Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

27567290 .. 27570354

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38031.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCTATTGATGAGAATGAGATTAGGATTACCAGCCAAGGGAGGATGCGCAACTACATCACTTATGCCATGACCCTGCTTCAGGAGAAGGGATCAGATGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACCGTGACGATTGTGGAGCTACTTAAGAGAAGAATTGTTGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTCCAAACACTGGAGACAACAAGGCATGTGTCAATGATCGTCATAACGCTGTCAAAGAAGGAAATCAATAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAATTGGTGAAGGCATCTGCAGAGATTGATTATGAAGGAGAGGACTCACCAAGTGGCCGTGGAAGGGGAGGTTACGATGGACCGCAGGCCGATGTGCAGCAAGATGGAGGATACAATGAAGAAGCACCTCCTCAACGTGGCCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCAGCTACAGGTCTAATGGGCCGATCCAGGCACAGCTGCTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

7.89

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 83	2.5e-22	Alba
Rpp20	PF12328	41 - 110	4e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	394
Acc65I	GGTACC	2 cut(s)	9, 369
AccB1I	GGYRCC	2 cut(s)	9, 369
AccB7I	CCANNNNNTGG	2 cut(s)	19, 295
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	5 cut(s)	12, 139, 237, 250, 595
AcoI	YGGCCR	3 cut(s)	445, 529, 541
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	11, 371
AfiI	CCNNNNNNNGG	7 cut(s)	19, 78, 121, 295, 454, 527, 550
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	4 cut(s)	167, 196, 582, 613
AluI	AGCT	4 cut(s)	167, 196, 582, 613
Alw26I	GTCTC	2 cut(s)	32, 293
AlwI	GGATC	5 cut(s)	12, 139, 237, 250, 595
AoxI	GGCC	7 cut(s)	283, 445, 477, 529, 541, 571, 596
ApeKI	GCWGC	3 cut(s)	487, 579, 613
Asp718I	GGTACC	2 cut(s)	9, 369
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	470, 571, 596
AsuHPI	GGTGA	3 cut(s)	215, 409, 429
AvaII	GGWCC	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	9, 369
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	499, 591, 600
BccI	CCATC	2 cut(s)	461, 488
BceAI	ACGGC	4 cut(s)	432, 516, 528, 558
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	32, 293
BfmI	CTRYAG	2 cut(s)	408, 583
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	3 cut(s)	488, 580, 614
BlsI	GCNGC	3 cut(s)	489, 581, 615
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	470, 571, 596
BmiI	GGNNCC	5 cut(s)	11, 244, 270, 371, 572
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	2 cut(s)	75, 413
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	5 cut(s)	76, 448, 532, 544, 574
Bsc4I	CCNNNNNNNGG	7 cut(s)	19, 78, 121, 295, 454, 527, 550
Bse1I	ACTGG	2 cut(s)	226, 300
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	5 cut(s)	76, 448, 532, 544, 574
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	7 cut(s)	19, 78, 121, 295, 454, 527, 550
BseNI	ACTGG	2 cut(s)	226, 300
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	499, 591, 600
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	7 cut(s)	285, 447, 479, 531, 543, 573, 598
BshNI	GGYRCC	2 cut(s)	9, 369
BslI	CCNNNNNNNGG	7 cut(s)	19, 78, 121, 295, 454, 527, 550
BsmAI	GTCTC	2 cut(s)	32, 293
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	7 cut(s)	285, 447, 479, 531, 543, 573, 598
Bsp143I	GATC	5 cut(s)	4, 131, 242, 321, 600
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	7 cut(s)	285, 447, 479, 531, 543, 573, 598
BspLI	GGNNCC	5 cut(s)	11, 244, 270, 371, 572
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	5 cut(s)	12, 139, 237, 250, 595
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	9, 369
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	226, 300
BssECI	CCNNGG	5 cut(s)	76, 448, 532, 544, 574
BssMI	GATC	5 cut(s)	4, 131, 242, 321, 600
BssNAI	GTATAC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	477
BstDSI	CCRYGG	4 cut(s)	448, 532, 544, 574
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	7, 134, 245, 324, 603
BstMAI	GTCTC	2 cut(s)	32, 293
BstMBI	GATC	5 cut(s)	4, 131, 242, 321, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	2 cut(s)	408, 583
BstV1I	GCAGC	3 cut(s)	499, 591, 600
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	7 cut(s)	285, 447, 479, 531, 543, 573, 598
BtgI	CCRYGG	4 cut(s)	448, 532, 544, 574
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	470, 571, 596
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	10, 370
CviAII	CATG	2 cut(s)	109, 311
CviQI	GTAC	2 cut(s)	10, 370
DpnI	GATC	5 cut(s)	6, 133, 244, 323, 602
DpnII	GATC	5 cut(s)	4, 131, 242, 321, 600
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	3 cut(s)	445, 529, 541
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	112, 314
FaiI	YATR	8 cut(s)	105, 110, 158, 231, 254, 312, 329, 423
FatI	CATG	2 cut(s)	108, 310
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	488, 580, 614
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	488, 580, 614
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	3 cut(s)	488, 580, 614
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	7 cut(s)	285, 447, 479, 531, 543, 573, 598
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	112, 314
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	434
HphI	GGTGA	3 cut(s)	215, 409, 429
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	7 cut(s)	121, 275, 337, 394, 419, 447, 561
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	2 cut(s)	410, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	112, 314
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	2 cut(s)	13, 373
Kzo9I	GATC	5 cut(s)	4, 131, 242, 321, 600
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	499, 591, 600
LweI	GCATC	2 cut(s)	75, 413
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	181, 461
MalI	GATC	5 cut(s)	6, 133, 244, 323, 602
MboI	GATC	5 cut(s)	4, 131, 242, 321, 600
MboII	GAAGA	4 cut(s)	174, 212, 219, 521
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	4 cut(s)	141, 210, 237, 392
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	9 cut(s)	75, 271, 296, 424, 452, 491, 528, 531, 548
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	605
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	579
NdeII	GATC	5 cut(s)	4, 131, 242, 321, 600
NlaIII	CATG	2 cut(s)	112, 314
NlaIV	GGNNCC	5 cut(s)	11, 244, 270, 371, 572
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	89
NspI	RCATGY	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	157
PflMI	CCANNNNNTGG	2 cut(s)	19, 295
PkrI	GCNGC	3 cut(s)	489, 581, 615
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	5 cut(s)	11, 244, 270, 371, 572
PspPI	GGNCC	3 cut(s)	470, 571, 596
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	11, 371
RsaNI	GTAC	2 cut(s)	10, 370
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	488, 580, 614
Sau3AI	GATC	5 cut(s)	4, 131, 242, 321, 600
Sau96I	GGNCC	3 cut(s)	470, 571, 596
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	605
SetI	ASST	9 cut(s)	169, 198, 388, 463, 520, 529, 584, 590, 615
SfaNI	GCATC	2 cut(s)	75, 413
SfcI	CTRYAG	2 cut(s)	408, 583
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	3 cut(s)	200, 275, 617
SmoI	CTYRAG	3 cut(s)	200, 275, 617
Sse9I	AATT	4 cut(s)	141, 210, 237, 392
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	529
TasI	AATT	4 cut(s)	141, 210, 237, 392
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	487, 579, 613
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	153, 438, 522
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	2 cut(s)	19, 295
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	119
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.