut(s) 451, 660, 884
AfiI CCNNNNNNNGG 4 cut(s) 36, 316, 650, 754
AgsI TTSAA 3 cut(s) 214, 373, 841
AhdI GACNNNNNGTC 1 cut(s) 487
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 2 cut(s) 309, 573
AluBI AGCT 7 cut(s) 54, 91, 123, 595, 670, 850, 856
AluI AGCT 7 cut(s) 54, 91, 123, 595, 670, 850, 856
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 195, 278
AlwNI CAGNNNCTG 3 cut(s) 574, 850, 865
Ama87I CYCGRG 1 cut(s) 417
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 5 cut(s) 39, 252, 693, 729, 752
ApeKI GCWGC 8 cut(s) 163, 166, 169, 205, 670, 844, 847, 856
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 3 cut(s) 39, 529, 607
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 2 cut(s) 537, 812
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 2 cut(s) 529, 607
BanI GGYRCC 2 cut(s) 101, 128
BbsI GAAGAC 2 cut(s) 477, 483
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 8 cut(s) 175, 178, 181, 217, 657, 843, 856, 859
BccI CCATC 2 cut(s) 113, 227
BciT130I CCWGG 2 cut(s) 311, 575
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 894
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 195, 278
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 3 cut(s) 235, 602, 857
BfoI RGCGCY 1 cut(s) 702
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 707
BglII AGATCT 3 cut(s) 239, 338, 598
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 311, 434, 575
Bme18I GGWCC 2 cut(s) 529, 607
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 417
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 3 cut(s) 39, 529, 607
BmiI GGNNCC 5 cut(s) 103, 130, 249, 362, 438
BmrFI CCNGG 3 cut(s) 311, 434, 575
BmrI ACTGGG 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 477, 483
BpmI CTGGAG 3 cut(s) 71, 347, 374
Bpu10I CCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 2 cut(s) 537, 812
BpuMI CCSGG 1 cut(s) 434
BsaI GGTCTC 2 cut(s) 195, 278
BsaJI CCNNGG 2 cut(s) 309, 573
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 316, 650, 754
Bse118I RCCGGY 4 cut(s) 250, 643, 750, 754
Bse1I ACTGG 2 cut(s) 364, 379
Bse3DI GCAATG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 311, 575
BseDI CCNNGG 2 cut(s) 309, 573
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 4 cut(s) 36, 316, 650, 754
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 364, 379
BseRI GAGGAG 4 cut(s) 71, 74, 512, 572
BseX3I CGGCCG 2 cut(s) 729, 752
BseXI GCAGC 8 cut(s) 175, 178, 181, 217, 657, 843, 856, 859
BseYI CCCAGC 1 cut(s) 639
Bsh1236I CGCG 2 cut(s) 665, 800
Bsh1285I CGRYCG 3 cut(s) 732, 755, 762
BshFI GGCC 5 cut(s) 41, 254, 695, 731, 754
BshNI GGYRCC 2 cut(s) 101, 128
BsiEI CGRYCG 3 cut(s) 732, 755, 762
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 7 cut(s) 245, 251, 434, 644, 651, 751, 755
BslFI GGGAC 2 cut(s) 361, 416
BslI CCNNNNNNNGG 4 cut(s) 36, 316, 650, 754
BsmAI GTCTC 2 cut(s) 195, 278
BsmFI GGGAC 2 cut(s) 361, 416
BsnI GGCC 5 cut(s) 41, 254, 695, 731, 754
Bso31I GGTCTC 2 cut(s) 195, 278
BsoBI CYCGRG 1 cut(s) 417
Bsp119I TTCGAA 2 cut(s) 537, 812
Bsp1286I GDGCHC 1 cut(s) 462
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 5 cut(s) 239, 338, 598, 873, 894
BspACI CCGC 9 cut(s) 208, 302, 358, 663, 728, 748, 785, 788, 800
BspANI GGCC 5 cut(s) 41, 254, 695, 731, 754
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 665, 800
BspHI TCATGA 2 cut(s) 93, 466
BspLI GGNNCC 5 cut(s) 103, 130, 249, 362, 438
BspMAI CTGCAG 2 cut(s) 606, 861
BspT104I TTCGAA 2 cut(s) 537, 812
BspT107I GGYRCC 2 cut(s) 101, 128
BspTNI GGTCTC 2 cut(s) 195, 278
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 4 cut(s) 250, 643, 750, 754
BsrI ACTGG 2 cut(s) 364, 379
BssAI RCCGGY 4 cut(s) 250, 643, 750, 754
BssECI CCNNGG 2 cut(s) 309, 573
BssMI GATC 5 cut(s) 239, 338, 598, 873, 894
Bst2UI CCWGG 2 cut(s) 311, 575
Bst4CI ACNGT 2 cut(s) 70, 763
Bst6I CTCTTC 4 cut(s) 80, 480, 489, 510
BstBI TTCGAA 2 cut(s) 537, 812
BstC8I GCNNGC 6 cut(s) 306, 593, 645, 697, 752, 756
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 665, 800
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 5 cut(s) 242, 341, 601, 876, 897
BstMAI GTCTC 2 cut(s) 195, 278
BstMBI GATC 5 cut(s) 239, 338, 598, 873, 894
BstMCI CGRYCG 3 cut(s) 732, 755, 762
BstMWI GCNNNNNNNGC 9 cut(s) 169, 358, 509, 601, 707, 785, 853, 856, 862
BstNI CCWGG 2 cut(s) 311, 575
BstSCI CCNGG 3 cut(s) 309, 432, 573
BstSFI CTRYAG 3 cut(s) 235, 602, 857
BstUI CGCG 2 cut(s) 665, 800
BstV1I GCAGC 8 cut(s) 175, 178, 181, 217, 657, 843, 856, 859
BstV2I GAAGAC 2 cut(s) 477, 483
BstX2I RGATCY 3 cut(s) 239, 338, 598
BstYI RGATCY 3 cut(s) 239, 338, 598
BstZI CGGCCG 2 cut(s) 729, 752
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 5 cut(s) 41, 254, 695, 731, 754
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 1 cut(s) 529
Cac8I GCNNGC 6 cut(s) 306, 593, 645, 697, 752, 756
CaiI CAGNNNCTG 3 cut(s) 574, 850, 865
CciI TCATGA 2 cut(s) 93, 466
CfoI GCGC 1 cut(s) 701
Cfr10I RCCGGY 4 cut(s) 250, 643, 750, 754
Cfr13I GGNCC 3 cut(s) 39, 529, 607
CseI GACGC 1 cut(s) 806
Csp6I GTAC 3 cut(s) 450, 659, 883
CviAII CATG 5 cut(s) 46, 94, 349, 467, 892
CviQI GTAC 3 cut(s) 450, 659, 883
DdeI CTNAG 1 cut(s) 124
DpnI GATC 5 cut(s) 241, 340, 600, 875, 896
DpnII GATC 5 cut(s) 239, 338, 598, 873, 894
DrdI GACNNNNNNGTC 1 cut(s) 614
DriI GACNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 4 cut(s) 252, 693, 729, 752
EagI CGGCCG 2 cut(s) 729, 752
Eam1104I CTCTTC 4 cut(s) 80, 480, 489, 510
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 4 cut(s) 80, 480, 489, 510
EciI GGCGGA 1 cut(s) 803
EclXI CGGCCG 2 cut(s) 729, 752
Eco31I GGTCTC 2 cut(s) 195, 278
Eco47I GGWCC 2 cut(s) 529, 607
Eco52I CGGCCG 2 cut(s) 729, 752
Eco57I CTGAAG 2 cut(s) 534, 872
Eco88I CYCGRG 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 309, 573
FaeI CATG 5 cut(s) 49, 97, 352, 470, 895
FaiI YATR 6 cut(s) 47, 95, 264, 350, 468, 893
FaqI GGGAC 2 cut(s) 361, 416
FatI CATG 5 cut(s) 45, 93, 348, 466, 891
FauI CCCGC 2 cut(s) 309, 670
FbaI TGATCA 1 cut(s) 894
FokI GGATG 1 cut(s) 536
FspBI CTAG 1 cut(s) 596
GlaI GCGC 1 cut(s) 700
GsaI CCCAGC 1 cut(s) 643
GsuI CTGGAG 3 cut(s) 71, 347, 374
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 5 cut(s) 41, 254, 695, 731, 754
HapII CCGG 7 cut(s) 245, 251, 434, 644, 651, 751, 755
HgaI GACGC 1 cut(s) 806
HhaI GCGC 1 cut(s) 701
Hin1II CATG 5 cut(s) 49, 97, 352, 470, 895
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 6 cut(s) 11, 278, 398, 488, 809, 869
HpaI GTTAAC 1 cut(s) 60
HpaII CCGG 7 cut(s) 245, 251, 434, 644, 651, 751, 755
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 283, 493, 634
Hpy188III TCNNGA 4 cut(s) 94, 245, 391, 467
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 3 cut(s) 485, 659, 800
HpyAV CCTTC 5 cut(s) 354, 379, 545, 760, 769
HpyCH4III ACNGT 2 cut(s) 70, 763
HpyCH4IV ACGT 2 cut(s) 615, 657
HpyCH4V TGCA 3 cut(s) 205, 604, 859
HpyF10VI GCNNNNNNNGC 9 cut(s) 169, 358, 509, 601, 707, 785, 853, 856, 862
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 615, 657
Hsp92II CATG 5 cut(s) 49, 97, 352, 470, 895
HspAI GCGC 1 cut(s) 699
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 3 cut(s) 643, 750, 754
KroNI GCCGGC 3 cut(s) 645, 752, 756
Ksp22I TGATCA 1 cut(s) 894
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 5 cut(s) 239, 338, 598, 873, 894
LmnI GCTCC 2 cut(s) 355, 366
Lsp1109I GCAGC 8 cut(s) 175, 178, 181, 217, 657, 843, 856, 859
MaeI CTAG 1 cut(s) 596
MaeII ACGT 2 cut(s) 615, 657
MaeIII GTNAC 1 cut(s) 408
MalI GATC 5 cut(s) 241, 340, 600, 875, 896
MbiI CCGCTC 1 cut(s) 358
MboI GATC 5 cut(s) 239, 338, 598, 873, 894
MflI RGATCY 3 cut(s) 239, 338, 598
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 3 cut(s) 33, 259, 533
MlyI GAGTC 3 cut(s) 407, 497, 863
MmeI TCCRAC 2 cut(s) 471, 501
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 3 cut(s) 643, 750, 754
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 3 cut(s) 54, 208, 850
MspI CCGG 7 cut(s) 245, 251, 434, 644, 651, 751, 755
MspR9I CCNGG 3 cut(s) 311, 434, 575
MvaI CCWGG 2 cut(s) 311, 575
MvnI CGCG 2 cut(s) 665, 800
MwoI GCNNNNNNNGC 9 cut(s) 169, 358, 509, 601, 707, 785, 853, 856, 862
NaeI GCCGGC 3 cut(s) 645, 752, 756
NciI CCSGG 1 cut(s) 434
NdeII GATC 5 cut(s) 239, 338, 598, 873, 894
NgoMIV GCCGGC 3 cut(s) 643, 750, 754
NlaIII CATG 5 cut(s) 49, 97, 352, 470, 895
NlaIV GGNNCC 5 cut(s) 103, 130, 249, 362, 438
NspV TTCGAA 2 cut(s) 537, 812
PagI TCATGA 2 cut(s) 93, 466
PcsI WCGNNNNNNNCGW 2 cut(s) 480, 729
PdiI GCCGGC 3 cut(s) 645, 752, 756
PfeI GAWTC 3 cut(s) 11, 278, 809
PflMI CCANNNNNTGG 1 cut(s) 316
PfoI TCCNGGA 1 cut(s) 432
PleI GAGTC 3 cut(s) 406, 496, 863
PpsI GAGTC 3 cut(s) 406, 496, 863
Psp6I CCWGG 2 cut(s) 309, 573
PspFI CCCAGC 1 cut(s) 639
PspGI CCWGG 2 cut(s) 309, 573
PspN4I GGNNCC 5 cut(s) 103, 130, 249, 362, 438
PspPI GGNCC 3 cut(s) 39, 529, 607
PstI CTGCAG 2 cut(s) 606, 861
PstNI CAGNNNCTG 3 cut(s) 574, 850, 865
PsuI RGATCY 3 cut(s) 239, 338, 598
PvuII CAGCTG 2 cut(s) 54, 850
RsaI GTAC 3 cut(s) 451, 660, 884
RsaNI GTAC 3 cut(s) 450, 659, 883
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 5 cut(s) 239, 338, 598, 873, 894
Sau96I GGNCC 3 cut(s) 39, 529, 607
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 3 cut(s) 407, 497, 863
ScrFI CCNGG 3 cut(s) 311, 434, 575
SduI GDGCHC 1 cut(s) 462
SfcI CTRYAG 3 cut(s) 235, 602, 857
SfuI TTCGAA 2 cut(s) 537, 812
SinI GGWCC 2 cut(s) 529, 607
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 3 cut(s) 33, 259, 533
SsiI CCGC 9 cut(s) 208, 302, 358, 663, 728, 748, 785, 788, 800
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 3 cut(s) 309, 432, 573
TaaI ACNGT 2 cut(s) 70, 763
TaiI ACGT 2 cut(s) 618, 660
TaqI TCGA 4 cut(s) 537, 723, 812, 872
TasI AATT 3 cut(s) 33, 259, 533
TatI WGTACW 1 cut(s) 449
TauI GCSGC 4 cut(s) 361, 731, 750, 788
TfiI GAWTC 3 cut(s) 11, 278, 809
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 8 cut(s) 163, 166, 169, 205, 670, 844, 847, 856
TspDTI ATGAA 6 cut(s) 62, 100, 279, 483, 698, 817
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 529, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.