Rw0G006860

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00255
OG0008302
Physical Location & Seq
Forward (+)
19544 .. 20530
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006860.1

Sequence Viewer

Length: 951 bp
ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTCGGGCCTCCATGAACAGCTGGTTAACCCCAACTTTCCTCTTCCTCCTCCTCCAGCTCATGATTGGCATCATCTTCATTGCTTCCAGCCTCGGCACCCAGAAGCCCCACGACCAAGACAACCACCACCACCACGACCACCACCAACAAGGCTTGGCGAGATCTCCCTTTGTTTTATCTCCAGAACCGGCCACGAATTACGAAAAATCCCCTGAATTCGAGACCCATTTTGCTTTCCCGCACGCCCAGGAGGTCGAACAACCCAAGCTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTTCCAGTTCCACTTCCCCAAAGAATCCAGCCTGCTACAGCCCCGAGACTTGGCAGTCCCGGACCCGGAACCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGACGAAGAGTCGGAAGAGGAAGCCGGAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGGTAAAGAGAAAGACCAGACCCAGCGCCAAGTCGGCATTTGCTCATTTCGCGGCGGACGATTATATCACAAAGTGTTCATATTTTTTTTTAAAAAAACACTATTATGTAGATATATACTATTTTTGTTTGCAATATACCAAAACTATGCAAGTGGTCTGGTGGTTGGGCCATTCATTTGCATATGCTTTGGGAGGGGTTCGAATCTCCTCAATCTCAAAACTGGAATTAATTTTGGATTTTCCATATTTTGTTGCCCAAGGTCAGTTTGGGAATTTCACATGCGTGTGGACCCCACTATTGATGAGTTGGAAATGCCAGGTCAGCAGTTAACGACTGAAATTGACGGAATTGAGTCAGAAGGACTTCTTGGACGAGAAAATAATACCGCAGGGGTGTTTTTGATGAAATTGAAAGTCGAGGGACTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

316

Amino Acids

36.25

Weight (kDa)

5.07

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 2.2e-09 Domain of unknown function (DUF4408)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 1 cut(s) 570
AciI CCGC 5 cut(s) 272, 328, 570, 573, 906
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 248, 791
AdeI CACNNNGTG 1 cut(s) 592
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 4 cut(s) 36, 394, 409, 415
AgsI TTSAA 2 cut(s) 343, 931
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 2 cut(s) 279, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AleI CACNNNNGTG 1 cut(s) 801
AluBI AGCT 3 cut(s) 54, 91, 301
AluI AGCT 3 cut(s) 54, 91, 301
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 2 cut(s) 248, 384
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 3 cut(s) 39, 222, 686
ApoI RAATTY 2 cut(s) 248, 791
AseI ATTAAT 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 5 cut(s) 39, 406, 496, 686, 808
AsuC2I CCSGG 2 cut(s) 404, 410
AsuII TTCGAA 2 cut(s) 504, 719
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 3 cut(s) 406, 496, 808
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 444
BciT130I CCWGG 2 cut(s) 281, 837
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 404, 410
BcoDI GTCTC 2 cut(s) 248, 384
BfmI CTRYAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 547
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 552
BglII AGATCT 2 cut(s) 194, 308
BisI GCNGC 2 cut(s) 329, 571
BlsI GCNGC 2 cut(s) 330, 572
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 4 cut(s) 281, 404, 410, 837
Bme18I GGWCC 3 cut(s) 406, 496, 808
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 5 cut(s) 39, 406, 496, 686, 808
BmiI GGNNCC 6 cut(s) 130, 332, 408, 414, 420, 810
BmrFI CCNGG 4 cut(s) 281, 404, 410, 837
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 4 cut(s) 71, 198, 317, 344
Bpu14I TTCGAA 2 cut(s) 504, 719
BpuMI CCSGG 2 cut(s) 404, 410
BsaBI GATNNNNATC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 124, 279, 776
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 394, 409, 415
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 3 cut(s) 334, 349, 745
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 2 cut(s) 281, 837
BseDI CCNNGG 3 cut(s) 124, 279, 776
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 4 cut(s) 36, 394, 409, 415
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 3 cut(s) 334, 349, 745
BseRI GAGGAG 3 cut(s) 71, 74, 716
BseYI CCCAGC 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 3 cut(s) 41, 224, 688
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 5 cut(s) 221, 404, 410, 416, 480
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 4 cut(s) 36, 394, 409, 415
BsmAI GTCTC 2 cut(s) 248, 384
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 3 cut(s) 41, 224, 688
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 387
Bsp119I TTCGAA 2 cut(s) 504, 719
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 194, 308
BspACI CCGC 5 cut(s) 272, 328, 570, 573, 906
BspANI GGCC 3 cut(s) 41, 224, 688
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 2 cut(s) 93, 448
BspLI GGNNCC 6 cut(s) 130, 332, 408, 414, 420, 810
BspT104I TTCGAA 2 cut(s) 504, 719
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 3 cut(s) 334, 349, 745
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 124, 279, 776
BssMI GATC 2 cut(s) 194, 308
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 2 cut(s) 281, 837
Bst6I CTCTTC 3 cut(s) 80, 456, 465
BstBI TTCGAA 2 cut(s) 504, 719
BstC8I GCNNGC 2 cut(s) 276, 377
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 2 cut(s) 197, 311
BstMAI GTCTC 2 cut(s) 248, 384
BstMBI GATC 2 cut(s) 194, 308
BstMWI GCNNNNNNNGC 4 cut(s) 328, 552, 567, 841
BstNI CCWGG 2 cut(s) 281, 837
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 4 cut(s) 279, 402, 408, 835
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 570
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 194, 308
BstYI RGATCY 2 cut(s) 194, 308
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 41, 224, 688
BtsCI GGATG 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 276, 377
CciI TCATGA 2 cut(s) 93, 448
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 5 cut(s) 39, 406, 496, 686, 808
Csp6I GTAC 1 cut(s) 432
CviAII CATG 5 cut(s) 46, 94, 319, 449, 799
CviQI GTAC 1 cut(s) 432
DpnI GATC 2 cut(s) 196, 310
DpnII GATC 2 cut(s) 194, 308
DraI TTTAAA 1 cut(s) 610
DraIII CACNNNGTG 1 cut(s) 592
DrdI GACNNNNNNGTC 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 80, 456, 465
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 3 cut(s) 80, 456, 465
EciI GGCGGA 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 776
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 3 cut(s) 406, 496, 808
Eco88I CYCGRG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 279, 835
EcoT14I CCWWGG 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 5 cut(s) 49, 97, 322, 452, 802
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 1 cut(s) 386
FatI CATG 5 cut(s) 45, 93, 318, 448, 798
FauI CCCGC 1 cut(s) 279
FauNDI CATATG 1 cut(s) 701
Fnu4HI GCNGC 2 cut(s) 329, 571
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 329, 571
GlaI GCGC 1 cut(s) 545
GluI GCNGC 2 cut(s) 329, 571
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 4 cut(s) 71, 198, 317, 344
HaeII RGCGCY 1 cut(s) 547
HaeIII GGCC 3 cut(s) 41, 224, 688
HapII CCGG 5 cut(s) 221, 404, 410, 416, 480
HhaI GCGC 1 cut(s) 546
Hin1II CATG 5 cut(s) 49, 97, 322, 452, 802
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 2 cut(s) 60, 849
HindII GTYRAC 2 cut(s) 60, 849
HinfI GANTC 5 cut(s) 11, 368, 464, 721, 872
HpaI GTTAAC 2 cut(s) 60, 849
HpaII CCGG 5 cut(s) 221, 404, 410, 416, 480
Hpy166II GTNNAC 3 cut(s) 60, 808, 849
Hpy188I TCNGA 2 cut(s) 469, 877
Hpy188III TCNNGA 4 cut(s) 94, 215, 253, 449
Hpy8I GTNNAC 3 cut(s) 60, 808, 849
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 4 cut(s) 324, 349, 512, 872
HpyCH4V TGCA 3 cut(s) 650, 668, 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 552, 567, 841
Hsp92II CATG 5 cut(s) 49, 97, 322, 452, 802
HspAI GCGC 1 cut(s) 544
KspAI GTTAAC 2 cut(s) 60, 849
Kzo9I GATC 2 cut(s) 194, 308
LmnI GCTCC 3 cut(s) 306, 325, 336
LweI GCATC 1 cut(s) 111
MalI GATC 2 cut(s) 196, 310
MbiI CCGCTC 1 cut(s) 328
MboI GATC 2 cut(s) 194, 308
MboII GAAGA 7 cut(s) 67, 100, 464, 473, 482, 524, 527
MflI RGATCY 2 cut(s) 194, 308
MhlI GDGCHC 1 cut(s) 444
MlyI GAGTC 2 cut(s) 473, 881
MmeI TCCRAC 3 cut(s) 447, 468, 807
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 4 cut(s) 59, 609, 747, 848
MslI CAYNNNNRTG 4 cut(s) 447, 622, 801, 803
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 5 cut(s) 221, 404, 410, 416, 480
MspR9I CCNGG 4 cut(s) 281, 404, 410, 837
MvaI CCWGG 2 cut(s) 281, 837
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 328, 552, 567, 841
NciI CCSGG 2 cut(s) 404, 410
NdeI CATATG 1 cut(s) 701
NdeII GATC 2 cut(s) 194, 308
NlaIII CATG 5 cut(s) 49, 97, 322, 452, 802
NlaIV GGNNCC 6 cut(s) 130, 332, 408, 414, 420, 810
NmeAIII GCCGAG 1 cut(s) 105
NspI RCATGY 1 cut(s) 802
NspV TTCGAA 2 cut(s) 504, 719
OliI CACNNNNGTG 1 cut(s) 801
PagI TCATGA 2 cut(s) 93, 448
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 11, 368, 721
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 2 cut(s) 330, 572
PleI GAGTC 2 cut(s) 472, 880
PpsI GAGTC 2 cut(s) 472, 880
PshBI ATTAAT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 279, 835
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 2 cut(s) 279, 835
PspN4I GGNNCC 6 cut(s) 130, 332, 408, 414, 420, 810
PspPI GGNCC 5 cut(s) 39, 406, 496, 686, 808
PsuI RGATCY 2 cut(s) 194, 308
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 4 cut(s) 447, 622, 801, 803
SaqAI TTAA 4 cut(s) 59, 609, 747, 848
SatI GCNGC 2 cut(s) 329, 571
Sau3AI GATC 2 cut(s) 194, 308
Sau96I GGNCC 5 cut(s) 39, 406, 496, 686, 808
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 2 cut(s) 473, 881
ScrFI CCNGG 4 cut(s) 281, 404, 410, 837
SduI GDGCHC 1 cut(s) 444
SetI ASST 7 cut(s) 56, 93, 288, 303, 523, 782, 841
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 380
SfuI TTCGAA 2 cut(s) 504, 719
SinI GGWCC 3 cut(s) 406, 496, 808
SmiMI CAYNNNNRTG 4 cut(s) 447, 622, 801, 803
SsiI CCGC 5 cut(s) 272, 328, 570, 573, 906
StyD4I CCNGG 4 cut(s) 279, 402, 408, 835
StyI CCWWGG 1 cut(s) 776
TaqI TCGA 5 cut(s) 252, 288, 504, 719, 936
TatI WGTACW 1 cut(s) 431
TauI GCSGC 2 cut(s) 331, 573
TfiI GAWTC 3 cut(s) 11, 368, 721
Tru1I TTAA 4 cut(s) 59, 609, 747, 848
Tru9I TTAA 4 cut(s) 59, 609, 747, 848
TspDTI ATGAA 6 cut(s) 62, 100, 465, 586, 682, 938
TspGWI ACGGA 1 cut(s) 879
VpaK11BI GGWCC 3 cut(s) 406, 496, 808
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 2 cut(s) 248, 791
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 783
XmnI GAANNNNTTC 1 cut(s) 882
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.