Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

47401964 .. 47403003

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGAGGAAGGGAGAAGAGAGCTTGGGTTCAGGGCACAAGTGGATTAGAGGAAACAAGATCGGGGAAGGACGCTTCGGCTCTGTGTTCGTTGCTTTCTTCAAGAGACCCTACATCCATATCGACCATATGCCTGAGGCCATGGCGATAAAATCAGCCAAGATGAGGGACTCAGAGTCTATTCAATACGAGCTAGAGGTTTATAGGGACTTGAACAATCATGGTGGTCTTTGCCCCTTCATTATTGAGCATTACGGTGAAGAGGTAACATGGAGCGATGAGGGCGAAGAGGTTTATAACTTGGCGTTGGAAGTTGCATGGGGAAGTCTTGCAAGGCTTATAAAGGTTTTCGGTTCTGGGTTGCCGGAATCTGATGTGCGGCGGTATACCTGTGACCTTCTTGAAGGAATTAGACACATCCGCAAGTGTGGTTATGTCCACTGTGGCTTGAAGCCACAAAATATTCTTCTTGTGGAAAATGAAGATGACGACGTCTATAGGTTCGTGGCCAAAGTGGCTGATTTGGGGTTGGCTAAGAAGAAGGATGAGGTTCAAGGAAGGTGGAGAGGCACACCCATGTACTTGTCTCCGGAGGCTATACTGTACAATGAACAAGAGGAGCCAAGTGATATTTGGGCCTTGGGGTGCATCGTTCTTGAGATGCTCACTGGAGAGTGCCCTCGGAACCATTTTTACGATCATGAGAGTGACACCCTCTACGTTGTTGATGGAATGGTGCCTAAAATCCCGGATACAATCTCAAGTCTTGCAAGGGATTTTCTAGATTGTTGCCTAGCCGAGGAAAGGTCCACAGCCGAAGAGCTTCTGTCTCATCCCTTTGTAGCAGAAGTTGTTAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

287

Amino Acids

32.7

Weight (kDa)

5.15

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 281	1.9e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 269	3.7e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 341
AatII	GACGTC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	3 cut(s)	379, 382, 421
AcoI	YGGCCR	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	2 cut(s)	581, 605
AfiI	CCNNNNNNNGG	3 cut(s)	165, 799, 804
AgsI	TTSAA	6 cut(s)	103, 185, 214, 404, 451, 554
AhdI	GACNNNNNGTC	1 cut(s)	175
AluBI	AGCT	3 cut(s)	24, 193, 823
AluI	AGCT	3 cut(s)	24, 193, 823
Alw26I	GTCTC	3 cut(s)	100, 591, 834
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	3 cut(s)	138, 507, 636
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	636, 807
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	39, 680
BalI	TGGCCA	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	736
BccI	CCATC	1 cut(s)	722
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	3 cut(s)	100, 591, 834
BfaI	CTAG	3 cut(s)	194, 782, 794
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	745
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	807
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	636, 807
BmiI	GGNNCC	3 cut(s)	621, 686, 738
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	2 cut(s)	651, 657
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	677, 745
BpuMI	CCSGG	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	141, 639, 680, 798
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 799, 804
Bse1I	ACTGG	1 cut(s)	673
Bse21I	CCTNAGG	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	589
BseDI	CCNNGG	4 cut(s)	141, 639, 680, 798
BseGI	GGATG	4 cut(s)	114, 417, 550, 832
BseLI	CCNNNNNNNGG	3 cut(s)	165, 799, 804
BseMII	CTCAG	2 cut(s)	126, 186
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	2 cut(s)	39, 680
BshFI	GGCC	3 cut(s)	140, 509, 638
BshNI	GGYRCC	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	365, 590, 749
BslFI	GGGAC	2 cut(s)	182, 221
BslI	CCNNNNNNNGG	3 cut(s)	165, 799, 804
BsmAI	GTCTC	3 cut(s)	100, 591, 834
BsmFI	GGGAC	2 cut(s)	182, 221
BsnI	GGCC	3 cut(s)	140, 509, 638
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	39, 680
Bsp13I	TCCGGA	1 cut(s)	589
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	60, 697
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	3 cut(s)	379, 382, 421
BspANI	GGCC	3 cut(s)	140, 509, 638
BspCNI	CTCAG	2 cut(s)	127, 185
BspEI	TCCGGA	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	621, 686, 738
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	4 cut(s)	141, 639, 680, 798
BssMI	GATC	2 cut(s)	60, 697
BssNAI	GTATAC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	141, 639
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	257, 443, 603
Bst6I	CTCTTC	4 cut(s)	12, 255, 282, 813
BstACI	GRCGYC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	135, 172, 534
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	4 cut(s)	114, 417, 550, 832
BstKTI	GATC	2 cut(s)	63, 700
BstMAI	GTCTC	3 cut(s)	100, 591, 834
BstMBI	GATC	2 cut(s)	60, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 515
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	2 cut(s)	39, 680
BstZ17I	GTATAC	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	140, 509, 638
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	114, 417, 550, 832
BtsIMutI	CAGTG	3 cut(s)	439, 666, 859
CciI	TCATGA	1 cut(s)	700
Cfr13I	GGNCC	2 cut(s)	636, 807
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	580, 604
CspCI	CAANNNNNGTGG	4 cut(s)	205, 240, 542, 577
CviAII	CATG	6 cut(s)	142, 221, 270, 318, 577, 701
CviQI	GTAC	2 cut(s)	580, 604
DdeI	CTNAG	3 cut(s)	135, 172, 534
DpnI	GATC	2 cut(s)	62, 699
DpnII	GATC	2 cut(s)	60, 697
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	4 cut(s)	12, 255, 282, 813
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	4 cut(s)	12, 255, 282, 813
Eco130I	CCWWGG	2 cut(s)	141, 639
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	807
Eco81I	CCTNAGG	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	141, 639
ErhI	CCWWGG	2 cut(s)	141, 639
FaeI	CATG	6 cut(s)	145, 224, 273, 321, 580, 704
FaqI	GGGAC	2 cut(s)	182, 221
FatI	CATG	6 cut(s)	141, 220, 269, 317, 576, 700
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	4 cut(s)	101, 404, 557, 819
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	3 cut(s)	194, 782, 794
GluI	GCNGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	140, 509, 638
HapII	CCGG	3 cut(s)	365, 590, 749
HgaI	GACGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	6 cut(s)	145, 224, 273, 321, 580, 704
HinfI	GANTC	3 cut(s)	170, 176, 368
HpaII	CCGG	3 cut(s)	365, 590, 749
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	387, 439, 810
Hpy188I	TCNGA	3 cut(s)	175, 373, 684
Hpy188III	TCNNGA	6 cut(s)	103, 401, 590, 656, 701, 782
Hpy8I	GTNNAC	3 cut(s)	387, 439, 810
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	7 cut(s)	4, 62, 247, 398, 407, 535, 552
HpyCH4III	ACNGT	3 cut(s)	257, 443, 603
HpyCH4IV	ACGT	2 cut(s)	492, 720
HpyCH4V	TGCA	4 cut(s)	317, 332, 648, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 515
HpyF3I	CTNAG	3 cut(s)	135, 172, 534
HpySE526I	ACGT	2 cut(s)	492, 720
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	145, 224, 273, 321, 580, 704
Kpn2I	TCCGGA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	60, 697
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	2 cut(s)	273, 619
LpnPI	CCDG	8 cut(s)	18, 147, 342, 378, 403, 603, 654, 762
LweI	GCATC	2 cut(s)	651, 657
MaeI	CTAG	3 cut(s)	194, 782, 794
MaeII	ACGT	2 cut(s)	492, 720
MaeIII	GTNAC	3 cut(s)	265, 392, 707
MalI	GATC	2 cut(s)	62, 699
MboI	GATC	2 cut(s)	60, 697
MboII	GAAGA	9 cut(s)	16, 29, 91, 272, 299, 458, 494, 550, 830
MhlI	GDGCHC	2 cut(s)	39, 680
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	1 cut(s)	408
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	2 cut(s)	164, 185
MmeI	TCCRAC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	509
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	3 cut(s)	255, 575, 705
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	3 cut(s)	365, 590, 749
MspR9I	CCNGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	282, 515
NciI	CCSGG	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	2 cut(s)	60, 697
NlaIII	CATG	6 cut(s)	145, 224, 273, 321, 580, 704
NlaIV	GGNNCC	3 cut(s)	621, 686, 738
NmeAIII	GCCGAG	1 cut(s)	823
NmuCI	GTSAC	2 cut(s)	392, 707
PagI	TCATGA	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	491
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	2 cut(s)	164, 184
PpsI	GAGTC	2 cut(s)	164, 184
PsiI	TTATAA	2 cut(s)	297, 341
PspN4I	GGNNCC	3 cut(s)	621, 686, 738
PspPI	GGNCC	2 cut(s)	636, 807
PsrI	GAACNNNNNNTAC	2 cut(s)	677, 709
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	2 cut(s)	581, 605
RsaNI	GTAC	2 cut(s)	580, 604
RseI	CAYNNNNRTG	3 cut(s)	255, 575, 705
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	2 cut(s)	60, 697
Sau96I	GGNCC	2 cut(s)	636, 807
SchI	GAGTC	2 cut(s)	164, 185
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	2 cut(s)	39, 680
SfaNI	GCATC	2 cut(s)	651, 657
SfcI	CTRYAG	1 cut(s)	496
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	3 cut(s)	255, 575, 705
SmlI	CTYRAG	2 cut(s)	656, 760
SmoI	CTYRAG	2 cut(s)	656, 760
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	379, 382, 421
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	3 cut(s)	194, 782, 794
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	2 cut(s)	141, 639
TaaI	ACNGT	3 cut(s)	257, 443, 603
TaiI	ACGT	2 cut(s)	495, 723
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	408
TatI	WGTACW	2 cut(s)	579, 603
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TscAI	CASTG	2 cut(s)	446, 673
TseFI	GTSAC	2 cut(s)	392, 707
Tsp45I	GTSAC	2 cut(s)	392, 707
TspDTI	ATGAA	4 cut(s)	17, 229, 495, 624
TspRI	CASTG	2 cut(s)	446, 673
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	807
XagI	CCTNNNNNAGG	1 cut(s)	797
XbaI	TCTAGA	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	3 cut(s)	194, 782, 794
ZraI	GACGTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.